RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 TRIM27P14373 513 aa11.17□□□□□ -0.62
LIG4-202ENST00000405925 SIL1Q9H173 461 aa11.17□□□□□ -0.62
LIG4-202ENST00000405925 SBNO1A3KN83 1393 aa11.16□□□□□ -0.62
LIG4-202ENST00000405925 KLHL34Q8N239 644 aa11.16□□□□□ -0.62
LIG4-202ENST00000405925 DBF4Q9UBU7 674 aaPredicted RBP11.16□□□□□ -0.62
LIG4-202ENST00000405925 ABCA6Q8N139 1617 aa11.16□□□□□ -0.62
LIG4-202ENST00000405925 KDM5CP41229 1560 aa11.16□□□□□ -0.62
LIG4-202ENST00000405925 SRGAP3O43295 1099 aa11.16□□□□□ -0.62
LIG4-202ENST00000405925 SF3B2Q13435 895 aaKnown RBP11.16□□□□□ -0.62
LIG4-202ENST00000405925 CEP152O94986 1710 aa11.16□□□□□ -0.62
LIG4-202ENST00000405925 FLIIQ13045 1269 aa11.16□□□□□ -0.62
LIG4-202ENST00000405925 AKAP4Q5JQC9 854 aa11.16□□□□□ -0.62
LIG4-202ENST00000405925 KIDINS220Q9ULH0 1771 aa11.16□□□□□ -0.62
LIG4-202ENST00000405925 IL2RBP14784 551 aa11.15□□□□□ -0.62
LIG4-202ENST00000405925 CCDC27Q2M243 656 aa11.15□□□□□ -0.62
LIG4-202ENST00000405925 CCDC85AQ96PX6 553 aaPredicted RBP11.15□□□□□ -0.62
LIG4-202ENST00000405925 ANO2Q9NQ90 1003 aa11.15□□□□□ -0.62
LIG4-202ENST00000405925 ERC2O15083 957 aa11.15□□□□□ -0.62
LIG4-202ENST00000405925 GLI2P10070 1586 aa11.15□□□□□ -0.62
LIG4-202ENST00000405925 SPHKAPQ2M3C7 1700 aa11.15□□□□□ -0.63
LIG4-202ENST00000405925 BICDL1Q6ZP65 573 aa11.14□□□□□ -0.63
LIG4-202ENST00000405925 C8orf58Q8NAV2 365 aa11.14□□□□□ -0.63
LIG4-202ENST00000405925 GCC1Q96CN9 775 aa11.14□□□□□ -0.63
LIG4-202ENST00000405925 DDB1Q16531 1140 aa11.14□□□□□ -0.63
LIG4-202ENST00000405925 KRT24Q2M2I5 525 aa11.14□□□□□ -0.63
LIG4-202ENST00000405925 RUFY2Q8WXA3 655 aa11.14□□□□□ -0.63
LIG4-202ENST00000405925 E9PCH4 1651 aa11.14□□□□□ -0.63
LIG4-202ENST00000405925 LMTK2Q8IWU2 1503 aa11.14□□□□□ -0.63
LIG4-202ENST00000405925 MAP3K4Q9Y6R4 1608 aa11.14□□□□□ -0.63
LIG4-202ENST00000405925 REC8O95072 547 aa11.14□□□□□ -0.63
LIG4-202ENST00000405925 HSP90B1P14625 803 aaKnown RBP11.14□□□□□ -0.63
LIG4-202ENST00000405925 LARP1Q6PKG0 1096 aaKnown RBP11.14□□□□□ -0.63
LIG4-202ENST00000405925 FOXD4L1Q9NU39 408 aa11.14□□□□□ -0.63
LIG4-202ENST00000405925 FAM135BQ49AJ0 1406 aa11.14□□□□□ -0.63
LIG4-202ENST00000405925 LRRFIP1Q32MZ4 808 aaKnown RBP11.14□□□□□ -0.63
LIG4-202ENST00000405925 ACSBG1Q96GR2 724 aa11.14□□□□□ -0.63
LIG4-202ENST00000405925 PIK3R4Q99570 1358 aa11.14□□□□□ -0.63
LIG4-202ENST00000405925 DNAAF4Q8WXU2 420 aa11.13□□□□□ -0.63
LIG4-202ENST00000405925 MYD88Q99836 296 aa11.13□□□□□ -0.63
LIG4-202ENST00000405925 KDM5AP29375 1690 aaKnown RBP11.13□□□□□ -0.63
LIG4-202ENST00000405925 ZBTB3Q9H5J0 574 aa11.13□□□□□ -0.63
LIG4-202ENST00000405925 ARHGEF10O15013 1369 aa11.13□□□□□ -0.63
LIG4-202ENST00000405925 NBPF6Q5VWK0 638 aa11.13□□□□□ -0.63
LIG4-202ENST00000405925 NFATC2IPQ8NCF5 419 aa11.13□□□□□ -0.63
LIG4-202ENST00000405925 NBPF4Q96M43 638 aa11.13□□□□□ -0.63
LIG4-202ENST00000405925 CNNM1Q9NRU3 951 aa11.13□□□□□ -0.63
LIG4-202ENST00000405925 EXOC6BQ9Y2D4 811 aa11.13□□□□□ -0.63
LIG4-202ENST00000405925 PPRC1Q5VV67 1664 aaKnown RBP11.12□□□□□ -0.63
LIG4-202ENST00000405925 RPAP2Q8IXW5 612 aaPredicted RBP11.12□□□□□ -0.63
LIG4-202ENST00000405925 SPINK5Q9NQ38 1064 aaPredicted RBP11.12□□□□□ -0.63
LIG4-202ENST00000405925 PI4KAP2A4QPH2 592 aa11.12□□□□□ -0.63
LIG4-202ENST00000405925 ST18O60284 1047 aa11.12□□□□□ -0.63
LIG4-202ENST00000405925 SNRPA1P09661 255 aaKnown RBP11.12□□□□□ -0.63
LIG4-202ENST00000405925 TSPYL6Q8N831 410 aa11.12□□□□□ -0.63
LIG4-202ENST00000405925 PI4KAP1Q8N8J0 262 aa11.12□□□□□ -0.63
LIG4-202ENST00000405925 IL1RAPL2Q9NP60 686 aa11.12□□□□□ -0.63
LIG4-202ENST00000405925 HYPKQ9NX55 129 aa11.12□□□□□ -0.63
LIG4-202ENST00000405925 CCDC57Q2TAC2 916 aa11.12□□□□□ -0.63
LIG4-202ENST00000405925 AGLP35573 1532 aa11.12□□□□□ -0.63
LIG4-202ENST00000405925 HTATSF1O43719 755 aaKnown RBP11.11□□□□□ -0.63
LIG4-202ENST00000405925 APPP05067 770 aa11.11□□□□□ -0.63
LIG4-202ENST00000405925 IPO9Q96P70 1041 aaKnown RBP11.11□□□□□ -0.63
LIG4-202ENST00000405925 MAP3K5Q99683 1374 aa11.11□□□□□ -0.63
LIG4-202ENST00000405925 INTS3Q68E01 1043 aaKnown RBP11.11□□□□□ -0.63
LIG4-202ENST00000405925 LRRCC1Q9C099 1032 aa11.11□□□□□ -0.63
LIG4-202ENST00000405925 ADGRB3O60242 1522 aa11.11□□□□□ -0.63
LIG4-202ENST00000405925 SLC4A3P48751 1232 aa11.11□□□□□ -0.63
LIG4-202ENST00000405925 FBXW7Q969H0 707 aa11.11□□□□□ -0.63
LIG4-202ENST00000405925 ERC1Q8IUD2 1116 aa11.1□□□□□ -0.63
LIG4-202ENST00000405925 ANP32EQ9BTT0 268 aa11.1□□□□□ -0.63
LIG4-202ENST00000405925 CHPF2Q9P2E5 772 aa11.1□□□□□ -0.63
LIG4-202ENST00000405925 GOLGA6L4A6NEF3 574 aa11.1□□□□□ -0.63
LIG4-202ENST00000405925 ZRSR1Q15695 479 aaKnown RBP11.1□□□□□ -0.63
LIG4-202ENST00000405925 ARHGEF40Q8TER5 1519 aa11.1□□□□□ -0.63
LIG4-202ENST00000405925 CLTCQ00610 1675 aaKnown RBP11.1□□□□□ -0.63
LIG4-202ENST00000405925 PIP4K2AP48426 406 aaPredicted RBP11.1□□□□□ -0.63
LIG4-202ENST00000405925 DNAJC2Q99543 621 aaKnown RBP11.1□□□□□ -0.63
LIG4-202ENST00000405925 FSD1Q9BTV5 496 aa11.1□□□□□ -0.63
LIG4-202ENST00000405925 PTPRCP08575 1304 aa11.1□□□□□ -0.63
LIG4-202ENST00000405925 GPTP24298 496 aa11.09□□□□□ -0.63
LIG4-202ENST00000405925 MPHOSPH8Q99549 860 aa11.09□□□□□ -0.63
LIG4-202ENST00000405925 CAMSAP1Q5T5Y3 1602 aa11.09□□□□□ -0.63
LIG4-202ENST00000405925 ATP5J2-PTCD1G3V325 749 aa11.09□□□□□ -0.63
LIG4-202ENST00000405925 CDC45O75419 566 aa11.09□□□□□ -0.63
LIG4-202ENST00000405925 ZKSCAN1P17029 563 aaPredicted RBP11.09□□□□□ -0.63
LIG4-202ENST00000405925 WASHC4Q2M389 1173 aa11.09□□□□□ -0.63
LIG4-202ENST00000405925 DCAF5Q96JK2 942 aa11.09□□□□□ -0.63
LIG4-202ENST00000405925 MAP3K2Q9Y2U5 619 aa11.09□□□□□ -0.63
LIG4-202ENST00000405925 USP6P35125 1406 aa11.09□□□□□ -0.63
LIG4-202ENST00000405925 SYNMO15061 1565 aa11.09□□□□□ -0.63
LIG4-202ENST00000405925 GNL2Q13823 731 aaKnown RBP11.09□□□□□ -0.63
LIG4-202ENST00000405925 CHD1LQ86WJ1 897 aa11.09□□□□□ -0.63
LIG4-202ENST00000405925 LRRFIP2Q9Y608 721 aaKnown RBP11.09□□□□□ -0.63
LIG4-202ENST00000405925 ALKQ9UM73 1620 aa11.09□□□□□ -0.63
LIG4-202ENST00000405925 A0A087WZG4 1122 aa11.09□□□□□ -0.63
LIG4-202ENST00000405925 ATP7BP35670 1465 aa11.08□□□□□ -0.64
LIG4-202ENST00000405925 RNMTO43148 476 aaKnown RBP11.08□□□□□ -0.64
LIG4-202ENST00000405925 SKAP1Q86WV1 359 aa11.08□□□□□ -0.64
LIG4-202ENST00000405925 TEX13AQ9BXU3 409 aaPredicted RBP11.08□□□□□ -0.64
LIG4-202ENST00000405925 VAMP4O75379 141 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms