RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 WASLO00401 505 aaPredicted RBP14.43□□□□□ -0.1
HMGB1-206ENST00000405805 POLKQ9UBT6 870 aa14.43□□□□□ -0.1
HMGB1-206ENST00000405805 INSRP06213 1382 aa14.43□□□□□ -0.1
HMGB1-206ENST00000405805 SPC24Q8NBT2 197 aa14.42□□□□□ -0.1
HMGB1-206ENST00000405805 RBM25P49756 843 aaKnown RBP14.42□□□□□ -0.1
HMGB1-206ENST00000405805 NLRP6P59044 892 aa14.42□□□□□ -0.1
HMGB1-206ENST00000405805 ALDH1L2Q3SY69 923 aa14.42□□□□□ -0.1
HMGB1-206ENST00000405805 ZBTB7BO15156 539 aaPredicted RBP14.42□□□□□ -0.1
HMGB1-206ENST00000405805 PRIM1P49642 420 aaKnown RBP14.41□□□□□ -0.1
HMGB1-206ENST00000405805 SPDYE4A6NLX3 237 aa14.41□□□□□ -0.1
HMGB1-206ENST00000405805 CSPP1Q1MSJ5 1256 aa14.41□□□□□ -0.1
HMGB1-206ENST00000405805 ZNF592Q92610 1267 aa14.41□□□□□ -0.1
HMGB1-206ENST00000405805 ZNF830Q96NB3 372 aaPredicted RBP14.41□□□□□ -0.1
HMGB1-206ENST00000405805 NPC1L1Q9UHC9 1359 aa14.41□□□□□ -0.1
HMGB1-206ENST00000405805 MRPL50Q8N5N7 158 aaKnown RBP14.41□□□□□ -0.1
HMGB1-206ENST00000405805 RAB3GAP1Q15042 981 aa14.41□□□□□ -0.1
HMGB1-206ENST00000405805 DIAPH3Q9NSV4 1193 aa14.4□□□□□ -0.1
HMGB1-206ENST00000405805 ZSCAN23Q3MJ62 389 aa14.39□□□□□ -0.11
HMGB1-206ENST00000405805 SMC3Q9UQE7 1217 aa14.39□□□□□ -0.11
HMGB1-206ENST00000405805 E9PCH4 1651 aa14.39□□□□□ -0.11
HMGB1-206ENST00000405805 UBTFL1P0CB47 393 aaPredicted RBP14.39□□□□□ -0.11
HMGB1-206ENST00000405805 AIMP1Q12904 312 aaKnown RBP14.39□□□□□ -0.11
HMGB1-206ENST00000405805 CCDC66A2RUB6 948 aa14.38□□□□□ -0.11
HMGB1-206ENST00000405805 GNAI2P04899 355 aa14.38□□□□□ -0.11
HMGB1-206ENST00000405805 PLEKHM2Q8IWE5 1019 aa14.38□□□□□ -0.11
HMGB1-206ENST00000405805 ZRSR1Q15695 479 aaKnown RBP14.38□□□□□ -0.11
HMGB1-206ENST00000405805 ZNF330Q9Y3S2 320 aaPredicted RBP14.38□□□□□ -0.11
HMGB1-206ENST00000405805 FOXO3O43524 673 aa14.38□□□□□ -0.11
HMGB1-206ENST00000405805 TTC22Q5TAA0 569 aa14.38□□□□□ -0.11
HMGB1-206ENST00000405805 FERMT3Q86UX7 667 aa14.38□□□□□ -0.11
HMGB1-206ENST00000405805 HSP90AB2PQ58FF8 381 aa14.37□□□□□ -0.11
HMGB1-206ENST00000405805 IFT57Q9NWB7 429 aa14.37□□□□□ -0.11
HMGB1-206ENST00000405805 CLASP1Q7Z460 1538 aa14.37□□□□□ -0.11
HMGB1-206ENST00000405805 HSP90B1P14625 803 aaKnown RBP14.37□□□□□ -0.11
HMGB1-206ENST00000405805 KLHL40Q2TBA0 621 aa14.37□□□□□ -0.11
HMGB1-206ENST00000405805 CWC27Q6UX04 472 aaKnown RBP14.37□□□□□ -0.11
HMGB1-206ENST00000405805 LRRCC1Q9C099 1032 aa14.37□□□□□ -0.11
HMGB1-206ENST00000405805 TSPY26PQ9H489 355 aa14.37□□□□□ -0.11
HMGB1-206ENST00000405805 C9orf78Q9NZ63 289 aaPredicted RBP14.37□□□□□ -0.11
HMGB1-206ENST00000405805 YTHDC2Q9H6S0 1430 aaKnown RBP14.36□□□□□ -0.11
HMGB1-206ENST00000405805 IRX3P78415 501 aaPredicted RBP14.36□□□□□ -0.11
HMGB1-206ENST00000405805 SNX21Q969T3 373 aa14.36□□□□□ -0.11
HMGB1-206ENST00000405805 GOLGA6L6A8MZA4 724 aa14.36□□□□□ -0.11
HMGB1-206ENST00000405805 PHF14O94880 888 aa14.36□□□□□ -0.11
HMGB1-206ENST00000405805 ANXA1P04083 346 aa14.36□□□□□ -0.11
HMGB1-206ENST00000405805 RPAP2Q8IXW5 612 aaPredicted RBP14.36□□□□□ -0.11
HMGB1-206ENST00000405805 FAM177BA6PVY3 158 aa14.36□□□□□ -0.11
HMGB1-206ENST00000405805 DHX37Q8IY37 1157 aaKnown RBP14.36□□□□□ -0.11
HMGB1-206ENST00000405805 USP25Q9UHP3 1055 aa14.36□□□□□ -0.11
HMGB1-206ENST00000405805 SHROOM2Q13796 1616 aa14.35□□□□□ -0.11
HMGB1-206ENST00000405805 USHBP1Q8N6Y0 703 aa14.35□□□□□ -0.11
HMGB1-206ENST00000405805 ISY1Q9ULR0 285 aaKnown RBP14.35□□□□□ -0.11
HMGB1-206ENST00000405805 CEBPZQ03701 1054 aaKnown RBP14.35□□□□□ -0.11
HMGB1-206ENST00000405805 RBSNQ9H1K0 784 aa14.35□□□□□ -0.11
HMGB1-206ENST00000405805 STK3Q13188 491 aa14.34□□□□□ -0.11
HMGB1-206ENST00000405805 CERS3Q8IU89 383 aa14.34□□□□□ -0.11
HMGB1-206ENST00000405805 ABTB2Q8N961 1025 aa14.34□□□□□ -0.11
HMGB1-206ENST00000405805 CWC22Q9HCG8 908 aaKnown RBP14.34□□□□□ -0.11
HMGB1-206ENST00000405805 ABCC11Q96J66 1382 aa14.34□□□□□ -0.11
HMGB1-206ENST00000405805 TNNT1P13805 278 aa14.34□□□□□ -0.11
HMGB1-206ENST00000405805 GSPT1P15170 499 aaKnown RBP14.34□□□□□ -0.11
HMGB1-206ENST00000405805 TMX3Q96JJ7 454 aa14.34□□□□□ -0.11
HMGB1-206ENST00000405805 ZNF692Q9BU19 519 aaPredicted RBP14.34□□□□□ -0.11
HMGB1-206ENST00000405805 NPHP1O15259 732 aa14.34□□□□□ -0.11
HMGB1-206ENST00000405805 TEFQ10587 303 aa14.34□□□□□ -0.11
HMGB1-206ENST00000405805 SPG7Q9UQ90 795 aa14.34□□□□□ -0.11
HMGB1-206ENST00000405805 MADDQ8WXG6 1647 aa14.34□□□□□ -0.11
HMGB1-206ENST00000405805 G2E3Q7L622 706 aa14.34□□□□□ -0.11
HMGB1-206ENST00000405805 ERBB4Q15303 1308 aa14.33□□□□□ -0.11
HMGB1-206ENST00000405805 NSD2O96028 1365 aa14.33□□□□□ -0.11
HMGB1-206ENST00000405805 SRGAP3O43295 1099 aa14.33□□□□□ -0.12
HMGB1-206ENST00000405805 PPFIA3O75145 1194 aa14.33□□□□□ -0.12
HMGB1-206ENST00000405805 HDGFL1Q5TGJ6 251 aa14.33□□□□□ -0.12
HMGB1-206ENST00000405805 CCDC39Q9UFE4 941 aa14.33□□□□□ -0.12
HMGB1-206ENST00000405805 LRRFIP2Q9Y608 721 aaKnown RBP14.33□□□□□ -0.12
HMGB1-206ENST00000405805 MBD3O95983 291 aa14.33□□□□□ -0.12
HMGB1-206ENST00000405805 SIL1Q9H173 461 aa14.33□□□□□ -0.12
HMGB1-206ENST00000405805 RIMS2Q9UQ26 1411 aa14.33□□□□□ -0.12
HMGB1-206ENST00000405805 AMOTL2Q9Y2J4 779 aa14.33□□□□□ -0.12
HMGB1-206ENST00000405805 TET3O43151 1660 aa14.33□□□□□ -0.12
HMGB1-206ENST00000405805 FSD2A1L4K1 749 aa14.33□□□□□ -0.12
HMGB1-206ENST00000405805 IFIT2P09913 472 aaKnown RBP14.33□□□□□ -0.12
HMGB1-206ENST00000405805 MX1P20591 662 aa14.32□□□□□ -0.12
HMGB1-206ENST00000405805 SBNO2Q9Y2G9 1366 aa14.32□□□□□ -0.12
HMGB1-206ENST00000405805 ACEP12821 1306 aa14.32□□□□□ -0.12
HMGB1-206ENST00000405805 KDM5AP29375 1690 aaKnown RBP14.32□□□□□ -0.12
HMGB1-206ENST00000405805 CAMK4Q16566 473 aa14.32□□□□□ -0.12
HMGB1-206ENST00000405805 GPATCH11Q8N954 259 aa14.32□□□□□ -0.12
HMGB1-206ENST00000405805 USP26Q9BXU7 913 aa14.32□□□□□ -0.12
HMGB1-206ENST00000405805 EFCAB6Q5THR3 1501 aa14.32□□□□□ -0.12
HMGB1-206ENST00000405805 GNAI3P08754 354 aa14.31□□□□□ -0.12
HMGB1-206ENST00000405805 SIRT2Q8IXJ6 389 aa14.31□□□□□ -0.12
HMGB1-206ENST00000405805 MLH3Q9UHC1 1453 aa14.31□□□□□ -0.12
HMGB1-206ENST00000405805 IL16Q14005 1332 aa14.31□□□□□ -0.12
HMGB1-206ENST00000405805 BICD2Q8TD16 824 aa14.31□□□□□ -0.12
HMGB1-206ENST00000405805 PLEKHF1Q96S99 279 aa14.31□□□□□ -0.12
HMGB1-206ENST00000405805 MYOM2P54296 1465 aa14.31□□□□□ -0.12
HMGB1-206ENST00000405805 CPA1P15085 419 aa14.31□□□□□ -0.12
HMGB1-206ENST00000405805 PSME1Q06323 249 aa14.31□□□□□ -0.12
HMGB1-206ENST00000405805 PPP4R3BQ5MIZ7 849 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 192 ms