RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 WDR17Q8IZU2 1322 aa4.8□□□□□ -1.64
RTN4-208ENST00000404909 BCAR3O75815 825 aa4.8□□□□□ -1.64
RTN4-208ENST00000404909 TATP17735 454 aaPredicted RBP4.8□□□□□ -1.64
RTN4-208ENST00000404909 C1orf141Q5JVX7 400 aa4.8□□□□□ -1.64
RTN4-208ENST00000404909 RGPD5Q99666 1765 aa4.8□□□□□ -1.64
RTN4-208ENST00000404909 RRP1P56182 461 aaKnown RBP4.8□□□□□ -1.64
RTN4-208ENST00000404909 AMOTQ4VCS5 1084 aa4.8□□□□□ -1.64
RTN4-208ENST00000404909 MPRIPQ6WCQ1 1025 aa4.8□□□□□ -1.64
RTN4-208ENST00000404909 CFAP44Q96MT7 982 aa4.8□□□□□ -1.64
RTN4-208ENST00000404909 MBIPQ9NS73 344 aa4.8□□□□□ -1.64
RTN4-208ENST00000404909 IFT57Q9NWB7 429 aa4.8□□□□□ -1.64
RTN4-208ENST00000404909 PHLPP1O60346 1717 aa4.8□□□□□ -1.64
RTN4-208ENST00000404909 CAMTA1Q9Y6Y1 1673 aa4.8□□□□□ -1.64
RTN4-208ENST00000404909 RGPD2P0DJD1 1756 aa4.8□□□□□ -1.64
RTN4-208ENST00000404909 MAP3K5Q99683 1374 aa4.8□□□□□ -1.64
RTN4-208ENST00000404909 CANXP27824 592 aaKnown RBP4.79□□□□□ -1.64
RTN4-208ENST00000404909 IL17REQ8NFR9 667 aa4.79□□□□□ -1.64
RTN4-208ENST00000404909 FRAT1Q92837 279 aaPredicted RBP4.79□□□□□ -1.64
RTN4-208ENST00000404909 LGR6Q9HBX8 967 aa4.79□□□□□ -1.64
RTN4-208ENST00000404909 HSPA1LP34931 641 aa4.79□□□□□ -1.64
RTN4-208ENST00000404909 TSPYL4Q9UJ04 414 aa4.79□□□□□ -1.64
RTN4-208ENST00000404909 CRYBG1Q9Y4K1 1723 aa4.79□□□□□ -1.64
RTN4-208ENST00000404909 COL5A2P05997 1499 aaPredicted RBP4.79□□□□□ -1.64
RTN4-208ENST00000404909 AKAP4Q5JQC9 854 aa4.79□□□□□ -1.64
RTN4-208ENST00000404909 C8orf37Q96NL8 207 aa4.79□□□□□ -1.64
RTN4-208ENST00000404909 SPG7Q9UQ90 795 aa4.79□□□□□ -1.64
RTN4-208ENST00000404909 CCDC9Q9Y3X0 531 aaKnown RBP4.79□□□□□ -1.64
RTN4-208ENST00000404909 COL16A1Q07092 1604 aaPredicted RBP4.79□□□□□ -1.64
RTN4-208ENST00000404909 COL18A1P39060 1754 aa4.79□□□□□ -1.64
RTN4-208ENST00000404909 TCERG1O14776 1098 aaKnown RBP4.78□□□□□ -1.64
RTN4-208ENST00000404909 HTATSF1O43719 755 aaKnown RBP4.78□□□□□ -1.64
RTN4-208ENST00000404909 ZNF853P0CG23 659 aa4.78□□□□□ -1.64
RTN4-208ENST00000404909 RARSP54136 660 aaKnown RBP4.78□□□□□ -1.64
RTN4-208ENST00000404909 TEFQ10587 303 aa4.78□□□□□ -1.64
RTN4-208ENST00000404909 KRT24Q2M2I5 525 aa4.78□□□□□ -1.64
RTN4-208ENST00000404909 TSPYL6Q8N831 410 aa4.78□□□□□ -1.64
RTN4-208ENST00000404909 CARD10Q9BWT7 1032 aa4.78□□□□□ -1.64
RTN4-208ENST00000404909 DLG5Q8TDM6 1919 aa4.78□□□□□ -1.64
RTN4-208ENST00000404909 CHL1O00533 1208 aa4.78□□□□□ -1.64
RTN4-208ENST00000404909 GOLGA6L2Q8N9W4 650 aaPredicted RBP4.78□□□□□ -1.64
RTN4-208ENST00000404909 C8orf58Q8NAV2 365 aa4.78□□□□□ -1.64
RTN4-208ENST00000404909 DDX54Q8TDD1 881 aaKnown RBP4.78□□□□□ -1.64
RTN4-208ENST00000404909 NGLY1Q96IV0 654 aa4.78□□□□□ -1.64
RTN4-208ENST00000404909 SMC4Q9NTJ3 1288 aa4.78□□□□□ -1.64
RTN4-208ENST00000404909 MEGF6O75095 1541 aa4.78□□□□□ -1.64
RTN4-208ENST00000404909 RNF123Q5XPI4 1314 aa4.78□□□□□ -1.64
RTN4-208ENST00000404909 IL2RBP14784 551 aa4.78□□□□□ -1.64
RTN4-208ENST00000404909 C20orf194Q5TEA3 1177 aa4.78□□□□□ -1.64
RTN4-208ENST00000404909 JCADQ9P266 1359 aa4.78□□□□□ -1.64
RTN4-208ENST00000404909 TAF7Q15545 349 aaPredicted RBP4.78□□□□□ -1.64
RTN4-208ENST00000404909 TWISTNBQ3B726 338 aaPredicted RBP4.78□□□□□ -1.64
RTN4-208ENST00000404909 IFNL2Q8IZJ0 200 aa4.78□□□□□ -1.64
RTN4-208ENST00000404909 ZCRB1Q8TBF4 217 aaKnown RBP4.78□□□□□ -1.64
RTN4-208ENST00000404909 SSH1Q8WYL5 1049 aa4.78□□□□□ -1.64
RTN4-208ENST00000404909 ABCA3Q99758 1704 aa4.77□□□□□ -1.65
RTN4-208ENST00000404909 CRB1P82279 1406 aa4.77□□□□□ -1.65
RTN4-208ENST00000404909 NCAPD2Q15021 1401 aa4.77□□□□□ -1.65
RTN4-208ENST00000404909 ABCC6O95255 1503 aa4.77□□□□□ -1.65
RTN4-208ENST00000404909 CYP27B1O15528 508 aa4.77□□□□□ -1.65
RTN4-208ENST00000404909 RNMTO43148 476 aaKnown RBP4.77□□□□□ -1.65
RTN4-208ENST00000404909 MEX3CQ5U5Q3 659 aaKnown RBP4.77□□□□□ -1.65
RTN4-208ENST00000404909 CT47B1P0C2W7 299 aaPredicted RBP4.77□□□□□ -1.65
RTN4-208ENST00000404909 PHKG2P15735 406 aa4.77□□□□□ -1.65
RTN4-208ENST00000404909 CLUAP1Q96AJ1 413 aa4.77□□□□□ -1.65
RTN4-208ENST00000404909 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP4.77□□□□□ -1.65
RTN4-208ENST00000404909 BTBD11A6QL63 1104 aa4.77□□□□□ -1.65
RTN4-208ENST00000404909 VAMP4O75379 141 aa4.77□□□□□ -1.65
RTN4-208ENST00000404909 PELP1Q8IZL8 1130 aaKnown RBP4.77□□□□□ -1.65
RTN4-208ENST00000404909 EXOC6Q8TAG9 804 aa4.77□□□□□ -1.65
RTN4-208ENST00000404909 LMO7Q8WWI1 1683 aa4.76□□□□□ -1.65
RTN4-208ENST00000404909 MYT1Q01538 1121 aa4.76□□□□□ -1.65
RTN4-208ENST00000404909 NECTIN2Q92692 538 aa4.76□□□□□ -1.65
RTN4-208ENST00000404909 COL22A1Q8NFW1 1626 aaPredicted RBP4.76□□□□□ -1.65
RTN4-208ENST00000404909 NFATC2IPQ8NCF5 419 aa4.76□□□□□ -1.65
RTN4-208ENST00000404909 CRBNQ96SW2 442 aa4.76□□□□□ -1.65
RTN4-208ENST00000404909 PCDH11XQ9BZA7 1347 aa4.76□□□□□ -1.65
RTN4-208ENST00000404909 PCDH11YQ9BZA8 1340 aa4.76□□□□□ -1.65
RTN4-208ENST00000404909 CEMIPQ8WUJ3 1361 aa4.76□□□□□ -1.65
RTN4-208ENST00000404909 A0A0G2JS52 829 aa4.76□□□□□ -1.65
RTN4-208ENST00000404909 KCNQ3O43525 872 aa4.76□□□□□ -1.65
RTN4-208ENST00000404909 PANK1Q8TE04 598 aa4.76□□□□□ -1.65
RTN4-208ENST00000404909 OVOS2A0A0G2JMS6 1433 aa4.76□□□□□ -1.65
RTN4-208ENST00000404909 HSP90AB1P08238 724 aaKnown RBP4.75□□□□□ -1.65
RTN4-208ENST00000404909 SLC39A6Q13433 755 aa4.75□□□□□ -1.65
RTN4-208ENST00000404909 B4GALNT3Q6L9W6 998 aa4.75□□□□□ -1.65
RTN4-208ENST00000404909 UNC5CLQ8IV45 518 aa4.75□□□□□ -1.65
RTN4-208ENST00000404909 FTSJ3Q8IY81 847 aaKnown RBP4.75□□□□□ -1.65
RTN4-208ENST00000404909 DCAF5Q96JK2 942 aa4.75□□□□□ -1.65
RTN4-208ENST00000404909 NOB1Q9ULX3 412 aaKnown RBP4.75□□□□□ -1.65
RTN4-208ENST00000404909 TNNQ9UQP3 1299 aa4.75□□□□□ -1.65
RTN4-208ENST00000404909 SPATA31A6Q5VVP1 1343 aa4.75□□□□□ -1.65
RTN4-208ENST00000404909 FAM208AQ9UK61 1670 aaKnown RBP4.75□□□□□ -1.65
RTN4-208ENST00000404909 COL14A1Q05707 1796 aaKnown RBP4.75□□□□□ -1.65
RTN4-208ENST00000404909 EIF2S2P20042 333 aaKnown RBP4.75□□□□□ -1.65
RTN4-208ENST00000404909 CABP4P57796 275 aa4.75□□□□□ -1.65
RTN4-208ENST00000404909 ZKSCAN2Q63HK3 967 aa4.75□□□□□ -1.65
RTN4-208ENST00000404909 SLC52A2Q9HAB3 445 aa4.75□□□□□ -1.65
RTN4-208ENST00000404909 PPP4R2Q9NY27 417 aa4.75□□□□□ -1.65
RTN4-208ENST00000404909 KAT6BQ8WYB5 2073 aa4.75□□□□□ -1.65
RTN4-208ENST00000404909 EXOC5O00471 708 aa4.75□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms