RNA–Protein interactions for RNA: ENST00000400337.6

COL18A1-204, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL18A1, Length 5,436 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-204ENST00000400337 NKTRP30414 1462 aaKnown RBP21.6■■□□□ 1.05
COL18A1-204ENST00000400337 SMARCA5O60264 1052 aaPredicted RBP21.6■■□□□ 1.05
COL18A1-204ENST00000400337 OFD1O75665 1012 aa21.59■■□□□ 1.05
COL18A1-204ENST00000400337 KRT85P78386 507 aa21.59■■□□□ 1.05
COL18A1-204ENST00000400337 TAF7Q15545 349 aaPredicted RBP21.59■■□□□ 1.05
COL18A1-204ENST00000400337 URB2Q14146 1524 aaKnown RBP21.59■■□□□ 1.05
COL18A1-204ENST00000400337 PTCD1O75127 700 aaKnown RBP21.59■■□□□ 1.05
COL18A1-204ENST00000400337 ME1P48163 572 aa21.59■■□□□ 1.05
COL18A1-204ENST00000400337 JMYQ8N9B5 988 aa21.59■■□□□ 1.05
COL18A1-204ENST00000400337 NOS1P29475 1434 aa21.59■■□□□ 1.05
COL18A1-204ENST00000400337 FAM135AQ9P2D6 1515 aa21.59■■□□□ 1.05
COL18A1-204ENST00000400337 TXLNAP40222 546 aa21.59■■□□□ 1.05
COL18A1-204ENST00000400337 CCDC69A6NI79 296 aa21.58■■□□□ 1.05
COL18A1-204ENST00000400337 NUP133Q8WUM0 1156 aa21.58■■□□□ 1.05
COL18A1-204ENST00000400337 BRPF3Q9ULD4 1205 aa21.58■■□□□ 1.05
COL18A1-204ENST00000400337 KIF1BPQ96EK5 621 aa21.58■■□□□ 1.04
COL18A1-204ENST00000400337 ATP2B2Q01814 1243 aa21.58■■□□□ 1.04
COL18A1-204ENST00000400337 CDK5RAP3Q96JB5 506 aa21.57■■□□□ 1.04
COL18A1-204ENST00000400337 F6X3S4 739 aa21.57■■□□□ 1.04
COL18A1-204ENST00000400337 MX1P20591 662 aa21.57■■□□□ 1.04
COL18A1-204ENST00000400337 CEBPAP49715 358 aaPredicted RBP21.57■■□□□ 1.04
COL18A1-204ENST00000400337 SCAF11Q99590 1463 aaKnown RBP21.57■■□□□ 1.04
COL18A1-204ENST00000400337 SPINK5Q9NQ38 1064 aaPredicted RBP21.57■■□□□ 1.04
COL18A1-204ENST00000400337 PHF8Q9UPP1 1060 aa21.57■■□□□ 1.04
COL18A1-204ENST00000400337 ZNF608Q9ULD9 1512 aaPredicted RBP21.57■■□□□ 1.04
COL18A1-204ENST00000400337 FOXO3O43524 673 aa21.57■■□□□ 1.04
COL18A1-204ENST00000400337 TTLL5Q6EMB2 1281 aa21.56■■□□□ 1.04
COL18A1-204ENST00000400337 CCDC192P0DO97 292 aa21.56■■□□□ 1.04
COL18A1-204ENST00000400337 TNMDQ9H2S6 317 aa21.56■■□□□ 1.04
COL18A1-204ENST00000400337 ARGLU1Q9NWB6 273 aaPredicted RBP21.55■■□□□ 1.04
COL18A1-204ENST00000400337 CTNNA3Q9UI47 895 aa21.55■■□□□ 1.04
COL18A1-204ENST00000400337 SPC24Q8NBT2 197 aa21.55■■□□□ 1.04
COL18A1-204ENST00000400337 ZSCAN31Q96LW9 406 aaPredicted RBP21.55■■□□□ 1.04
COL18A1-204ENST00000400337 STARD3NLO95772 234 aa21.55■■□□□ 1.04
COL18A1-204ENST00000400337 BRPF1P55201 1214 aaPredicted RBP21.55■■□□□ 1.04
COL18A1-204ENST00000400337 C14orf93Q9H972 538 aaKnown RBP21.55■■□□□ 1.04
COL18A1-204ENST00000400337 DISP3Q9P2K9 1392 aa21.55■■□□□ 1.04
COL18A1-204ENST00000400337 CT47A1Q5JQC4 288 aaPredicted RBP21.55■■□□□ 1.04
COL18A1-204ENST00000400337 CCDC173Q0VFZ6 552 aa21.54■■□□□ 1.04
COL18A1-204ENST00000400337 BICDL1Q6ZP65 573 aa21.54■■□□□ 1.04
COL18A1-204ENST00000400337 MPRIPQ6WCQ1 1025 aa21.54■■□□□ 1.04
COL18A1-204ENST00000400337 CIZ1Q9ULV3 898 aaPredicted RBP21.54■■□□□ 1.04
COL18A1-204ENST00000400337 IDH1O75874 414 aaKnown RBP21.54■■□□□ 1.04
COL18A1-204ENST00000400337 TDO2P48775 406 aa21.54■■□□□ 1.04
COL18A1-204ENST00000400337 PIP4K2BP78356 416 aa21.54■■□□□ 1.04
COL18A1-204ENST00000400337 LARP1Q6PKG0 1096 aaKnown RBP21.54■■□□□ 1.04
COL18A1-204ENST00000400337 KRT32Q14532 448 aa21.54■■□□□ 1.04
COL18A1-204ENST00000400337 FILIP1LQ4L180 1135 aa21.54■■□□□ 1.04
COL18A1-204ENST00000400337 AMOTQ4VCS5 1084 aa21.54■■□□□ 1.04
COL18A1-204ENST00000400337 CASTP20810 708 aaKnown RBP21.53■■□□□ 1.04
COL18A1-204ENST00000400337 MCM4P33991 863 aa21.53■■□□□ 1.04
COL18A1-204ENST00000400337 RAI14Q9P0K7 980 aa21.53■■□□□ 1.04
COL18A1-204ENST00000400337 GLRX3O76003 335 aaKnown RBP21.53■■□□□ 1.04
COL18A1-204ENST00000400337 TEX35Q5T0J7 233 aa21.53■■□□□ 1.04
COL18A1-204ENST00000400337 FANCAO15360 1455 aa21.53■■□□□ 1.04
COL18A1-204ENST00000400337 RAB11FIP3O75154 756 aa21.52■■□□□ 1.04
COL18A1-204ENST00000400337 MYD88Q99836 296 aa21.52■■□□□ 1.04
COL18A1-204ENST00000400337 TRIM27P14373 513 aa21.52■■□□□ 1.04
COL18A1-204ENST00000400337 LRP2BPQ9P2M1 347 aa21.52■■□□□ 1.04
COL18A1-204ENST00000400337 SPATA32Q96LK8 384 aa21.51■■□□□ 1.03
COL18A1-204ENST00000400337 IGHMBP2P38935 993 aaKnown RBP21.51■■□□□ 1.03
COL18A1-204ENST00000400337 MPNDQ8N594 471 aa21.51■■□□□ 1.03
COL18A1-204ENST00000400337 SETQ01105 290 aaPredicted RBP21.51■■□□□ 1.03
COL18A1-204ENST00000400337 MAGEC2Q9UBF1 373 aaPredicted RBP21.51■■□□□ 1.03
COL18A1-204ENST00000400337 LRPPRCP42704 1394 aaKnown RBP21.51■■□□□ 1.03
COL18A1-204ENST00000400337 METTL24Q5JXM2 366 aa21.5■■□□□ 1.03
COL18A1-204ENST00000400337 UPF3BQ9BZI7 483 aaKnown RBP21.5■■□□□ 1.03
COL18A1-204ENST00000400337 UBAC1Q9BSL1 405 aa21.5■■□□□ 1.03
COL18A1-204ENST00000400337 BOLA2Q9H3K6 86 aa21.5■■□□□ 1.03
COL18A1-204ENST00000400337 TMOD3Q9NYL9 352 aa21.5■■□□□ 1.03
COL18A1-204ENST00000400337 KRT18P05783 430 aaKnown RBP21.5■■□□□ 1.03
COL18A1-204ENST00000400337 RUFY1Q96T51 708 aa21.5■■□□□ 1.03
COL18A1-204ENST00000400337 PPP6R1Q9UPN7 881 aa21.5■■□□□ 1.03
COL18A1-204ENST00000400337 GRPEL1Q9HAV7 217 aa21.5■■□□□ 1.03
COL18A1-204ENST00000400337 THOC2Q8NI27 1593 aaKnown RBP21.49■■□□□ 1.03
COL18A1-204ENST00000400337 CDKL5O76039 1030 aa21.49■■□□□ 1.03
COL18A1-204ENST00000400337 SERPINC1P01008 464 aa21.49■■□□□ 1.03
COL18A1-204ENST00000400337 CCAR1Q8IX12 1150 aaKnown RBP21.49■■□□□ 1.03
COL18A1-204ENST00000400337 DHX29Q7Z478 1369 aaKnown RBP21.49■■□□□ 1.03
COL18A1-204ENST00000400337 LRRFIP2Q9Y608 721 aaKnown RBP21.49■■□□□ 1.03
COL18A1-204ENST00000400337 PPP1R1BQ9UD71 204 aaPredicted RBP21.49■■□□□ 1.03
COL18A1-204ENST00000400337 DENND4BO75064 1496 aaPredicted RBP21.49■■□□□ 1.03
COL18A1-204ENST00000400337 CAGE1Q8TC20 777 aa21.48■■□□□ 1.03
COL18A1-204ENST00000400337 DNAAF4Q8WXU2 420 aa21.48■■□□□ 1.03
COL18A1-204ENST00000400337 DDX11Q96FC9 970 aa21.48■■□□□ 1.03
COL18A1-204ENST00000400337 PRPF40BQ6NWY9 871 aaKnown RBP21.48■■□□□ 1.03
COL18A1-204ENST00000400337 AIDAQ96BJ3 306 aa21.48■■□□□ 1.03
COL18A1-204ENST00000400337 GPATCH8Q9UKJ3 1502 aaKnown RBP21.48■■□□□ 1.03
COL18A1-204ENST00000400337 SMARCE1Q969G3 411 aa21.48■■□□□ 1.03
COL18A1-204ENST00000400337 ABCF2Q9UG63 623 aa21.48■■□□□ 1.03
COL18A1-204ENST00000400337 IMMTQ16891 758 aaKnown RBP21.47■■□□□ 1.03
COL18A1-204ENST00000400337 CFAP45Q9UL16 551 aa21.47■■□□□ 1.03
COL18A1-204ENST00000400337 SF3B2Q13435 895 aaKnown RBP21.47■■□□□ 1.03
COL18A1-204ENST00000400337 PIP4K2AP48426 406 aaPredicted RBP21.47■■□□□ 1.03
COL18A1-204ENST00000400337 ODF2Q5BJF6 829 aa21.47■■□□□ 1.03
COL18A1-204ENST00000400337 NSD2O96028 1365 aa21.47■■□□□ 1.03
COL18A1-204ENST00000400337 RBM5P52756 815 aaKnown RBP eCLIP21.46■■□□□ 1.031e-6■■□□□ 14.3
COL18A1-204ENST00000400337 SOGA3Q5TF21 947 aa21.46■■□□□ 1.03
COL18A1-204ENST00000400337 FLIIQ13045 1269 aa21.46■■□□□ 1.03
COL18A1-204ENST00000400337 CCDC8Q9H0W5 538 aaPredicted RBP21.45■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms