RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 RNF20Q5VTR2 975 aa22.43■■□□□ 1.18
USP48-204ENST00000400301 RNF214Q8ND24 703 aa22.43■■□□□ 1.18
USP48-204ENST00000400301 ISY1Q9ULR0 285 aaKnown RBP22.43■■□□□ 1.18
USP48-204ENST00000400301 FLIIQ13045 1269 aa22.43■■□□□ 1.18
USP48-204ENST00000400301 MX1P20591 662 aa22.43■■□□□ 1.18
USP48-204ENST00000400301 GOLGA6L6A8MZA4 724 aa22.42■■□□□ 1.18
USP48-204ENST00000400301 XPCQ01831 940 aaPredicted RBP22.42■■□□□ 1.18
USP48-204ENST00000400301 TTC22Q5TAA0 569 aa22.41■■□□□ 1.18
USP48-204ENST00000400301 ZBTB7BO15156 539 aaPredicted RBP22.41■■□□□ 1.18
USP48-204ENST00000400301 SSFA2P28290 1259 aa22.41■■□□□ 1.18
USP48-204ENST00000400301 NUTM1Q86Y26 1132 aa22.41■■□□□ 1.18
USP48-204ENST00000400301 H3BQV1 296 aa22.41■■□□□ 1.18
USP48-204ENST00000400301 IFFO2Q5TF58 517 aa22.41■■□□□ 1.18
USP48-204ENST00000400301 ANKLE2Q86XL3 938 aa22.41■■□□□ 1.18
USP48-204ENST00000400301 IL13P35225 146 aa22.4■■□□□ 1.18
USP48-204ENST00000400301 RBM33Q96EV2 1170 aaKnown RBP22.4■■□□□ 1.18
USP48-204ENST00000400301 CLTCL1P53675 1640 aa22.4■■□□□ 1.18
USP48-204ENST00000400301 MBD3O95983 291 aa22.4■■□□□ 1.18
USP48-204ENST00000400301 ANKRD44Q8N8A2 993 aa22.4■■□□□ 1.18
USP48-204ENST00000400301 FAM184AQ8NB25 1140 aa22.4■■□□□ 1.18
USP48-204ENST00000400301 BTBD11A6QL63 1104 aa22.4■■□□□ 1.18
USP48-204ENST00000400301 GNL2Q13823 731 aaKnown RBP22.4■■□□□ 1.18
USP48-204ENST00000400301 LRRFIP2Q9Y608 721 aaKnown RBP22.4■■□□□ 1.18
USP48-204ENST00000400301 TET3O43151 1660 aa22.39■■□□□ 1.17
USP48-204ENST00000400301 PROSER2Q86WR7 435 aaPredicted RBP22.39■■□□□ 1.17
USP48-204ENST00000400301 FSD1Q9BTV5 496 aa22.39■■□□□ 1.17
USP48-204ENST00000400301 C16orf71Q8IYS4 520 aaPredicted RBP22.39■■□□□ 1.17
USP48-204ENST00000400301 ATF3P18847 181 aa22.38■■□□□ 1.17
USP48-204ENST00000400301 UPF3BQ9BZI7 483 aaKnown RBP22.38■■□□□ 1.17
USP48-204ENST00000400301 ZSCAN21Q9Y5A6 473 aaPredicted RBP22.38■■□□□ 1.17
USP48-204ENST00000400301 RBM42Q9BTD8 480 aaKnown RBP22.38■■□□□ 1.17
USP48-204ENST00000400301 KIF3AQ9Y496 699 aa22.38■■□□□ 1.17
USP48-204ENST00000400301 TSHZ3Q63HK5 1081 aa22.37■■□□□ 1.17
USP48-204ENST00000400301 YEATS2Q9ULM3 1422 aa22.37■■□□□ 1.17
USP48-204ENST00000400301 NRDCO43847 1150 aa22.37■■□□□ 1.17
USP48-204ENST00000400301 PHF8Q9UPP1 1060 aa22.37■■□□□ 1.17
USP48-204ENST00000400301 NEO1Q92859 1461 aa22.36■■□□□ 1.17
USP48-204ENST00000400301 SDSP20132 328 aa22.36■■□□□ 1.17
USP48-204ENST00000400301 ERC1Q8IUD2 1116 aa22.36■■□□□ 1.17
USP48-204ENST00000400301 PLEKHF1Q96S99 279 aa22.35■■□□□ 1.17
USP48-204ENST00000400301 SHROOM2Q13796 1616 aa22.35■■□□□ 1.17
USP48-204ENST00000400301 FOXO3O43524 673 aa22.35■■□□□ 1.17
USP48-204ENST00000400301 ARID3AQ99856 593 aa22.35■■□□□ 1.17
USP48-204ENST00000400301 DCTPP1Q9H773 170 aa22.35■■□□□ 1.17
USP48-204ENST00000400301 SIL1Q9H173 461 aa22.35■■□□□ 1.17
USP48-204ENST00000400301 MLH3Q9UHC1 1453 aa22.35■■□□□ 1.17
USP48-204ENST00000400301 CWC27Q6UX04 472 aaKnown RBP22.34■■□□□ 1.17
USP48-204ENST00000400301 ANO8Q9HCE9 1232 aaPredicted RBP22.34■■□□□ 1.17
USP48-204ENST00000400301 KIF1BO60333 1816 aa22.34■■□□□ 1.17
USP48-204ENST00000400301 NEUROD6Q96NK8 337 aa22.34■■□□□ 1.17
USP48-204ENST00000400301 MTHFSDQ2M296 383 aaKnown RBP22.34■■□□□ 1.17
USP48-204ENST00000400301 KIF1BPQ96EK5 621 aa22.33■■□□□ 1.17
USP48-204ENST00000400301 ZMYM3Q14202 1370 aa22.33■■□□□ 1.17
USP48-204ENST00000400301 EDC4Q6P2E9 1401 aaKnown RBP22.33■■□□□ 1.17
USP48-204ENST00000400301 SNX21Q969T3 373 aa22.33■■□□□ 1.16
USP48-204ENST00000400301 KCNH5Q8NCM2 988 aa22.33■■□□□ 1.16
USP48-204ENST00000400301 POLR1AO95602 1720 aaPredicted RBP22.32■■□□□ 1.16
USP48-204ENST00000400301 TTC21AQ8NDW8 1320 aa22.32■■□□□ 1.16
USP48-204ENST00000400301 MADDQ8WXG6 1647 aa22.32■■□□□ 1.16
USP48-204ENST00000400301 EFCAB6Q5THR3 1501 aa22.32■■□□□ 1.16
USP48-204ENST00000400301 CCDC173Q0VFZ6 552 aa22.32■■□□□ 1.16
USP48-204ENST00000400301 MAP3K4Q9Y6R4 1608 aa22.31■■□□□ 1.16
USP48-204ENST00000400301 MPRIPQ6WCQ1 1025 aa22.31■■□□□ 1.16
USP48-204ENST00000400301 ARAP3Q8WWN8 1544 aa22.31■■□□□ 1.16
USP48-204ENST00000400301 NPHP1O15259 732 aa22.31■■□□□ 1.16
USP48-204ENST00000400301 FIBPO43427 364 aa22.31■■□□□ 1.16
USP48-204ENST00000400301 MYL6BP14649 208 aa22.31■■□□□ 1.16
USP48-204ENST00000400301 TATP17735 454 aaPredicted RBP22.31■■□□□ 1.16
USP48-204ENST00000400301 EVA1CP58658 441 aa22.31■■□□□ 1.16
USP48-204ENST00000400301 ZC3H6P61129 1189 aaKnown RBP22.31■■□□□ 1.16
USP48-204ENST00000400301 SF3A1Q15459 793 aaKnown RBP22.31■■□□□ 1.16
USP48-204ENST00000400301 CEP85Q6P2H3 762 aa22.31■■□□□ 1.16
USP48-204ENST00000400301 AACSQ86V21 672 aa22.31■■□□□ 1.16
USP48-204ENST00000400301 PSMA5P28066 241 aa22.3■■□□□ 1.16
USP48-204ENST00000400301 HSP90AA2PQ14568 343 aaPredicted RBP22.3■■□□□ 1.16
USP48-204ENST00000400301 PLEKHM2Q8IWE5 1019 aa22.3■■□□□ 1.16
USP48-204ENST00000400301 WDR33Q9C0J8 1336 aaKnown RBP22.3■■□□□ 1.16
USP48-204ENST00000400301 DNAAF4Q8WXU2 420 aa22.29■■□□□ 1.16
USP48-204ENST00000400301 RAB11FIP3O75154 756 aa22.29■■□□□ 1.16
USP48-204ENST00000400301 MAP3K19Q56UN5 1328 aa22.29■■□□□ 1.16
USP48-204ENST00000400301 BICD2Q8TD16 824 aa22.29■■□□□ 1.16
USP48-204ENST00000400301 ESPNB1AK53 854 aa22.28■■□□□ 1.16
USP48-204ENST00000400301 PDE1AP54750 535 aa22.28■■□□□ 1.16
USP48-204ENST00000400301 CYP46A1Q9Y6A2 500 aa22.28■■□□□ 1.16
USP48-204ENST00000400301 HIP1O00291 1037 aa22.28■■□□□ 1.16
USP48-204ENST00000400301 SPHKAPQ2M3C7 1700 aa22.28■■□□□ 1.16
USP48-204ENST00000400301 BAG4O95429 457 aaKnown RBP22.27■■□□□ 1.16
USP48-204ENST00000400301 E9PCH4 1651 aa22.27■■□□□ 1.16
USP48-204ENST00000400301 EYA1Q99502 592 aa22.27■■□□□ 1.16
USP48-204ENST00000400301 DNAJC2Q99543 621 aaKnown RBP22.27■■□□□ 1.16
USP48-204ENST00000400301 ANXA1P04083 346 aa22.27■■□□□ 1.15
USP48-204ENST00000400301 PPP1R42Q7Z4L9 355 aa22.26■■□□□ 1.15
USP48-204ENST00000400301 GLRX3O76003 335 aaKnown RBP22.26■■□□□ 1.15
USP48-204ENST00000400301 TSPY26PQ9H489 355 aa22.26■■□□□ 1.15
USP48-204ENST00000400301 FLT4P35916 1363 aa22.26■■□□□ 1.15
USP48-204ENST00000400301 PI4KAP2A4QPH2 592 aa22.25■■□□□ 1.15
USP48-204ENST00000400301 RBM25P49756 843 aaKnown RBP22.25■■□□□ 1.15
USP48-204ENST00000400301 PI4KAP1Q8N8J0 262 aa22.25■■□□□ 1.15
USP48-204ENST00000400301 JAKMIP1Q96N16 626 aaKnown RBP22.25■■□□□ 1.15
USP48-204ENST00000400301 FOSBP53539 338 aa22.25■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms