RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 USP47Q96K76 1375 aa14.46□□□□□ -0.1
NEDD8-202ENST00000396828 USHBP1Q8N6Y0 703 aa14.45□□□□□ -0.1
NEDD8-202ENST00000396828 PRIM1P49642 420 aaKnown RBP14.44□□□□□ -0.1
NEDD8-202ENST00000396828 FHDC1Q9C0D6 1143 aaPredicted RBP14.44□□□□□ -0.1
NEDD8-202ENST00000396828 MTFR1LQ9H019 292 aa14.44□□□□□ -0.1
NEDD8-202ENST00000396828 NSD2O96028 1365 aa14.44□□□□□ -0.1
NEDD8-202ENST00000396828 DOT1LQ8TEK3 1739 aa14.44□□□□□ -0.1
NEDD8-202ENST00000396828 TMF1P82094 1093 aa14.43□□□□□ -0.1
NEDD8-202ENST00000396828 AKT1S1Q96B36 256 aa14.43□□□□□ -0.1
NEDD8-202ENST00000396828 SYTL4Q96C24 671 aaPredicted RBP14.43□□□□□ -0.1
NEDD8-202ENST00000396828 SYT17Q9BSW7 474 aa14.43□□□□□ -0.1
NEDD8-202ENST00000396828 HSP90AB2PQ58FF8 381 aa14.42□□□□□ -0.1
NEDD8-202ENST00000396828 ZCRB1Q8TBF4 217 aaKnown RBP14.42□□□□□ -0.1
NEDD8-202ENST00000396828 CARD14Q9BXL6 1004 aa14.42□□□□□ -0.1
NEDD8-202ENST00000396828 TUBGCP6Q96RT7 1819 aa14.41□□□□□ -0.1
NEDD8-202ENST00000396828 SLC24A1O60721 1099 aa14.4□□□□□ -0.1
NEDD8-202ENST00000396828 KIF20BQ96Q89 1820 aa14.4□□□□□ -0.1
NEDD8-202ENST00000396828 LY75O60449 1722 aa14.4□□□□□ -0.1
NEDD8-202ENST00000396828 PNPLA7Q6ZV29 1317 aa14.4□□□□□ -0.1
NEDD8-202ENST00000396828 RTL1A6NKG5 1358 aa14.39□□□□□ -0.11
NEDD8-202ENST00000396828 ARXQ96QS3 562 aa14.39□□□□□ -0.11
NEDD8-202ENST00000396828 DCAF8L1A6NGE4 600 aa14.38□□□□□ -0.11
NEDD8-202ENST00000396828 SLC27A3Q5K4L6 730 aa14.37□□□□□ -0.11
NEDD8-202ENST00000396828 EMILIN1Q9Y6C2 1016 aa14.37□□□□□ -0.11
NEDD8-202ENST00000396828 QSER1Q2KHR3 1735 aa14.37□□□□□ -0.11
NEDD8-202ENST00000396828 INSRP06213 1382 aa14.36□□□□□ -0.11
NEDD8-202ENST00000396828 COL24A1Q17RW2 1714 aa14.36□□□□□ -0.11
NEDD8-202ENST00000396828 NSD3Q9BZ95 1437 aa14.36□□□□□ -0.11
NEDD8-202ENST00000396828 TFCP2L1Q9NZI6 479 aa14.35□□□□□ -0.11
NEDD8-202ENST00000396828 FLT4P35916 1363 aa14.34□□□□□ -0.11
NEDD8-202ENST00000396828 CYP27B1O15528 508 aa14.34□□□□□ -0.11
NEDD8-202ENST00000396828 TATP17735 454 aaPredicted RBP14.34□□□□□ -0.11
NEDD8-202ENST00000396828 RAPGEF4Q8WZA2 1011 aa14.34□□□□□ -0.11
NEDD8-202ENST00000396828 CCNL1Q9UK58 526 aaPredicted RBP14.34□□□□□ -0.11
NEDD8-202ENST00000396828 TOGARAM1Q9Y4F4 1720 aa14.34□□□□□ -0.11
NEDD8-202ENST00000396828 CGNL1Q0VF96 1302 aa14.33□□□□□ -0.12
NEDD8-202ENST00000396828 MAP3K5Q99683 1374 aa14.33□□□□□ -0.12
NEDD8-202ENST00000396828 SMG6Q86US8 1419 aaKnown RBP14.32□□□□□ -0.12
NEDD8-202ENST00000396828 PPM1GO15355 546 aaPredicted RBP14.32□□□□□ -0.12
NEDD8-202ENST00000396828 CDCA8Q53HL2 280 aa14.32□□□□□ -0.12
NEDD8-202ENST00000396828 COL23A1Q86Y22 540 aaPredicted RBP14.32□□□□□ -0.12
NEDD8-202ENST00000396828 KLHL34Q8N239 644 aa14.32□□□□□ -0.12
NEDD8-202ENST00000396828 SLC16A10Q8TF71 515 aa14.32□□□□□ -0.12
NEDD8-202ENST00000396828 MPRIPQ6WCQ1 1025 aa14.31□□□□□ -0.12
NEDD8-202ENST00000396828 ZNF784Q8NCA9 323 aaPredicted RBP14.31□□□□□ -0.12
NEDD8-202ENST00000396828 NLGN2Q8NFZ4 835 aa14.31□□□□□ -0.12
NEDD8-202ENST00000396828 ITGB4P16144 1822 aa14.31□□□□□ -0.12
NEDD8-202ENST00000396828 KIF24Q5T7B8 1368 aa14.31□□□□□ -0.12
NEDD8-202ENST00000396828 ANKRD26Q9UPS8 1709 aa14.3□□□□□ -0.12
NEDD8-202ENST00000396828 MAP2P11137 1827 aaKnown RBP14.3□□□□□ -0.12
NEDD8-202ENST00000396828 SMIM5Q71RC9 77 aa14.3□□□□□ -0.12
NEDD8-202ENST00000396828 AMIGO3Q86WK7 504 aa14.3□□□□□ -0.12
NEDD8-202ENST00000396828 CHD4Q14839 1912 aa14.3□□□□□ -0.12
NEDD8-202ENST00000396828 PCDH11XQ9BZA7 1347 aa14.3□□□□□ -0.12
NEDD8-202ENST00000396828 PCDH11YQ9BZA8 1340 aa14.3□□□□□ -0.12
NEDD8-202ENST00000396828 C5P01031 1676 aa14.3□□□□□ -0.12
NEDD8-202ENST00000396828 PKD1L3Q7Z443 1732 aa14.29□□□□□ -0.12
NEDD8-202ENST00000396828 TAF1LQ8IZX4 1826 aa14.29□□□□□ -0.12
NEDD8-202ENST00000396828 POLD1P28340 1107 aa14.29□□□□□ -0.12
NEDD8-202ENST00000396828 POLR3GLQ9BT43 218 aa14.29□□□□□ -0.12
NEDD8-202ENST00000396828 NCAPD2Q15021 1401 aa14.29□□□□□ -0.12
NEDD8-202ENST00000396828 MSH5O43196 834 aa14.28□□□□□ -0.12
NEDD8-202ENST00000396828 WASHC2AQ641Q2 1341 aa14.28□□□□□ -0.12
NEDD8-202ENST00000396828 MSL1Q68DK7 614 aa14.28□□□□□ -0.12
NEDD8-202ENST00000396828 PALLDQ8WX93 1383 aa14.28□□□□□ -0.12
NEDD8-202ENST00000396828 EYA1Q99502 592 aa14.28□□□□□ -0.12
NEDD8-202ENST00000396828 POLKQ9UBT6 870 aa14.28□□□□□ -0.12
NEDD8-202ENST00000396828 TNNT2P45379 298 aaPredicted RBP14.27□□□□□ -0.13
NEDD8-202ENST00000396828 GPR162Q16538 588 aa14.27□□□□□ -0.13
NEDD8-202ENST00000396828 PIGBQ92521 554 aa14.27□□□□□ -0.13
NEDD8-202ENST00000396828 C4BP0C0L5 1744 aa14.25□□□□□ -0.13
NEDD8-202ENST00000396828 NKX1-1Q15270 411 aaPredicted RBP14.25□□□□□ -0.13
NEDD8-202ENST00000396828 PELP1Q8IZL8 1130 aaKnown RBP14.25□□□□□ -0.13
NEDD8-202ENST00000396828 YBX3P16989 372 aaKnown RBP eCLIP14.24□□□□□ -0.13
NEDD8-202ENST00000396828 EIF4A2Q14240 407 aaKnown RBP14.24□□□□□ -0.13
NEDD8-202ENST00000396828 HSPA5P11021 654 aaKnown RBP14.23□□□□□ -0.13
NEDD8-202ENST00000396828 CEP350Q5VT06 3117 aa14.23□□□□□ -0.13
NEDD8-202ENST00000396828 UBR3Q6ZT12 1888 aa14.23□□□□□ -0.13
NEDD8-202ENST00000396828 PHKG2P15735 406 aa14.22□□□□□ -0.13
NEDD8-202ENST00000396828 LINC00116Q8NCU8 138 aa14.22□□□□□ -0.13
NEDD8-202ENST00000396828 PANK3Q9H999 370 aa14.22□□□□□ -0.13
NEDD8-202ENST00000396828 ASAP1Q9ULH1 1129 aa14.22□□□□□ -0.13
NEDD8-202ENST00000396828 SPG7Q9UQ90 795 aa14.22□□□□□ -0.13
NEDD8-202ENST00000396828 ITPK1Q13572 414 aa14.21□□□□□ -0.13
NEDD8-202ENST00000396828 LOC102724428A0A0B4J2F2 783 aa14.2□□□□□ -0.14
NEDD8-202ENST00000396828 PHF14O94880 888 aa14.2□□□□□ -0.14
NEDD8-202ENST00000396828 SIK1P57059 783 aa14.2□□□□□ -0.14
NEDD8-202ENST00000396828 SMARCC1Q92922 1105 aaPredicted RBP14.2□□□□□ -0.14
NEDD8-202ENST00000396828 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.2□□□□□ -0.146e-8■■□□□ 11.8
NEDD8-202ENST00000396828 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.19□□□□□ -0.14
NEDD8-202ENST00000396828 EIF4G2P78344 907 aaKnown RBP eCLIP14.19□□□□□ -0.14
NEDD8-202ENST00000396828 IFNL2Q8IZJ0 200 aa14.19□□□□□ -0.14
NEDD8-202ENST00000396828 AK7Q96M32 723 aa14.19□□□□□ -0.14
NEDD8-202ENST00000396828 ATG3Q9NT62 314 aa14.19□□□□□ -0.14
NEDD8-202ENST00000396828 TMOD3Q9NYL9 352 aa14.19□□□□□ -0.14
NEDD8-202ENST00000396828 PIAS4Q8N2W9 510 aaPredicted RBP14.18□□□□□ -0.14
NEDD8-202ENST00000396828 SLC4A9Q96Q91 983 aa14.18□□□□□ -0.14
NEDD8-202ENST00000396828 IGSF1Q8N6C5 1336 aa14.17□□□□□ -0.14
NEDD8-202ENST00000396828 FLAD1Q8NFF5 587 aa14.17□□□□□ -0.14
NEDD8-202ENST00000396828 WWC3Q9ULE0 1092 aa14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms