RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 NGEFQ8N5V2 710 aa9.46□□□□□ -0.89
LIMA1-202ENST00000394943 C8orf37Q96NL8 207 aa9.46□□□□□ -0.89
LIMA1-202ENST00000394943 KCPQ6ZWJ8 1503 aa9.46□□□□□ -0.9
LIMA1-202ENST00000394943 CCDC27Q2M243 656 aa9.46□□□□□ -0.9
LIMA1-202ENST00000394943 NGLY1Q96IV0 654 aa9.46□□□□□ -0.9
LIMA1-202ENST00000394943 CFAP53Q96M91 514 aa9.46□□□□□ -0.9
LIMA1-202ENST00000394943 SOCS7O14512 581 aa9.45□□□□□ -0.9
LIMA1-202ENST00000394943 QTRT2Q9H974 415 aaKnown RBP9.45□□□□□ -0.9
LIMA1-202ENST00000394943 AMOTQ4VCS5 1084 aa9.45□□□□□ -0.9
LIMA1-202ENST00000394943 ADAMTS2O95450 1211 aa9.45□□□□□ -0.9
LIMA1-202ENST00000394943 IL2RBP14784 551 aa9.45□□□□□ -0.9
LIMA1-202ENST00000394943 ANP32CO43423 234 aa9.44□□□□□ -0.9
LIMA1-202ENST00000394943 N4BP2Q86UW6 1770 aaPredicted RBP9.44□□□□□ -0.9
LIMA1-202ENST00000394943 NUTM2BA6NNL0 878 aaPredicted RBP9.44□□□□□ -0.9
LIMA1-202ENST00000394943 NUTM2EB1AL46 878 aaPredicted RBP9.44□□□□□ -0.9
LIMA1-202ENST00000394943 NUTM2AQ8IVF1 878 aaPredicted RBP9.44□□□□□ -0.9
LIMA1-202ENST00000394943 ZNF521Q96K83 1311 aa9.43□□□□□ -0.9
LIMA1-202ENST00000394943 HEG1Q9ULI3 1381 aa9.43□□□□□ -0.9
LIMA1-202ENST00000394943 PCDH11XQ9BZA7 1347 aa9.43□□□□□ -0.9
LIMA1-202ENST00000394943 PCDH11YQ9BZA8 1340 aa9.43□□□□□ -0.9
LIMA1-202ENST00000394943 MEX3CQ5U5Q3 659 aaKnown RBP9.43□□□□□ -0.9
LIMA1-202ENST00000394943 PNNQ9H307 717 aaKnown RBP9.43□□□□□ -0.9
LIMA1-202ENST00000394943 BABAM1Q9NWV8 329 aa9.43□□□□□ -0.9
LIMA1-202ENST00000394943 RXRBP28702 533 aa9.43□□□□□ -0.9
LIMA1-202ENST00000394943 TUBGCP6Q96RT7 1819 aa9.42□□□□□ -0.9
LIMA1-202ENST00000394943 LMOD2Q6P5Q4 547 aa9.42□□□□□ -0.9
LIMA1-202ENST00000394943 CASZ1Q86V15 1759 aa9.42□□□□□ -0.9
LIMA1-202ENST00000394943 POLR3GLQ9BT43 218 aa9.42□□□□□ -0.9
LIMA1-202ENST00000394943 NUDCQ9Y266 331 aa9.42□□□□□ -0.9
LIMA1-202ENST00000394943 BCORQ6W2J9 1755 aa9.41□□□□□ -0.9
LIMA1-202ENST00000394943 MAP3K5Q99683 1374 aa9.41□□□□□ -0.9
LIMA1-202ENST00000394943 PHKG2P15735 406 aa9.41□□□□□ -0.9
LIMA1-202ENST00000394943 CCDC184Q52MB2 194 aa9.41□□□□□ -0.9
LIMA1-202ENST00000394943 AKAP4Q5JQC9 854 aa9.41□□□□□ -0.9
LIMA1-202ENST00000394943 DIEXFQ68CQ4 756 aaKnown RBP9.4□□□□□ -0.9
LIMA1-202ENST00000394943 HAP1P54257 671 aaPredicted RBP9.4□□□□□ -0.9
LIMA1-202ENST00000394943 TOM1L2Q6ZVM7 507 aa9.4□□□□□ -0.9
LIMA1-202ENST00000394943 CYP27B1O15528 508 aa9.4□□□□□ -0.91
LIMA1-202ENST00000394943 MARCH10Q8NA82 808 aaPredicted RBP9.4□□□□□ -0.91
LIMA1-202ENST00000394943 ERVV-2B6SEH9 535 aa9.39□□□□□ -0.91
LIMA1-202ENST00000394943 TATP17735 454 aaPredicted RBP9.39□□□□□ -0.91
LIMA1-202ENST00000394943 EVA1CP58658 441 aa9.39□□□□□ -0.91
LIMA1-202ENST00000394943 CCDC125Q86Z20 511 aa9.39□□□□□ -0.91
LIMA1-202ENST00000394943 SEPT12Q8IYM1 358 aa9.39□□□□□ -0.91
LIMA1-202ENST00000394943 RUNDC1Q96C34 613 aa9.39□□□□□ -0.91
LIMA1-202ENST00000394943 IL16Q14005 1332 aa9.39□□□□□ -0.91
LIMA1-202ENST00000394943 ZCRB1Q8TBF4 217 aaKnown RBP9.39□□□□□ -0.91
LIMA1-202ENST00000394943 SPG7Q9UQ90 795 aa9.39□□□□□ -0.91
LIMA1-202ENST00000394943 UBR3Q6ZT12 1888 aa9.39□□□□□ -0.91
LIMA1-202ENST00000394943 AEBP1Q8IUX7 1158 aa9.38□□□□□ -0.91
LIMA1-202ENST00000394943 GAS2L2Q8NHY3 880 aa9.38□□□□□ -0.91
LIMA1-202ENST00000394943 HSP90AB1P08238 724 aaKnown RBP9.38□□□□□ -0.91
LIMA1-202ENST00000394943 PLEKHO1Q53GL0 409 aaPredicted RBP9.38□□□□□ -0.91
LIMA1-202ENST00000394943 CACNA1FO60840 1977 aa9.38□□□□□ -0.91
LIMA1-202ENST00000394943 ZNF853P0CG23 659 aa9.37□□□□□ -0.91
LIMA1-202ENST00000394943 NFE2L2Q16236 605 aa9.37□□□□□ -0.91
LIMA1-202ENST00000394943 SULT6B1Q6IMI4 303 aa9.37□□□□□ -0.91
LIMA1-202ENST00000394943 ADAMTS8Q9UP79 889 aa9.37□□□□□ -0.91
LIMA1-202ENST00000394943 SCN7AQ01118 1682 aa9.37□□□□□ -0.91
LIMA1-202ENST00000394943 IBTKQ9P2D0 1353 aaPredicted RBP9.37□□□□□ -0.91
LIMA1-202ENST00000394943 C4BP0C0L5 1744 aa9.37□□□□□ -0.91
LIMA1-202ENST00000394943 MTHFSDQ2M296 383 aaKnown RBP9.37□□□□□ -0.91
LIMA1-202ENST00000394943 DCAF5Q96JK2 942 aa9.37□□□□□ -0.91
LIMA1-202ENST00000394943 TRMT2AQ8IZ69 625 aaKnown RBP9.36□□□□□ -0.91
LIMA1-202ENST00000394943 IFNL2Q8IZJ0 200 aa9.36□□□□□ -0.91
LIMA1-202ENST00000394943 SOS1Q07889 1333 aaPredicted RBP9.36□□□□□ -0.91
LIMA1-202ENST00000394943 PHACTR3Q96KR7 559 aa9.36□□□□□ -0.91
LIMA1-202ENST00000394943 NLRP2Q9NX02 1062 aa9.36□□□□□ -0.91
LIMA1-202ENST00000394943 TRIM35Q9UPQ4 493 aa9.36□□□□□ -0.91
LIMA1-202ENST00000394943 C4AP0C0L4 1744 aa9.36□□□□□ -0.91
LIMA1-202ENST00000394943 DDB1Q16531 1140 aa9.36□□□□□ -0.91
LIMA1-202ENST00000394943 FAM196AQ6ZSG2 479 aa9.36□□□□□ -0.91
LIMA1-202ENST00000394943 KRT27Q7Z3Y8 459 aa9.36□□□□□ -0.91
LIMA1-202ENST00000394943 STRN4Q9NRL3 753 aa9.36□□□□□ -0.91
LIMA1-202ENST00000394943 EXOC5O00471 708 aa9.35□□□□□ -0.91
LIMA1-202ENST00000394943 FAM98CQ17RN3 349 aaKnown RBP9.35□□□□□ -0.91
LIMA1-202ENST00000394943 RAPGEF4Q8WZA2 1011 aa9.35□□□□□ -0.91
LIMA1-202ENST00000394943 BCL11BQ9C0K0 894 aaPredicted RBP9.35□□□□□ -0.91
LIMA1-202ENST00000394943 NRXN2Q9P2S2 1712 aa9.35□□□□□ -0.91
LIMA1-202ENST00000394943 PLSCR1O15162 318 aa9.35□□□□□ -0.91
LIMA1-202ENST00000394943 TNNT2P45379 298 aaPredicted RBP9.35□□□□□ -0.91
LIMA1-202ENST00000394943 ILDR2Q71H61 639 aa9.35□□□□□ -0.91
LIMA1-202ENST00000394943 PRKAR2BP31323 418 aa9.35□□□□□ -0.91
LIMA1-202ENST00000394943 RNMTO43148 476 aaKnown RBP9.34□□□□□ -0.91
LIMA1-202ENST00000394943 TMPOP42166 694 aaKnown RBP9.34□□□□□ -0.91
LIMA1-202ENST00000394943 MIER1Q8N108 512 aa9.34□□□□□ -0.91
LIMA1-202ENST00000394943 GNAT3A8MTJ3 354 aa9.33□□□□□ -0.92
LIMA1-202ENST00000394943 RGL2O15211 777 aa9.33□□□□□ -0.92
LIMA1-202ENST00000394943 CSB-PGBD3P0DP91 1061 aa9.33□□□□□ -0.92
LIMA1-202ENST00000394943 WDR63Q8IWG1 891 aa9.33□□□□□ -0.92
LIMA1-202ENST00000394943 USHBP1Q8N6Y0 703 aa9.33□□□□□ -0.92
LIMA1-202ENST00000394943 IL17REQ8NFR9 667 aa9.33□□□□□ -0.92
LIMA1-202ENST00000394943 ANKRD36CQ5JPF3 1778 aa9.33□□□□□ -0.92
LIMA1-202ENST00000394943 KIF13BQ9NQT8 1826 aa9.32□□□□□ -0.92
LIMA1-202ENST00000394943 LRP5O75197 1615 aa9.32□□□□□ -0.92
LIMA1-202ENST00000394943 LMOD3Q0VAK6 560 aa9.32□□□□□ -0.92
LIMA1-202ENST00000394943 VSIG10Q8N0Z9 540 aa9.32□□□□□ -0.92
LIMA1-202ENST00000394943 SLC52A2Q9HAB3 445 aa9.32□□□□□ -0.92
LIMA1-202ENST00000394943 SOX12O15370 315 aa9.32□□□□□ -0.92
LIMA1-202ENST00000394943 HMGB2P26583 209 aaKnown RBP9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms