RNA–Protein interactions for RNA: ENST00000393118.6

CALD1-203, Transcript of caldesmon 1, humanhuman

TSL 1 (best) BASIC

Gene CALD1, Length 4,281 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CALD1-203ENST00000393118 K7ELQ4 463 aaPredicted RBP12.87□□□□□ -0.35
CALD1-203ENST00000393118 NEK4P51957 841 aa12.87□□□□□ -0.35
CALD1-203ENST00000393118 FGD1P98174 961 aa12.87□□□□□ -0.35
CALD1-203ENST00000393118 PHF23Q9BUL5 403 aaPredicted RBP12.86□□□□□ -0.35
CALD1-203ENST00000393118 NLRP2Q9NX02 1062 aa12.86□□□□□ -0.35
CALD1-203ENST00000393118 MAP3K19Q56UN5 1328 aa12.86□□□□□ -0.35
CALD1-203ENST00000393118 CHMP4AQ9BY43 222 aa12.86□□□□□ -0.35
CALD1-203ENST00000393118 NAP1L2Q9ULW6 460 aaPredicted RBP12.86□□□□□ -0.35
CALD1-203ENST00000393118 EDC4Q6P2E9 1401 aaKnown RBP12.86□□□□□ -0.35
CALD1-203ENST00000393118 GLI2P10070 1586 aa12.86□□□□□ -0.35
CALD1-203ENST00000393118 LRRCC1Q9C099 1032 aa12.85□□□□□ -0.35
CALD1-203ENST00000393118 TSPOAP1O95153 1857 aa12.85□□□□□ -0.35
CALD1-203ENST00000393118 ANKLE2Q86XL3 938 aa12.85□□□□□ -0.35
CALD1-203ENST00000393118 FLIIQ13045 1269 aa12.84□□□□□ -0.35
CALD1-203ENST00000393118 RABEP1Q15276 862 aa12.84□□□□□ -0.35
CALD1-203ENST00000393118 ANXA1P04083 346 aa12.84□□□□□ -0.35
CALD1-203ENST00000393118 EYA1Q99502 592 aa12.84□□□□□ -0.35
CALD1-203ENST00000393118 PRDM10Q9NQV6 1147 aa12.84□□□□□ -0.35
CALD1-203ENST00000393118 PHF8Q9UPP1 1060 aa12.84□□□□□ -0.35
CALD1-203ENST00000393118 QRICH2Q9H0J4 1663 aa12.84□□□□□ -0.35
CALD1-203ENST00000393118 TULP4Q9NRJ4 1543 aa12.83□□□□□ -0.36
CALD1-203ENST00000393118 PTMSP20962 102 aa12.83□□□□□ -0.36
CALD1-203ENST00000393118 ZC3H6P61129 1189 aaKnown RBP12.83□□□□□ -0.36
CALD1-203ENST00000393118 G2E3Q7L622 706 aa12.83□□□□□ -0.36
CALD1-203ENST00000393118 SRCIN1Q9C0H9 1055 aa12.83□□□□□ -0.36
CALD1-203ENST00000393118 DIAPH3Q9NSV4 1193 aa12.83□□□□□ -0.36
CALD1-203ENST00000393118 ZHX1Q9UKY1 873 aaPredicted RBP12.83□□□□□ -0.36
CALD1-203ENST00000393118 ERC2O15083 957 aa12.83□□□□□ -0.36
CALD1-203ENST00000393118 KCNA6P17658 529 aa12.83□□□□□ -0.36
CALD1-203ENST00000393118 MPRIPQ6WCQ1 1025 aa12.83□□□□□ -0.36
CALD1-203ENST00000393118 OTUD7AQ8TE49 926 aaPredicted RBP12.83□□□□□ -0.36
CALD1-203ENST00000393118 GPATCH3Q96I76 525 aa12.83□□□□□ -0.36
CALD1-203ENST00000393118 R3HCC1Q9Y3T6 440 aaKnown RBP12.83□□□□□ -0.36
CALD1-203ENST00000393118 LMTK2Q8IWU2 1503 aa12.83□□□□□ -0.36
CALD1-203ENST00000393118 SRGAP3O43295 1099 aa12.82□□□□□ -0.36
CALD1-203ENST00000393118 TAF7Q15545 349 aaPredicted RBP12.82□□□□□ -0.36
CALD1-203ENST00000393118 PROSER2Q86WR7 435 aaPredicted RBP12.82□□□□□ -0.36
CALD1-203ENST00000393118 NUTM1Q86Y26 1132 aa12.82□□□□□ -0.36
CALD1-203ENST00000393118 RAPGEF4Q8WZA2 1011 aa12.82□□□□□ -0.36
CALD1-203ENST00000393118 LRRFIP2Q9Y608 721 aaKnown RBP12.82□□□□□ -0.36
CALD1-203ENST00000393118 PRR36Q9H6K5 1346 aa12.82□□□□□ -0.36
CALD1-203ENST00000393118 ARHGAP31Q2M1Z3 1444 aa12.82□□□□□ -0.36
CALD1-203ENST00000393118 IFIT2P09913 472 aaKnown RBP12.82□□□□□ -0.36
CALD1-203ENST00000393118 PLEKHO1Q53GL0 409 aaPredicted RBP12.82□□□□□ -0.36
CALD1-203ENST00000393118 ESPNB1AK53 854 aa12.82□□□□□ -0.36
CALD1-203ENST00000393118 SKOR2Q2VWA4 1001 aaPredicted RBP12.82□□□□□ -0.36
CALD1-203ENST00000393118 NCBP3Q53F19 620 aaKnown RBP12.82□□□□□ -0.36
CALD1-203ENST00000393118 ANKRD44Q8N8A2 993 aa12.81□□□□□ -0.36
CALD1-203ENST00000393118 PTPRCP08575 1304 aa12.81□□□□□ -0.36
CALD1-203ENST00000393118 BTBD11A6QL63 1104 aa12.81□□□□□ -0.36
CALD1-203ENST00000393118 TPM2P07951 284 aa12.81□□□□□ -0.36
CALD1-203ENST00000393118 NUCB2P80303 420 aa12.81□□□□□ -0.36
CALD1-203ENST00000393118 SDSP20132 328 aa12.8□□□□□ -0.36
CALD1-203ENST00000393118 TTC22Q5TAA0 569 aa12.8□□□□□ -0.36
CALD1-203ENST00000393118 TNPO1Q92973 898 aaKnown RBP12.8□□□□□ -0.36
CALD1-203ENST00000393118 RIC3Q7Z5B4 369 aa12.8□□□□□ -0.36
CALD1-203ENST00000393118 TMEM2Q9UHN6 1383 aa12.8□□□□□ -0.36
CALD1-203ENST00000393118 MAPK8IP2Q13387 824 aaPredicted RBP12.8□□□□□ -0.36
CALD1-203ENST00000393118 CEP85Q6P2H3 762 aa12.8□□□□□ -0.36
CALD1-203ENST00000393118 SETBP1Q9Y6X0 1596 aa12.8□□□□□ -0.36
CALD1-203ENST00000393118 SSFA2P28290 1259 aa12.79□□□□□ -0.36
CALD1-203ENST00000393118 NEXNQ0ZGT2 675 aa12.79□□□□□ -0.36
CALD1-203ENST00000393118 TTC5Q8N0Z6 440 aa12.79□□□□□ -0.36
CALD1-203ENST00000393118 HDAC5Q9UQL6 1122 aa12.79□□□□□ -0.36
CALD1-203ENST00000393118 PLEKHM2Q8IWE5 1019 aa12.79□□□□□ -0.36
CALD1-203ENST00000393118 UPF3BQ9BZI7 483 aaKnown RBP12.79□□□□□ -0.36
CALD1-203ENST00000393118 DCTPP1Q9H773 170 aa12.79□□□□□ -0.36
CALD1-203ENST00000393118 VWDEQ8N2E2 1590 aa12.79□□□□□ -0.36
CALD1-203ENST00000393118 CHL1O00533 1208 aa12.79□□□□□ -0.36
CALD1-203ENST00000393118 CAVIN1Q6NZI2 390 aaKnown RBP12.79□□□□□ -0.36
CALD1-203ENST00000393118 MROH2AA6NES4 1674 aa12.79□□□□□ -0.36
CALD1-203ENST00000393118 MX1P20591 662 aa12.79□□□□□ -0.36
CALD1-203ENST00000393118 USP19O94966 1318 aa12.79□□□□□ -0.36
CALD1-203ENST00000393118 ROBO2Q9HCK4 1378 aa12.79□□□□□ -0.36
CALD1-203ENST00000393118 PRPF40AO75400 957 aaKnown RBP12.78□□□□□ -0.36
CALD1-203ENST00000393118 G3BP1Q13283 466 aaKnown RBP eCLIP12.78□□□□□ -0.368e-9■□□□□ 9.6
CALD1-203ENST00000393118 CLASRPQ8N2M8 674 aaKnown RBP12.78□□□□□ -0.36
CALD1-203ENST00000393118 SIL1Q9H173 461 aa12.78□□□□□ -0.36
CALD1-203ENST00000393118 DDX58O95786 925 aaKnown RBP12.78□□□□□ -0.36
CALD1-203ENST00000393118 MYL6BP14649 208 aa12.78□□□□□ -0.36
CALD1-203ENST00000393118 PANK2Q9BZ23 570 aa12.78□□□□□ -0.36
CALD1-203ENST00000393118 TTC21AQ8NDW8 1320 aa12.78□□□□□ -0.36
CALD1-203ENST00000393118 NRXN1Q9ULB1 1477 aa12.78□□□□□ -0.36
CALD1-203ENST00000393118 ADGRB1O14514 1584 aa12.78□□□□□ -0.36
CALD1-203ENST00000393118 FLT4P35916 1363 aa12.78□□□□□ -0.36
CALD1-203ENST00000393118 DEPDC5O75140 1603 aa12.77□□□□□ -0.36
CALD1-203ENST00000393118 MSH6P52701 1360 aa12.77□□□□□ -0.36
CALD1-203ENST00000393118 ATF3P18847 181 aa12.77□□□□□ -0.36
CALD1-203ENST00000393118 MRE11P49959 708 aa12.77□□□□□ -0.36
CALD1-203ENST00000393118 LRRC59Q96AG4 307 aaKnown RBP12.77□□□□□ -0.36
CALD1-203ENST00000393118 GOLGA6L4A6NEF3 574 aa12.77□□□□□ -0.37
CALD1-203ENST00000393118 MROH1Q8NDA8 1641 aa12.77□□□□□ -0.37
CALD1-203ENST00000393118 PDCL3Q9H2J4 239 aa12.76□□□□□ -0.37
CALD1-203ENST00000393118 DIP2CQ9Y2E4 1556 aa12.76□□□□□ -0.37
CALD1-203ENST00000393118 NEXMIFQ5QGS0 1516 aa12.76□□□□□ -0.37
CALD1-203ENST00000393118 CAMSAP1Q5T5Y3 1602 aa12.76□□□□□ -0.37
CALD1-203ENST00000393118 PI4KAP2A4QPH2 592 aa12.76□□□□□ -0.37
CALD1-203ENST00000393118 PI4KAP1Q8N8J0 262 aa12.76□□□□□ -0.37
CALD1-203ENST00000393118 CIZ1Q9ULV3 898 aaPredicted RBP12.76□□□□□ -0.37
CALD1-203ENST00000393118 A2ML1A8K2U0 1454 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms