RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 RGS3P49796 1198 aa27.48■■□□□ 1.99
TRIM54-202ENST00000380075 BRPF1P55201 1214 aaPredicted RBP27.48■■□□□ 1.99
TRIM54-202ENST00000380075 ATF7IPQ6VMQ6 1270 aa27.48■■□□□ 1.99
TRIM54-202ENST00000380075 RWDD1Q9H446 243 aaPredicted RBP27.48■■□□□ 1.99
TRIM54-202ENST00000380075 LRP6O75581 1613 aa27.47■■□□□ 1.99
TRIM54-202ENST00000380075 TNNQ9UQP3 1299 aa27.47■■□□□ 1.99
TRIM54-202ENST00000380075 RRS1Q15050 365 aaKnown RBP27.46■■□□□ 1.99
TRIM54-202ENST00000380075 PHACTR3Q96KR7 559 aa27.46■■□□□ 1.99
TRIM54-202ENST00000380075 IFT57Q9NWB7 429 aa27.46■■□□□ 1.99
TRIM54-202ENST00000380075 GNAI1P63096 354 aa27.46■■□□□ 1.99
TRIM54-202ENST00000380075 MARF1Q9Y4F3 1742 aaKnown RBP27.45■■□□□ 1.99
TRIM54-202ENST00000380075 ZC3H6P61129 1189 aaKnown RBP27.45■■□□□ 1.98
TRIM54-202ENST00000380075 DDX19BQ9UMR2 479 aa27.45■■□□□ 1.98
TRIM54-202ENST00000380075 PCDHB15Q9Y5E8 787 aa27.45■■□□□ 1.98
TRIM54-202ENST00000380075 TRIM27P14373 513 aa27.44■■□□□ 1.98
TRIM54-202ENST00000380075 CRYBG1Q9Y4K1 1723 aa27.44■■□□□ 1.98
TRIM54-202ENST00000380075 SLIT3O75094 1523 aa27.44■■□□□ 1.98
TRIM54-202ENST00000380075 KCNH5Q8NCM2 988 aa27.44■■□□□ 1.98
TRIM54-202ENST00000380075 PHRF1Q9P1Y6 1649 aaKnown RBP27.42■■□□□ 1.98
TRIM54-202ENST00000380075 ABCA3Q99758 1704 aa27.42■■□□□ 1.98
TRIM54-202ENST00000380075 USP54Q70EL1 1684 aa27.41■■□□□ 1.98
TRIM54-202ENST00000380075 ZNF853P0CG23 659 aa27.4■■□□□ 1.98
TRIM54-202ENST00000380075 MEX3CQ5U5Q3 659 aaKnown RBP27.4■■□□□ 1.98
TRIM54-202ENST00000380075 NOB1Q9ULX3 412 aaKnown RBP27.4■■□□□ 1.98
TRIM54-202ENST00000380075 KIAA0232Q92628 1395 aa27.4■■□□□ 1.98
TRIM54-202ENST00000380075 FAM83GA6ND36 823 aa27.39■■□□□ 1.97
TRIM54-202ENST00000380075 C8orf37Q96NL8 207 aa27.39■■□□□ 1.97
TRIM54-202ENST00000380075 ZBTB7CA1YPR0 619 aa27.38■■□□□ 1.97
TRIM54-202ENST00000380075 EIF4A2Q14240 407 aaKnown RBP27.37■■□□□ 1.97
TRIM54-202ENST00000380075 CHRNA2Q15822 529 aa27.37■■□□□ 1.97
TRIM54-202ENST00000380075 PRDM11Q9NQV5 511 aa27.37■■□□□ 1.97
TRIM54-202ENST00000380075 VIRMAQ69YN4 1812 aaKnown RBP27.37■■□□□ 1.97
TRIM54-202ENST00000380075 NFAT5O94916 1531 aa27.37■■□□□ 1.97
TRIM54-202ENST00000380075 ARHGEF25Q86VW2 580 aa27.37■■□□□ 1.97
TRIM54-202ENST00000380075 CFAP44Q96MT7 982 aa27.37■■□□□ 1.97
TRIM54-202ENST00000380075 HDAC1Q13547 482 aaPredicted RBP27.35■■□□□ 1.97
TRIM54-202ENST00000380075 ITPRIPQ8IWB1 547 aa27.35■■□□□ 1.97
TRIM54-202ENST00000380075 ARHGAP45Q92619 1136 aa27.35■■□□□ 1.97
TRIM54-202ENST00000380075 CPDO75976 1380 aa27.35■■□□□ 1.97
TRIM54-202ENST00000380075 NGLY1Q96IV0 654 aa27.35■■□□□ 1.97
TRIM54-202ENST00000380075 LAS1LQ9Y4W2 734 aaKnown RBP27.35■■□□□ 1.97
TRIM54-202ENST00000380075 CHMP4BQ9H444 224 aaKnown RBP27.34■■□□□ 1.97
TRIM54-202ENST00000380075 DLG5Q8TDM6 1919 aa27.34■■□□□ 1.97
TRIM54-202ENST00000380075 VAMP4O75379 141 aa27.33■■□□□ 1.97
TRIM54-202ENST00000380075 RGPD1P0DJD0 1748 aa27.33■■□□□ 1.97
TRIM54-202ENST00000380075 PEAK1Q9H792 1746 aa27.32■■□□□ 1.96
TRIM54-202ENST00000380075 MAP3K19Q56UN5 1328 aa27.31■■□□□ 1.96
TRIM54-202ENST00000380075 MBIPQ9NS73 344 aa27.31■■□□□ 1.96
TRIM54-202ENST00000380075 PDZRN3Q9UPQ7 1066 aa27.31■■□□□ 1.96
TRIM54-202ENST00000380075 TMEM57Q8N5G2 664 aa27.31■■□□□ 1.96
TRIM54-202ENST00000380075 THUMPD2Q9BTF0 503 aaKnown RBP27.31■■□□□ 1.96
TRIM54-202ENST00000380075 SULT6B1Q6IMI4 303 aa27.29■■□□□ 1.96
TRIM54-202ENST00000380075 ZBTB40Q9NUA8 1239 aa27.29■■□□□ 1.96
TRIM54-202ENST00000380075 MRPL50Q8N5N7 158 aaKnown RBP27.29■■□□□ 1.96
TRIM54-202ENST00000380075 AXIN2Q9Y2T1 843 aa27.29■■□□□ 1.96
TRIM54-202ENST00000380075 FLT4P35916 1363 aa27.28■■□□□ 1.96
TRIM54-202ENST00000380075 FNBP4Q8N3X1 1017 aaPredicted RBP27.28■■□□□ 1.96
TRIM54-202ENST00000380075 BTG4Q9NY30 223 aa27.28■■□□□ 1.96
TRIM54-202ENST00000380075 AFF2P51816 1311 aa27.26■■□□□ 1.96
TRIM54-202ENST00000380075 AMPHP49418 695 aa27.26■■□□□ 1.95
TRIM54-202ENST00000380075 TWISTNBQ3B726 338 aaPredicted RBP27.26■■□□□ 1.95
TRIM54-202ENST00000380075 KIF24Q5T7B8 1368 aa27.26■■□□□ 1.95
TRIM54-202ENST00000380075 HSP90AB2PQ58FF8 381 aa27.25■■□□□ 1.95
TRIM54-202ENST00000380075 AEBP1Q8IUX7 1158 aa27.24■■□□□ 1.95
TRIM54-202ENST00000380075 SLIT2O94813 1529 aa27.24■■□□□ 1.95
TRIM54-202ENST00000380075 TSPYL6Q8N831 410 aa27.23■■□□□ 1.95
TRIM54-202ENST00000380075 IP6K1Q92551 441 aa27.23■■□□□ 1.95
TRIM54-202ENST00000380075 USP21Q9UK80 565 aa27.23■■□□□ 1.95
TRIM54-202ENST00000380075 COL14A1Q05707 1796 aaKnown RBP27.23■■□□□ 1.95
TRIM54-202ENST00000380075 CAMTA1Q9Y6Y1 1673 aa27.22■■□□□ 1.95
TRIM54-202ENST00000380075 HOXC9P31274 260 aa27.22■■□□□ 1.95
TRIM54-202ENST00000380075 SMC5Q8IY18 1101 aa27.22■■□□□ 1.95
TRIM54-202ENST00000380075 BCL9LQ86UU0 1499 aa27.22■■□□□ 1.95
TRIM54-202ENST00000380075 LTN1O94822 1766 aa27.21■■□□□ 1.95
TRIM54-202ENST00000380075 API5Q9BZZ5 524 aaKnown RBP27.2■■□□□ 1.95
TRIM54-202ENST00000380075 KDRP35968 1356 aa27.2■■□□□ 1.95
TRIM54-202ENST00000380075 UNC5CLQ8IV45 518 aa27.2■■□□□ 1.94
TRIM54-202ENST00000380075 STRN4Q9NRL3 753 aa27.2■■□□□ 1.94
TRIM54-202ENST00000380075 DAXXQ9UER7 740 aaPredicted RBP27.2■■□□□ 1.94
TRIM54-202ENST00000380075 RGS17Q9UGC6 210 aaPredicted RBP27.2■■□□□ 1.94
TRIM54-202ENST00000380075 COL18A1P39060 1754 aa27.2■■□□□ 1.94
TRIM54-202ENST00000380075 ABCC4O15439 1325 aa27.2■■□□□ 1.94
TRIM54-202ENST00000380075 LMO7Q8WWI1 1683 aa27.19■■□□□ 1.94
TRIM54-202ENST00000380075 C8orf58Q8NAV2 365 aa27.18■■□□□ 1.94
TRIM54-202ENST00000380075 PLCH1Q4KWH8 1693 aa27.18■■□□□ 1.94
TRIM54-202ENST00000380075 CHL1O00533 1208 aa27.18■■□□□ 1.94
TRIM54-202ENST00000380075 EVA1CP58658 441 aa27.18■■□□□ 1.94
TRIM54-202ENST00000380075 RTL1A6NKG5 1358 aa27.17■■□□□ 1.94
TRIM54-202ENST00000380075 IGSF1Q8N6C5 1336 aa27.16■■□□□ 1.94
TRIM54-202ENST00000380075 DCTN1Q14203 1278 aa27.16■■□□□ 1.94
TRIM54-202ENST00000380075 LTV1Q96GA3 475 aaPredicted RBP27.16■■□□□ 1.94
TRIM54-202ENST00000380075 COL5A2P05997 1499 aaPredicted RBP27.15■■□□□ 1.94
TRIM54-202ENST00000380075 ZBTB7BO15156 539 aaPredicted RBP27.15■■□□□ 1.94
TRIM54-202ENST00000380075 ZNF772Q68DY9 489 aaPredicted RBP27.15■■□□□ 1.94
TRIM54-202ENST00000380075 ANKRD24Q8TF21 1146 aa27.15■■□□□ 1.94
TRIM54-202ENST00000380075 LARP1Q6PKG0 1096 aaKnown RBP27.14■■□□□ 1.94
TRIM54-202ENST00000380075 UPF2Q9HAU5 1272 aaKnown RBP27.14■■□□□ 1.94
TRIM54-202ENST00000380075 ABCC6O95255 1503 aa27.14■■□□□ 1.93
TRIM54-202ENST00000380075 NBR1Q14596 966 aa27.13■■□□□ 1.93
TRIM54-202ENST00000380075 ERBB3P21860 1342 aa27.13■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms