RNA–Protein interactions for RNA: ENST00000377861.4

PCDH9-201, Transcript of protocadherin 9, humanhuman

TSL 1 (best) BASIC

Gene PCDH9, Length 28,227 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-201ENST00000377861 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP5.83□□□□□ -1.48
PCDH9-201ENST00000377861 GNL2Q13823 731 aaKnown RBP5.83□□□□□ -1.48
PCDH9-201ENST00000377861 GNL3LQ9NVN8 582 aaKnown RBP5.83□□□□□ -1.48
PCDH9-201ENST00000377861 TWISTNBQ3B726 338 aaPredicted RBP5.83□□□□□ -1.48
PCDH9-201ENST00000377861 SCAF11Q99590 1463 aaKnown RBP5.83□□□□□ -1.48
PCDH9-201ENST00000377861 WDR7Q9Y4E6 1490 aa5.83□□□□□ -1.48
PCDH9-201ENST00000377861 NEK4P51957 841 aa5.83□□□□□ -1.48
PCDH9-201ENST00000377861 GORABQ5T7V8 394 aa5.83□□□□□ -1.48
PCDH9-201ENST00000377861 DBF4Q9UBU7 674 aaPredicted RBP5.83□□□□□ -1.48
PCDH9-201ENST00000377861 MCTP2Q6DN12 878 aa5.83□□□□□ -1.48
PCDH9-201ENST00000377861 WIZO95785 1651 aa5.83□□□□□ -1.48
PCDH9-201ENST00000377861 BMP2KQ9NSY1 1161 aaPredicted RBP5.83□□□□□ -1.48
PCDH9-201ENST00000377861 KIAA0232Q92628 1395 aa5.82□□□□□ -1.48
PCDH9-201ENST00000377861 RPAINQ86UA6 219 aa5.82□□□□□ -1.48
PCDH9-201ENST00000377861 ZNF500O60304 480 aaPredicted RBP5.82□□□□□ -1.48
PCDH9-201ENST00000377861 SPATS2Q86XZ4 545 aaKnown RBP5.82□□□□□ -1.48
PCDH9-201ENST00000377861 FILIP1Q7Z7B0 1213 aa5.82□□□□□ -1.48
PCDH9-201ENST00000377861 TACO1Q9BSH4 297 aaKnown RBP5.82□□□□□ -1.48
PCDH9-201ENST00000377861 RUSC2Q8N2Y8 1516 aa5.82□□□□□ -1.48
PCDH9-201ENST00000377861 HOOK3Q86VS8 718 aa5.82□□□□□ -1.48
PCDH9-201ENST00000377861 PPP2R5EQ16537 467 aa5.82□□□□□ -1.48
PCDH9-201ENST00000377861 RASSF4Q9H2L5 321 aa5.82□□□□□ -1.48
PCDH9-201ENST00000377861 TTC41PQ6P2S7 1318 aa5.82□□□□□ -1.48
PCDH9-201ENST00000377861 KCNG4Q8TDN1 519 aa5.82□□□□□ -1.48
PCDH9-201ENST00000377861 PCP11498 1178 aaKnown RBP5.82□□□□□ -1.48
PCDH9-201ENST00000377861 CCDC183Q5T5S1 534 aa5.82□□□□□ -1.48
PCDH9-201ENST00000377861 DEF6Q9H4E7 631 aa5.82□□□□□ -1.48
PCDH9-201ENST00000377861 ATG3Q9NT62 314 aa5.82□□□□□ -1.48
PCDH9-201ENST00000377861 IMMTQ16891 758 aaKnown RBP5.82□□□□□ -1.48
PCDH9-201ENST00000377861 LARP1Q6PKG0 1096 aaKnown RBP5.82□□□□□ -1.48
PCDH9-201ENST00000377861 EVI5LQ96CN4 794 aa5.82□□□□□ -1.48
PCDH9-201ENST00000377861 STIM1Q13586 685 aa5.82□□□□□ -1.48
PCDH9-201ENST00000377861 CCDC171Q6TFL3 1326 aa5.81□□□□□ -1.48
PCDH9-201ENST00000377861 SH3BGRP55822 239 aaPredicted RBP5.81□□□□□ -1.48
PCDH9-201ENST00000377861 PLCD3Q8N3E9 789 aa5.81□□□□□ -1.48
PCDH9-201ENST00000377861 ADGRL2O95490 1459 aa5.81□□□□□ -1.48
PCDH9-201ENST00000377861 MX1P20591 662 aa5.81□□□□□ -1.48
PCDH9-201ENST00000377861 PIP4K2BP78356 416 aa5.81□□□□□ -1.48
PCDH9-201ENST00000377861 NPHP3Q7Z494 1330 aa5.81□□□□□ -1.48
PCDH9-201ENST00000377861 SPAG1Q07617 926 aa5.81□□□□□ -1.48
PCDH9-201ENST00000377861 NGDNQ8NEJ9 315 aaKnown RBP5.81□□□□□ -1.48
PCDH9-201ENST00000377861 C10orf67Q8IYJ2 551 aa5.81□□□□□ -1.48
PCDH9-201ENST00000377861 PPIP5K1Q6PFW1 1433 aa5.81□□□□□ -1.48
PCDH9-201ENST00000377861 MPNDQ8N594 471 aa5.81□□□□□ -1.48
PCDH9-201ENST00000377861 TTF1Q15361 905 aaPredicted RBP5.81□□□□□ -1.48
PCDH9-201ENST00000377861 PPP1R9BQ96SB3 815 aa5.81□□□□□ -1.48
PCDH9-201ENST00000377861 ERICH2A1L162 156 aa5.81□□□□□ -1.48
PCDH9-201ENST00000377861 CCDC172P0C7W6 258 aa5.81□□□□□ -1.48
PCDH9-201ENST00000377861 CEP57L1Q8IYX8 460 aa5.81□□□□□ -1.48
PCDH9-201ENST00000377861 PLCH2O75038 1416 aa5.81□□□□□ -1.48
PCDH9-201ENST00000377861 IVLP07476 585 aa5.81□□□□□ -1.48
PCDH9-201ENST00000377861 TOPBP1Q92547 1522 aa5.8□□□□□ -1.48
PCDH9-201ENST00000377861 SLC4A2P04920 1241 aa5.8□□□□□ -1.48
PCDH9-201ENST00000377861 TXLNAP40222 546 aa5.8□□□□□ -1.48
PCDH9-201ENST00000377861 TRIM22Q8IYM9 498 aa5.8□□□□□ -1.48
PCDH9-201ENST00000377861 HMGB3O15347 200 aaKnown RBP5.8□□□□□ -1.48
PCDH9-201ENST00000377861 CEP128Q6ZU80 1094 aa5.8□□□□□ -1.48
PCDH9-201ENST00000377861 MICALCLQ6ZW33 695 aa5.8□□□□□ -1.48
PCDH9-201ENST00000377861 GLT8D2Q9H1C3 349 aa5.8□□□□□ -1.48
PCDH9-201ENST00000377861 HSP90AB3PQ58FF7 597 aa5.8□□□□□ -1.48
PCDH9-201ENST00000377861 HSP90AB2PQ58FF8 381 aa5.8□□□□□ -1.48
PCDH9-201ENST00000377861 CC2D2AQ9P2K1 1620 aa5.8□□□□□ -1.48
PCDH9-201ENST00000377861 KDM2BQ8NHM5 1336 aa5.8□□□□□ -1.48
PCDH9-201ENST00000377861 CASTP20810 708 aaKnown RBP5.8□□□□□ -1.48
PCDH9-201ENST00000377861 PDZRN3Q9UPQ7 1066 aa5.8□□□□□ -1.48
PCDH9-201ENST00000377861 MAP3K11Q16584 847 aa5.8□□□□□ -1.48
PCDH9-201ENST00000377861 TBC1D2BQ9UPU7 963 aa5.8□□□□□ -1.48
PCDH9-201ENST00000377861 AMPD3Q01432 767 aa5.8□□□□□ -1.48
PCDH9-201ENST00000377861 MRC2Q9UBG0 1479 aa5.8□□□□□ -1.48
PCDH9-201ENST00000377861 GOLGA6L10A0A0M3HER8 536 aa5.8□□□□□ -1.48
PCDH9-201ENST00000377861 NDC80O14777 642 aa5.8□□□□□ -1.48
PCDH9-201ENST00000377861 SPG7Q9UQ90 795 aa5.8□□□□□ -1.48
PCDH9-201ENST00000377861 VPS53Q5VIR6 699 aa5.8□□□□□ -1.48
PCDH9-201ENST00000377861 UBXN4Q92575 508 aa5.8□□□□□ -1.48
PCDH9-201ENST00000377861 GNAT3A8MTJ3 354 aa5.8□□□□□ -1.48
PCDH9-201ENST00000377861 WASHC4Q2M389 1173 aa5.8□□□□□ -1.48
PCDH9-201ENST00000377861 DNMBPQ6XZF7 1577 aa5.8□□□□□ -1.48
PCDH9-201ENST00000377861 LRSAM1Q6UWE0 723 aa5.8□□□□□ -1.48
PCDH9-201ENST00000377861 CCDC50Q8IVM0 306 aa5.8□□□□□ -1.48
PCDH9-201ENST00000377861 NOB1Q9ULX3 412 aaKnown RBP5.8□□□□□ -1.48
PCDH9-201ENST00000377861 ASXL2Q76L83 1435 aa5.8□□□□□ -1.48
PCDH9-201ENST00000377861 LARP1BQ659C4 914 aaKnown RBP5.79□□□□□ -1.48
PCDH9-201ENST00000377861 HOMER1Q86YM7 354 aa5.79□□□□□ -1.48
PCDH9-201ENST00000377861 EIF4G1Q04637 1599 aaKnown RBP5.79□□□□□ -1.48
PCDH9-201ENST00000377861 TRAK1Q9UPV9 953 aa5.79□□□□□ -1.48
PCDH9-201ENST00000377861 TRIM6-TRIM34B2RNG4 842 aa5.79□□□□□ -1.48
PCDH9-201ENST00000377861 RBM6P78332 1123 aaKnown RBP5.79□□□□□ -1.48
PCDH9-201ENST00000377861 RAB3GAP1Q15042 981 aa5.79□□□□□ -1.48
PCDH9-201ENST00000377861 SMYD5Q6GMV2 418 aa5.79□□□□□ -1.48
PCDH9-201ENST00000377861 RNF41Q9H4P4 317 aaPredicted RBP5.79□□□□□ -1.48
PCDH9-201ENST00000377861 GOLGA6L7A0A1B0GV03 622 aa5.79□□□□□ -1.48
PCDH9-201ENST00000377861 CCDC158Q5M9N0 1113 aa5.79□□□□□ -1.48
PCDH9-201ENST00000377861 ZFYVE9O95405 1425 aa5.79□□□□□ -1.48
PCDH9-201ENST00000377861 STARD3NLO95772 234 aa5.79□□□□□ -1.48
PCDH9-201ENST00000377861 GNAT2P19087 354 aa5.79□□□□□ -1.48
PCDH9-201ENST00000377861 CNNM2Q9H8M5 875 aa5.79□□□□□ -1.48
PCDH9-201ENST00000377861 PPFIA3O75145 1194 aa5.79□□□□□ -1.48
PCDH9-201ENST00000377861 DNAI2Q9GZS0 605 aa5.79□□□□□ -1.48
PCDH9-201ENST00000377861 YEATS2Q9ULM3 1422 aa5.79□□□□□ -1.48
PCDH9-201ENST00000377861 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP5.79□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms