RNA–Protein interactions for RNA: ENST00000376854.5

C9orf40-201, Transcript of chromosome 9 open reading frame 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene C9orf40, Length 2,327 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40-201ENST00000376854 AMOTL2Q9Y2J4 779 aa31.46■■■□□ 2.63
C9orf40-201ENST00000376854 GSPT1P15170 499 aaKnown RBP31.46■■■□□ 2.63
C9orf40-201ENST00000376854 ARXQ96QS3 562 aa31.46■■■□□ 2.63
C9orf40-201ENST00000376854 ANO8Q9HCE9 1232 aaPredicted RBP31.46■■■□□ 2.63
C9orf40-201ENST00000376854 EID1Q9Y6B2 187 aa31.46■■■□□ 2.63
C9orf40-201ENST00000376854 HSP90AB2PQ58FF8 381 aa31.44■■■□□ 2.62
C9orf40-201ENST00000376854 CD2BP2O95400 341 aaKnown RBP31.43■■■□□ 2.62
C9orf40-201ENST00000376854 RGS12O14924 1447 aa31.43■■■□□ 2.62
C9orf40-201ENST00000376854 ANKRD44Q8N8A2 993 aa31.43■■■□□ 2.62
C9orf40-201ENST00000376854 TNPO1Q92973 898 aaKnown RBP31.43■■■□□ 2.62
C9orf40-201ENST00000376854 XRCC6P12956 609 aaKnown RBP eCLIP31.42■■■□□ 2.62
C9orf40-201ENST00000376854 PEAK1Q9H792 1746 aa31.42■■■□□ 2.62
C9orf40-201ENST00000376854 KIAA0232Q92628 1395 aa31.42■■■□□ 2.62
C9orf40-201ENST00000376854 HSP90AA1P07900 732 aaKnown RBP31.42■■■□□ 2.62
C9orf40-201ENST00000376854 K7ELQ4 463 aaPredicted RBP31.41■■■□□ 2.62
C9orf40-201ENST00000376854 RBM42Q9BTD8 480 aaKnown RBP31.41■■■□□ 2.62
C9orf40-201ENST00000376854 ATP10DQ9P241 1426 aa31.4■■■□□ 2.62
C9orf40-201ENST00000376854 RAB3GAP1Q15042 981 aa31.4■■■□□ 2.62
C9orf40-201ENST00000376854 TTC22Q5TAA0 569 aa31.4■■■□□ 2.62
C9orf40-201ENST00000376854 RPAP2Q8IXW5 612 aaPredicted RBP31.4■■■□□ 2.62
C9orf40-201ENST00000376854 SSH2Q76I76 1423 aa31.38■■■□□ 2.61
C9orf40-201ENST00000376854 PTPRCP08575 1304 aa31.38■■■□□ 2.61
C9orf40-201ENST00000376854 EIF5BO60841 1220 aaKnown RBP31.38■■■□□ 2.61
C9orf40-201ENST00000376854 CEP85Q6P2H3 762 aa31.38■■■□□ 2.61
C9orf40-201ENST00000376854 C16orf71Q8IYS4 520 aaPredicted RBP31.38■■■□□ 2.61
C9orf40-201ENST00000376854 GBP4Q96PP9 640 aa31.37■■■□□ 2.61
C9orf40-201ENST00000376854 FOXD4L1Q9NU39 408 aa31.37■■■□□ 2.61
C9orf40-201ENST00000376854 ARHGAP23Q9P227 1491 aa31.37■■■□□ 2.61
C9orf40-201ENST00000376854 SLIT1O75093 1534 aa31.37■■■□□ 2.61
C9orf40-201ENST00000376854 MSH6P52701 1360 aa31.36■■■□□ 2.61
C9orf40-201ENST00000376854 NALCNQ8IZF0 1738 aa31.36■■■□□ 2.61
C9orf40-201ENST00000376854 USP31Q70CQ4 1352 aa31.36■■■□□ 2.61
C9orf40-201ENST00000376854 TBX22Q9Y458 520 aa31.35■■■□□ 2.61
C9orf40-201ENST00000376854 RTL1A6NKG5 1358 aa31.34■■■□□ 2.61
C9orf40-201ENST00000376854 CRB1P82279 1406 aa31.34■■■□□ 2.61
C9orf40-201ENST00000376854 MEIS3Q99687 375 aa31.32■■■□□ 2.6
C9orf40-201ENST00000376854 MAP3K19Q56UN5 1328 aa31.32■■■□□ 2.6
C9orf40-201ENST00000376854 SLC4A2P04920 1241 aa31.32■■■□□ 2.6
C9orf40-201ENST00000376854 OTUD7AQ8TE49 926 aaPredicted RBP31.31■■■□□ 2.6
C9orf40-201ENST00000376854 RGPD1P0DJD0 1748 aa31.31■■■□□ 2.6
C9orf40-201ENST00000376854 PANK2Q9BZ23 570 aa31.31■■■□□ 2.6
C9orf40-201ENST00000376854 GAS2L2Q8NHY3 880 aa31.3■■■□□ 2.6
C9orf40-201ENST00000376854 MRE11P49959 708 aa31.3■■■□□ 2.6
C9orf40-201ENST00000376854 MIS18AQ9NYP9 233 aa31.3■■■□□ 2.6
C9orf40-201ENST00000376854 RGPD8O14715 1765 aaPredicted RBP31.3■■■□□ 2.6
C9orf40-201ENST00000376854 ARHGEF10O15013 1369 aa31.29■■■□□ 2.6
C9orf40-201ENST00000376854 DIP2AQ14689 1571 aa31.29■■■□□ 2.6
C9orf40-201ENST00000376854 NGDNQ8NEJ9 315 aaKnown RBP31.29■■■□□ 2.6
C9orf40-201ENST00000376854 ZBTB4Q9P1Z0 1013 aaPredicted RBP31.29■■■□□ 2.6
C9orf40-201ENST00000376854 APBB1O00213 710 aa31.28■■■□□ 2.6
C9orf40-201ENST00000376854 RABEP1Q15276 862 aa31.28■■■□□ 2.6
C9orf40-201ENST00000376854 FER1L4A9Z1Z3 1794 aa31.28■■■□□ 2.6
C9orf40-201ENST00000376854 SMARCA5O60264 1052 aaPredicted RBP31.27■■■□□ 2.6
C9orf40-201ENST00000376854 FOXO3O43524 673 aa31.27■■■□□ 2.6
C9orf40-201ENST00000376854 RTF1Q92541 710 aaKnown RBP31.27■■■□□ 2.6
C9orf40-201ENST00000376854 MTHFSDQ2M296 383 aaKnown RBP31.26■■■□□ 2.6
C9orf40-201ENST00000376854 THEMISQ8N1K5 641 aaPredicted RBP31.26■■■□□ 2.6
C9orf40-201ENST00000376854 USP26Q9BXU7 913 aa31.26■■■□□ 2.6
C9orf40-201ENST00000376854 TTC21AQ8NDW8 1320 aa31.26■■■□□ 2.59
C9orf40-201ENST00000376854 SDSP20132 328 aa31.26■■■□□ 2.59
C9orf40-201ENST00000376854 PTMSP20962 102 aa31.26■■■□□ 2.59
C9orf40-201ENST00000376854 TSPYL4Q9UJ04 414 aa31.25■■■□□ 2.59
C9orf40-201ENST00000376854 SKOR2Q2VWA4 1001 aaPredicted RBP31.25■■■□□ 2.59
C9orf40-201ENST00000376854 RRAGDQ9NQL2 400 aaPredicted RBP31.25■■■□□ 2.59
C9orf40-201ENST00000376854 ISY1Q9ULR0 285 aaKnown RBP31.25■■■□□ 2.59
C9orf40-201ENST00000376854 CASC1Q6TDU7 716 aa31.24■■■□□ 2.59
C9orf40-201ENST00000376854 GRPEL1Q9HAV7 217 aa31.24■■■□□ 2.59
C9orf40-201ENST00000376854 RIMS1Q86UR5 1692 aaKnown RBP31.23■■■□□ 2.59
C9orf40-201ENST00000376854 SSFA2P28290 1259 aa31.23■■■□□ 2.59
C9orf40-201ENST00000376854 HMMRO75330 724 aa31.22■■■□□ 2.59
C9orf40-201ENST00000376854 FLT4P35916 1363 aa31.22■■■□□ 2.59
C9orf40-201ENST00000376854 SLC4A10Q6U841 1118 aa31.21■■■□□ 2.59
C9orf40-201ENST00000376854 G2E3Q7L622 706 aa31.21■■■□□ 2.59
C9orf40-201ENST00000376854 SBNO1A3KN83 1393 aa31.21■■■□□ 2.59
C9orf40-201ENST00000376854 KCNA6P17658 529 aa31.21■■■□□ 2.59
C9orf40-201ENST00000376854 F6X3S4 739 aa31.2■■■□□ 2.58
C9orf40-201ENST00000376854 CCT4P50991 539 aaKnown RBP31.2■■■□□ 2.58
C9orf40-201ENST00000376854 FMN2Q9NZ56 1722 aa31.19■■■□□ 2.58
C9orf40-201ENST00000376854 NUTM2GQ5VZR2 741 aa31.19■■■□□ 2.58
C9orf40-201ENST00000376854 PIK3C2AO00443 1686 aa31.19■■■□□ 2.58
C9orf40-201ENST00000376854 KDRP35968 1356 aa31.18■■■□□ 2.58
C9orf40-201ENST00000376854 XRN1Q8IZH2 1706 aaKnown RBP31.18■■■□□ 2.58
C9orf40-201ENST00000376854 AMPHP49418 695 aa31.18■■■□□ 2.58
C9orf40-201ENST00000376854 EYA1Q99502 592 aa31.18■■■□□ 2.58
C9orf40-201ENST00000376854 CLEC17AQ6ZS10 378 aa31.17■■■□□ 2.58
C9orf40-201ENST00000376854 CEP170BQ9Y4F5 1589 aaPredicted RBP31.16■■■□□ 2.58
C9orf40-201ENST00000376854 GOLGA6L22H0YM25 854 aa31.15■■■□□ 2.58
C9orf40-201ENST00000376854 IGSF1Q8N6C5 1336 aa31.15■■■□□ 2.58
C9orf40-201ENST00000376854 NLRP6P59044 892 aa31.15■■■□□ 2.58
C9orf40-201ENST00000376854 REC8O95072 547 aa31.14■■■□□ 2.58
C9orf40-201ENST00000376854 STK31Q9BXU1 1019 aa31.13■■■□□ 2.57
C9orf40-201ENST00000376854 GAS2L3Q86XJ1 694 aa31.12■■■□□ 2.57
C9orf40-201ENST00000376854 BAG4O95429 457 aaKnown RBP31.12■■■□□ 2.57
C9orf40-201ENST00000376854 GNAI2P04899 355 aa31.12■■■□□ 2.57
C9orf40-201ENST00000376854 OSBPL3Q9H4L5 887 aa31.12■■■□□ 2.57
C9orf40-201ENST00000376854 PDE1AP54750 535 aa31.1■■■□□ 2.57
C9orf40-201ENST00000376854 ERC2O15083 957 aa31.1■■■□□ 2.57
C9orf40-201ENST00000376854 ST18O60284 1047 aa31.1■■■□□ 2.57
C9orf40-201ENST00000376854 NUCB2P80303 420 aa31.09■■■□□ 2.57
C9orf40-201ENST00000376854 HTATSF1O43719 755 aaKnown RBP31.08■■■□□ 2.57
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms