RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 MYH16Q9H6N6 1097 aa17■□□□□ 0.31
SQSTM1-201ENST00000360718 CALD1Q05682 793 aaKnown RBP16.99■□□□□ 0.31
SQSTM1-201ENST00000360718 TSR2Q969E8 191 aaKnown RBP16.99■□□□□ 0.31
SQSTM1-201ENST00000360718 IL16Q14005 1332 aa16.99■□□□□ 0.31
SQSTM1-201ENST00000360718 TCERG1O14776 1098 aaKnown RBP16.99■□□□□ 0.31
SQSTM1-201ENST00000360718 EXOC6Q8TAG9 804 aa16.99■□□□□ 0.31
SQSTM1-201ENST00000360718 COL5A2P05997 1499 aaPredicted RBP16.98■□□□□ 0.31
SQSTM1-201ENST00000360718 MCM10Q7L590 875 aa16.97■□□□□ 0.31
SQSTM1-201ENST00000360718 NLRP2Q9NX02 1062 aa16.97■□□□□ 0.31
SQSTM1-201ENST00000360718 IPO9Q96P70 1041 aaKnown RBP16.96■□□□□ 0.31
SQSTM1-201ENST00000360718 CSB-PGBD3P0DP91 1061 aa16.95■□□□□ 0.3
SQSTM1-201ENST00000360718 GAS2L2Q8NHY3 880 aa16.95■□□□□ 0.3
SQSTM1-201ENST00000360718 MEGF6O75095 1541 aa16.94■□□□□ 0.3
SQSTM1-201ENST00000360718 WDR17Q8IZU2 1322 aa16.93■□□□□ 0.3
SQSTM1-201ENST00000360718 ZNF853P0CG23 659 aa16.93■□□□□ 0.3
SQSTM1-201ENST00000360718 MS4A1P11836 297 aa16.93■□□□□ 0.3
SQSTM1-201ENST00000360718 LAS1LQ9Y4W2 734 aaKnown RBP16.93■□□□□ 0.3
SQSTM1-201ENST00000360718 ZBTB47Q9UFB7 747 aaPredicted RBP16.93■□□□□ 0.3
SQSTM1-201ENST00000360718 COL14A1Q05707 1796 aaKnown RBP16.92■□□□□ 0.3
SQSTM1-201ENST00000360718 CRB1P82279 1406 aa16.92■□□□□ 0.3
SQSTM1-201ENST00000360718 LRRC37A3O60309 1634 aa16.92■□□□□ 0.3
SQSTM1-201ENST00000360718 EXOSC9Q06265 439 aaKnown RBP16.91■□□□□ 0.3
SQSTM1-201ENST00000360718 LARP1Q6PKG0 1096 aaKnown RBP16.91■□□□□ 0.3
SQSTM1-201ENST00000360718 RTF1Q92541 710 aaKnown RBP16.91■□□□□ 0.3
SQSTM1-201ENST00000360718 STRN4Q9NRL3 753 aa16.91■□□□□ 0.3
SQSTM1-201ENST00000360718 MAP3K5Q99683 1374 aa16.91■□□□□ 0.3
SQSTM1-201ENST00000360718 GNAT3A8MTJ3 354 aa16.91■□□□□ 0.3
SQSTM1-201ENST00000360718 GNAI1P63096 354 aa16.91■□□□□ 0.3
SQSTM1-201ENST00000360718 MBIPQ9NS73 344 aa16.91■□□□□ 0.3
SQSTM1-201ENST00000360718 BTG4Q9NY30 223 aa16.91■□□□□ 0.3
SQSTM1-201ENST00000360718 IL17REQ8NFR9 667 aa16.9■□□□□ 0.3
SQSTM1-201ENST00000360718 IFT57Q9NWB7 429 aa16.9■□□□□ 0.3
SQSTM1-201ENST00000360718 VIRMAQ69YN4 1812 aaKnown RBP16.9■□□□□ 0.3
SQSTM1-201ENST00000360718 PLIN1O60240 522 aa16.9■□□□□ 0.3
SQSTM1-201ENST00000360718 ADAMTS2O95450 1211 aa16.9■□□□□ 0.3
SQSTM1-201ENST00000360718 TOM1L2Q6ZVM7 507 aa16.9■□□□□ 0.3
SQSTM1-201ENST00000360718 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.9■□□□□ 0.3
SQSTM1-201ENST00000360718 CFAP44Q96MT7 982 aa16.9■□□□□ 0.3
SQSTM1-201ENST00000360718 BCAR3O75815 825 aa16.89■□□□□ 0.29
SQSTM1-201ENST00000360718 PLCH1Q4KWH8 1693 aa16.89■□□□□ 0.29
SQSTM1-201ENST00000360718 NUTM2BA6NNL0 878 aaPredicted RBP16.89■□□□□ 0.29
SQSTM1-201ENST00000360718 NUTM2EB1AL46 878 aaPredicted RBP16.89■□□□□ 0.29
SQSTM1-201ENST00000360718 HTATSF1O43719 755 aaKnown RBP16.89■□□□□ 0.29
SQSTM1-201ENST00000360718 CT47B1P0C2W7 299 aaPredicted RBP16.89■□□□□ 0.29
SQSTM1-201ENST00000360718 PLEKHO1Q53GL0 409 aaPredicted RBP16.89■□□□□ 0.29
SQSTM1-201ENST00000360718 ZNF530Q6P9A1 599 aaPredicted RBP16.89■□□□□ 0.29
SQSTM1-201ENST00000360718 NUTM2AQ8IVF1 878 aaPredicted RBP16.89■□□□□ 0.29
SQSTM1-201ENST00000360718 RAPGEF4Q8WZA2 1011 aa16.88■□□□□ 0.29
SQSTM1-201ENST00000360718 AMOTQ4VCS5 1084 aa16.87■□□□□ 0.29
SQSTM1-201ENST00000360718 LGR6Q9HBX8 967 aa16.87■□□□□ 0.29
SQSTM1-201ENST00000360718 MIS18AQ9NYP9 233 aa16.87■□□□□ 0.29
SQSTM1-201ENST00000360718 PKD1L3Q7Z443 1732 aa16.87■□□□□ 0.29
SQSTM1-201ENST00000360718 CHL1O00533 1208 aa16.86■□□□□ 0.29
SQSTM1-201ENST00000360718 EVA1CP58658 441 aa16.86■□□□□ 0.29
SQSTM1-201ENST00000360718 TATP17735 454 aaPredicted RBP16.86■□□□□ 0.29
SQSTM1-201ENST00000360718 RARSP54136 660 aaKnown RBP16.86■□□□□ 0.29
SQSTM1-201ENST00000360718 TSPYL6Q8N831 410 aa16.86■□□□□ 0.29
SQSTM1-201ENST00000360718 CARD10Q9BWT7 1032 aa16.86■□□□□ 0.29
SQSTM1-201ENST00000360718 CEMIPQ8WUJ3 1361 aa16.85■□□□□ 0.29
SQSTM1-201ENST00000360718 PDE4AP27815 886 aa16.85■□□□□ 0.29
SQSTM1-201ENST00000360718 AKAP4Q5JQC9 854 aa16.85■□□□□ 0.29
SQSTM1-201ENST00000360718 NRAPQ86VF7 1730 aa16.85■□□□□ 0.29
SQSTM1-201ENST00000360718 JCADQ9P266 1359 aa16.85■□□□□ 0.29
SQSTM1-201ENST00000360718 MPRIPQ6WCQ1 1025 aa16.85■□□□□ 0.29
SQSTM1-201ENST00000360718 BCL2L13Q9BXK5 485 aa16.85■□□□□ 0.29
SQSTM1-201ENST00000360718 OVOS2A0A0G2JMS6 1433 aa16.84■□□□□ 0.29
SQSTM1-201ENST00000360718 PARP4Q9UKK3 1724 aaKnown RBP16.84■□□□□ 0.29
SQSTM1-201ENST00000360718 HSPA1LP34931 641 aa16.84■□□□□ 0.29
SQSTM1-201ENST00000360718 KRT24Q2M2I5 525 aa16.84■□□□□ 0.29
SQSTM1-201ENST00000360718 USP35Q9P2H5 1018 aa16.84■□□□□ 0.29
SQSTM1-201ENST00000360718 C8orf58Q8NAV2 365 aa16.84■□□□□ 0.29
SQSTM1-201ENST00000360718 CRBNQ96SW2 442 aa16.84■□□□□ 0.29
SQSTM1-201ENST00000360718 ADAMTS7Q9UKP4 1686 aa16.83■□□□□ 0.29
SQSTM1-201ENST00000360718 C20orf194Q5TEA3 1177 aa16.83■□□□□ 0.28
SQSTM1-201ENST00000360718 BACH2Q9BYV9 841 aa16.83■□□□□ 0.28
SQSTM1-201ENST00000360718 SHANK3Q9BYB0 1731 aa16.83■□□□□ 0.28
SQSTM1-201ENST00000360718 ELL2O00472 640 aaPredicted RBP16.82■□□□□ 0.28
SQSTM1-201ENST00000360718 CYP27B1O15528 508 aa16.82■□□□□ 0.28
SQSTM1-201ENST00000360718 C1orf141Q5JVX7 400 aa16.82■□□□□ 0.28
SQSTM1-201ENST00000360718 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.82■□□□□ 0.28
SQSTM1-201ENST00000360718 LRP6O75581 1613 aa16.82■□□□□ 0.28
SQSTM1-201ENST00000360718 KDM6AO15550 1401 aaPredicted RBP16.81■□□□□ 0.28
SQSTM1-201ENST00000360718 PLEKHG2Q9H7P9 1386 aa16.81■□□□□ 0.28
SQSTM1-201ENST00000360718 RNMTO43148 476 aaKnown RBP16.81■□□□□ 0.28
SQSTM1-201ENST00000360718 VAMP4O75379 141 aa16.81■□□□□ 0.28
SQSTM1-201ENST00000360718 PHKG2P15735 406 aa16.81■□□□□ 0.28
SQSTM1-201ENST00000360718 CANXP27824 592 aaKnown RBP16.81■□□□□ 0.28
SQSTM1-201ENST00000360718 SPG7Q9UQ90 795 aa16.81■□□□□ 0.28
SQSTM1-201ENST00000360718 SCN11AQ9UI33 1791 aa16.81■□□□□ 0.28
SQSTM1-201ENST00000360718 SLIT2O94813 1529 aa16.8■□□□□ 0.28
SQSTM1-201ENST00000360718 SSH1Q8WYL5 1049 aa16.8■□□□□ 0.28
SQSTM1-201ENST00000360718 ZNF428Q96B54 188 aa16.8■□□□□ 0.28
SQSTM1-201ENST00000360718 TSPYL4Q9UJ04 414 aa16.8■□□□□ 0.28
SQSTM1-201ENST00000360718 SIPA1L3O60292 1781 aaPredicted RBP16.8■□□□□ 0.28
SQSTM1-201ENST00000360718 IL2RBP14784 551 aa16.8■□□□□ 0.28
SQSTM1-201ENST00000360718 TAF7Q15545 349 aaPredicted RBP16.79■□□□□ 0.28
SQSTM1-201ENST00000360718 NWD2Q9ULI1 1742 aa16.79■□□□□ 0.28
SQSTM1-201ENST00000360718 NBR1Q14596 966 aa16.79■□□□□ 0.28
SQSTM1-201ENST00000360718 TWISTNBQ3B726 338 aaPredicted RBP16.79■□□□□ 0.28
SQSTM1-201ENST00000360718 RTL5Q5HYW3 569 aaPredicted RBP16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms