RNA–Protein interactions for RNA: ENST00000359759.8

COL18A1-203, Transcript of collagen type XVIII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL18A1, Length 6,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-203ENST00000359759 HDGFL1Q5TGJ6 251 aa18.8■□□□□ 0.6
COL18A1-203ENST00000359759 GPATCH11Q8N954 259 aa18.8■□□□□ 0.6
COL18A1-203ENST00000359759 TDO2P48775 406 aa18.8■□□□□ 0.6
COL18A1-203ENST00000359759 CCDC178Q5BJE1 867 aa18.8■□□□□ 0.6
COL18A1-203ENST00000359759 IL1RAPL2Q9NP60 686 aa18.8■□□□□ 0.6
COL18A1-203ENST00000359759 ZFP91Q96JP5 570 aaPredicted RBP18.8■□□□□ 0.6
COL18A1-203ENST00000359759 RAI14Q9P0K7 980 aa18.8■□□□□ 0.6
COL18A1-203ENST00000359759 MAP3K11Q16584 847 aa18.79■□□□□ 0.6
COL18A1-203ENST00000359759 CCDC91Q7Z6B0 441 aa18.79■□□□□ 0.6
COL18A1-203ENST00000359759 MPHOSPH10O00566 681 aaKnown RBP18.79■□□□□ 0.6
COL18A1-203ENST00000359759 PLEKHO1Q53GL0 409 aaPredicted RBP18.79■□□□□ 0.6
COL18A1-203ENST00000359759 KLHL10Q6JEL2 608 aa18.79■□□□□ 0.6
COL18A1-203ENST00000359759 UBE4AQ14139 1066 aa18.79■□□□□ 0.6
COL18A1-203ENST00000359759 PTPN14Q15678 1187 aa18.79■□□□□ 0.6
COL18A1-203ENST00000359759 ZNF397Q8NF99 534 aaPredicted RBP18.79■□□□□ 0.6
COL18A1-203ENST00000359759 BMP2KQ9NSY1 1161 aaPredicted RBP18.78■□□□□ 0.6
COL18A1-203ENST00000359759 URI1O94763 535 aaPredicted RBP18.78■□□□□ 0.6
COL18A1-203ENST00000359759 NUTM1Q86Y26 1132 aa18.78■□□□□ 0.6
COL18A1-203ENST00000359759 PRDM2Q13029 1718 aa18.78■□□□□ 0.6
COL18A1-203ENST00000359759 FERMT3Q86UX7 667 aa18.78■□□□□ 0.6
COL18A1-203ENST00000359759 UBAC1Q9BSL1 405 aa18.78■□□□□ 0.6
COL18A1-203ENST00000359759 MROH2BQ7Z745 1585 aa18.78■□□□□ 0.6
COL18A1-203ENST00000359759 XPCQ01831 940 aaPredicted RBP18.78■□□□□ 0.6
COL18A1-203ENST00000359759 CCT4P50991 539 aaKnown RBP18.77■□□□□ 0.6
COL18A1-203ENST00000359759 CCDC83Q8IWF9 413 aa18.77■□□□□ 0.6
COL18A1-203ENST00000359759 CCDC85AQ96PX6 553 aaPredicted RBP18.77■□□□□ 0.6
COL18A1-203ENST00000359759 TRMT1Q9NXH9 659 aaKnown RBP18.77■□□□□ 0.59
COL18A1-203ENST00000359759 CDKL5O76039 1030 aa18.77■□□□□ 0.59
COL18A1-203ENST00000359759 ESCO1Q5FWF5 840 aa18.76■□□□□ 0.59
COL18A1-203ENST00000359759 ZSCAN29Q8IWY8 852 aaPredicted RBP18.76■□□□□ 0.59
COL18A1-203ENST00000359759 TNNT1P13805 278 aa18.76■□□□□ 0.59
COL18A1-203ENST00000359759 SPA17Q15506 151 aa18.76■□□□□ 0.59
COL18A1-203ENST00000359759 CABP4P57796 275 aa18.76■□□□□ 0.59
COL18A1-203ENST00000359759 PDE3AQ14432 1141 aa18.76■□□□□ 0.59
COL18A1-203ENST00000359759 IFFO1Q0D2I5 559 aa18.75■□□□□ 0.59
COL18A1-203ENST00000359759 DDX54Q8TDD1 881 aaKnown RBP18.75■□□□□ 0.59
COL18A1-203ENST00000359759 IPO4Q8TEX9 1081 aaKnown RBP18.75■□□□□ 0.59
COL18A1-203ENST00000359759 SULT6B1Q6IMI4 303 aa18.75■□□□□ 0.59
COL18A1-203ENST00000359759 MVPQ14764 893 aaKnown RBP18.75■□□□□ 0.59
COL18A1-203ENST00000359759 CEP63Q96MT8 703 aa18.75■□□□□ 0.59
COL18A1-203ENST00000359759 ZSCAN30Q86W11 494 aa18.74■□□□□ 0.59
COL18A1-203ENST00000359759 MPHOSPH8Q99549 860 aa18.74■□□□□ 0.59
COL18A1-203ENST00000359759 SRGAP3O43295 1099 aa18.74■□□□□ 0.59
COL18A1-203ENST00000359759 CTNNBL1Q8WYA6 563 aaPredicted RBP18.74■□□□□ 0.59
COL18A1-203ENST00000359759 CGNQ9P2M7 1197 aaKnown RBP18.74■□□□□ 0.59
COL18A1-203ENST00000359759 ZNF644Q9H582 1327 aaPredicted RBP18.74■□□□□ 0.59
COL18A1-203ENST00000359759 GUCY1B3Q02153 619 aa18.74■□□□□ 0.59
COL18A1-203ENST00000359759 SRCIN1Q9C0H9 1055 aa18.74■□□□□ 0.59
COL18A1-203ENST00000359759 CADPSQ9ULU8 1353 aa18.74■□□□□ 0.59
COL18A1-203ENST00000359759 ANAPC15P60006 121 aa18.74■□□□□ 0.59
COL18A1-203ENST00000359759 CPLX3Q8WVH0 158 aa18.74■□□□□ 0.59
COL18A1-203ENST00000359759 KIF4BQ2VIQ3 1234 aa18.74■□□□□ 0.59
COL18A1-203ENST00000359759 PPP6R1Q9UPN7 881 aa18.74■□□□□ 0.59
COL18A1-203ENST00000359759 SMG6Q86US8 1419 aaKnown RBP18.74■□□□□ 0.59
COL18A1-203ENST00000359759 KIF5CO60282 957 aa18.73■□□□□ 0.59
COL18A1-203ENST00000359759 DESP17661 470 aa18.73■□□□□ 0.59
COL18A1-203ENST00000359759 ZSCAN31Q96LW9 406 aaPredicted RBP18.73■□□□□ 0.59
COL18A1-203ENST00000359759 SPDYE4A6NLX3 237 aa18.73■□□□□ 0.59
COL18A1-203ENST00000359759 ZSCAN25Q6NSZ9 544 aa18.73■□□□□ 0.59
COL18A1-203ENST00000359759 WIZO95785 1651 aa18.73■□□□□ 0.59
COL18A1-203ENST00000359759 UBA5Q9GZZ9 404 aa18.72■□□□□ 0.59
COL18A1-203ENST00000359759 GTF2F1P35269 517 aaKnown RBP eCLIP18.72■□□□□ 0.593e-7■■■■□ 24.3
COL18A1-203ENST00000359759 CLIP2Q9UDT6 1046 aa18.72■□□□□ 0.59
COL18A1-203ENST00000359759 SFPQP23246 707 aaKnown RBP eCLIP18.72■□□□□ 0.59
COL18A1-203ENST00000359759 LUZP1Q86V48 1076 aa18.72■□□□□ 0.59
COL18A1-203ENST00000359759 SMARCA5O60264 1052 aaPredicted RBP18.72■□□□□ 0.59
COL18A1-203ENST00000359759 CHMP4BP1P59074 171 aa18.72■□□□□ 0.59
COL18A1-203ENST00000359759 ZHX1Q9UKY1 873 aaPredicted RBP18.71■□□□□ 0.59
COL18A1-203ENST00000359759 GBP3Q9H0R5 595 aa18.71■□□□□ 0.59
COL18A1-203ENST00000359759 GSTTP1A0A1W2PQM5 241 aa18.71■□□□□ 0.59
COL18A1-203ENST00000359759 ATF7IPQ6VMQ6 1270 aa18.71■□□□□ 0.59
COL18A1-203ENST00000359759 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP18.71■□□□□ 0.595e-6■■■□□ 16.4
COL18A1-203ENST00000359759 IDH1O75874 414 aaKnown RBP18.71■□□□□ 0.59
COL18A1-203ENST00000359759 CACNA2D4Q7Z3S7 1137 aa18.71■□□□□ 0.58
COL18A1-203ENST00000359759 C11orf95C9JLR9 678 aaPredicted RBP18.7■□□□□ 0.58
COL18A1-203ENST00000359759 SKAP1Q86WV1 359 aa18.7■□□□□ 0.58
COL18A1-203ENST00000359759 SERPINA10Q9UK55 444 aa18.7■□□□□ 0.58
COL18A1-203ENST00000359759 ZSCAN12O43309 604 aa18.7■□□□□ 0.58
COL18A1-203ENST00000359759 C16orf45Q96MC5 204 aaPredicted RBP18.7■□□□□ 0.58
COL18A1-203ENST00000359759 LRP2BPQ9P2M1 347 aa18.7■□□□□ 0.58
COL18A1-203ENST00000359759 CEP131Q9UPN4 1083 aa18.7■□□□□ 0.58
COL18A1-203ENST00000359759 MAP9Q49MG5 647 aa18.7■□□□□ 0.58
COL18A1-203ENST00000359759 LARP6Q9BRS8 491 aaKnown RBP18.7■□□□□ 0.58
COL18A1-203ENST00000359759 MACROD2A1Z1Q3 448 aa18.7■□□□□ 0.58
COL18A1-203ENST00000359759 TOP1P11387 765 aaKnown RBP18.7■□□□□ 0.58
COL18A1-203ENST00000359759 TATP17735 454 aaPredicted RBP18.7■□□□□ 0.58
COL18A1-203ENST00000359759 KIF18AQ8NI77 898 aa18.7■□□□□ 0.58
COL18A1-203ENST00000359759 SRRTQ9BXP5 876 aaKnown RBP18.69■□□□□ 0.58
COL18A1-203ENST00000359759 RUSC2Q8N2Y8 1516 aa18.69■□□□□ 0.58
COL18A1-203ENST00000359759 CFAP70Q5T0N1 1121 aa18.69■□□□□ 0.58
COL18A1-203ENST00000359759 BICDL1Q6ZP65 573 aa18.69■□□□□ 0.58
COL18A1-203ENST00000359759 NUP88Q99567 741 aaPredicted RBP18.69■□□□□ 0.58
COL18A1-203ENST00000359759 GPRASP1Q5JY77 1395 aa18.68■□□□□ 0.58
COL18A1-203ENST00000359759 IMMTQ16891 758 aaKnown RBP18.68■□□□□ 0.58
COL18A1-203ENST00000359759 PPP4R3BQ5MIZ7 849 aa18.68■□□□□ 0.58
COL18A1-203ENST00000359759 POTEJP0CG39 1038 aa18.68■□□□□ 0.58
COL18A1-203ENST00000359759 PRKCSHP14314 528 aaPredicted RBP18.68■□□□□ 0.58
COL18A1-203ENST00000359759 PRPF40BQ6NWY9 871 aaKnown RBP18.68■□□□□ 0.58
COL18A1-203ENST00000359759 CKAP2LQ8IYA6 745 aa18.68■□□□□ 0.58
COL18A1-203ENST00000359759 WASF1Q92558 559 aa18.68■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 288.5 ms