RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 THUMPD2Q9BTF0 503 aaKnown RBP5.38□□□□□ -1.55
LIG4-201ENST00000356922 ONECUT3O60422 494 aaPredicted RBP5.38□□□□□ -1.55
LIG4-201ENST00000356922 TCP11L2Q8N4U5 519 aa5.38□□□□□ -1.55
LIG4-201ENST00000356922 LGR6Q9HBX8 967 aa5.38□□□□□ -1.55
LIG4-201ENST00000356922 DISP2A7MBM2 1401 aa5.37□□□□□ -1.55
LIG4-201ENST00000356922 FCHSD2O94868 740 aa5.37□□□□□ -1.55
LIG4-201ENST00000356922 PIAS4Q8N2W9 510 aaPredicted RBP5.37□□□□□ -1.55
LIG4-201ENST00000356922 MARCH10Q8NA82 808 aaPredicted RBP5.37□□□□□ -1.55
LIG4-201ENST00000356922 DDX54Q8TDD1 881 aaKnown RBP5.37□□□□□ -1.55
LIG4-201ENST00000356922 SPINK5Q9NQ38 1064 aaPredicted RBP5.37□□□□□ -1.55
LIG4-201ENST00000356922 TRPC5Q9UL62 973 aaPredicted RBP5.37□□□□□ -1.55
LIG4-201ENST00000356922 NWD2Q9ULI1 1742 aa5.37□□□□□ -1.55
LIG4-201ENST00000356922 TRIM35Q9UPQ4 493 aa5.37□□□□□ -1.55
LIG4-201ENST00000356922 IL2RBP14784 551 aa5.37□□□□□ -1.55
LIG4-201ENST00000356922 WDR43Q15061 677 aaKnown RBP eCLIP5.37□□□□□ -1.55
LIG4-201ENST00000356922 SEPT12Q8IYM1 358 aa5.37□□□□□ -1.55
LIG4-201ENST00000356922 YTHDC1Q96MU7 727 aaKnown RBP5.37□□□□□ -1.55
LIG4-201ENST00000356922 MPRIPQ6WCQ1 1025 aa5.36□□□□□ -1.55
LIG4-201ENST00000356922 MCM10Q7L590 875 aa5.36□□□□□ -1.55
LIG4-201ENST00000356922 IL17REQ8NFR9 667 aa5.36□□□□□ -1.55
LIG4-201ENST00000356922 NUDCQ9Y266 331 aa5.36□□□□□ -1.55
LIG4-201ENST00000356922 ABCC6O95255 1503 aa5.36□□□□□ -1.55
LIG4-201ENST00000356922 KCNQ2O43526 872 aa5.36□□□□□ -1.55
LIG4-201ENST00000356922 TMPOP42166 694 aaKnown RBP5.36□□□□□ -1.55
LIG4-201ENST00000356922 BARGINQ6ZT62 677 aa5.36□□□□□ -1.55
LIG4-201ENST00000356922 ILDR2Q71H61 639 aa5.36□□□□□ -1.55
LIG4-201ENST00000356922 ZNF772Q68DY9 489 aaPredicted RBP5.35□□□□□ -1.55
LIG4-201ENST00000356922 ZCRB1Q8TBF4 217 aaKnown RBP5.35□□□□□ -1.55
LIG4-201ENST00000356922 RAPGEF4Q8WZA2 1011 aa5.35□□□□□ -1.55
LIG4-201ENST00000356922 MIS18AQ9NYP9 233 aa5.35□□□□□ -1.55
LIG4-201ENST00000356922 OVOS2A0A0G2JMS6 1433 aa5.35□□□□□ -1.55
LIG4-201ENST00000356922 RXRBP28702 533 aa5.35□□□□□ -1.55
LIG4-201ENST00000356922 RBM6P78332 1123 aaKnown RBP5.35□□□□□ -1.55
LIG4-201ENST00000356922 RUNDC1Q96C34 613 aa5.35□□□□□ -1.55
LIG4-201ENST00000356922 CDCA7LQ96GN5 454 aa5.35□□□□□ -1.55
LIG4-201ENST00000356922 SHANK3Q9BYB0 1731 aa5.35□□□□□ -1.55
LIG4-201ENST00000356922 A0A0G2JS52 829 aa5.35□□□□□ -1.55
LIG4-201ENST00000356922 PHKG2P15735 406 aa5.35□□□□□ -1.55
LIG4-201ENST00000356922 RIPK4P57078 832 aa5.35□□□□□ -1.55
LIG4-201ENST00000356922 TNKS1BP1Q9C0C2 1729 aaKnown RBP5.35□□□□□ -1.55
LIG4-201ENST00000356922 RGS12O14924 1447 aa5.34□□□□□ -1.55
LIG4-201ENST00000356922 EXOC5O00471 708 aa5.34□□□□□ -1.55
LIG4-201ENST00000356922 TATP17735 454 aaPredicted RBP5.34□□□□□ -1.55
LIG4-201ENST00000356922 DDB1Q16531 1140 aa5.34□□□□□ -1.55
LIG4-201ENST00000356922 BRWD3Q6RI45 1802 aa5.34□□□□□ -1.55
LIG4-201ENST00000356922 ZNF530Q6P9A1 599 aaPredicted RBP5.34□□□□□ -1.55
LIG4-201ENST00000356922 ACSBG1Q96GR2 724 aa5.34□□□□□ -1.55
LIG4-201ENST00000356922 THRAP3Q9Y2W1 955 aaKnown RBP5.34□□□□□ -1.55
LIG4-201ENST00000356922 KAT6BQ8WYB5 2073 aa5.34□□□□□ -1.55
LIG4-201ENST00000356922 KCNQ3O43525 872 aa5.34□□□□□ -1.55
LIG4-201ENST00000356922 KDM6AO15550 1401 aaPredicted RBP5.34□□□□□ -1.56
LIG4-201ENST00000356922 HNRNPUQ00839 825 aaKnown RBP eCLIP5.33□□□□□ -1.56
LIG4-201ENST00000356922 NFE2L2Q16236 605 aa5.33□□□□□ -1.56
LIG4-201ENST00000356922 WWC1Q8IX03 1113 aa5.33□□□□□ -1.56
LIG4-201ENST00000356922 DLG5Q8TDM6 1919 aa5.33□□□□□ -1.56
LIG4-201ENST00000356922 THSD7AQ9UPZ6 1657 aa5.33□□□□□ -1.56
LIG4-201ENST00000356922 NFATC2IPQ8NCF5 419 aa5.33□□□□□ -1.56
LIG4-201ENST00000356922 LRRC37A3O60309 1634 aa5.33□□□□□ -1.56
LIG4-201ENST00000356922 ZNF521Q96K83 1311 aa5.33□□□□□ -1.56
LIG4-201ENST00000356922 PRIM1P49642 420 aaKnown RBP5.33□□□□□ -1.56
LIG4-201ENST00000356922 KCNQ4P56696 695 aa5.33□□□□□ -1.56
LIG4-201ENST00000356922 KRT24Q2M2I5 525 aa5.33□□□□□ -1.56
LIG4-201ENST00000356922 PLEKHO1Q53GL0 409 aaPredicted RBP5.33□□□□□ -1.56
LIG4-201ENST00000356922 GNAT3A8MTJ3 354 aa5.32□□□□□ -1.56
LIG4-201ENST00000356922 KCNA4P22459 653 aa5.32□□□□□ -1.56
LIG4-201ENST00000356922 SLC39A6Q13433 755 aa5.32□□□□□ -1.56
LIG4-201ENST00000356922 NKX1-1Q15270 411 aaPredicted RBP5.32□□□□□ -1.56
LIG4-201ENST00000356922 IFNL2Q8IZJ0 200 aa5.32□□□□□ -1.56
LIG4-201ENST00000356922 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP5.32□□□□□ -1.56
LIG4-201ENST00000356922 PRAMEF22A3QJZ6 481 aa5.32□□□□□ -1.56
LIG4-201ENST00000356922 RNMTO43148 476 aaKnown RBP5.32□□□□□ -1.56
LIG4-201ENST00000356922 AMOTQ4VCS5 1084 aa5.32□□□□□ -1.56
LIG4-201ENST00000356922 AKAP4Q5JQC9 854 aa5.32□□□□□ -1.56
LIG4-201ENST00000356922 KRT27Q7Z3Y8 459 aa5.32□□□□□ -1.56
LIG4-201ENST00000356922 PIGBQ92521 554 aa5.32□□□□□ -1.56
LIG4-201ENST00000356922 WNK3Q9BYP7 1800 aa5.32□□□□□ -1.56
LIG4-201ENST00000356922 PKD1L3Q7Z443 1732 aa5.32□□□□□ -1.56
LIG4-201ENST00000356922 PDE3BQ13370 1112 aa5.32□□□□□ -1.56
LIG4-201ENST00000356922 TSR2Q969E8 191 aaKnown RBP5.32□□□□□ -1.56
LIG4-201ENST00000356922 ASAP1Q9ULH1 1129 aa5.32□□□□□ -1.56
LIG4-201ENST00000356922 SPG7Q9UQ90 795 aa5.32□□□□□ -1.56
LIG4-201ENST00000356922 PARP4Q9UKK3 1724 aaKnown RBP5.31□□□□□ -1.56
LIG4-201ENST00000356922 TOGARAM1Q9Y4F4 1720 aa5.31□□□□□ -1.56
LIG4-201ENST00000356922 MAPK8IP3Q9UPT6 1336 aa5.31□□□□□ -1.56
LIG4-201ENST00000356922 TNS2Q63HR2 1409 aa5.31□□□□□ -1.56
LIG4-201ENST00000356922 SLC4A9Q96Q91 983 aa5.31□□□□□ -1.56
LIG4-201ENST00000356922 CEMIPQ8WUJ3 1361 aa5.31□□□□□ -1.56
LIG4-201ENST00000356922 TRIM37O94972 964 aa5.31□□□□□ -1.56
LIG4-201ENST00000356922 SYTL4Q96C24 671 aaPredicted RBP5.31□□□□□ -1.56
LIG4-201ENST00000356922 PCDH11XQ9BZA7 1347 aa5.31□□□□□ -1.56
LIG4-201ENST00000356922 PCDH11YQ9BZA8 1340 aa5.31□□□□□ -1.56
LIG4-201ENST00000356922 GAS2L2Q8NHY3 880 aa5.31□□□□□ -1.56
LIG4-201ENST00000356922 MAP3K5Q99683 1374 aa5.31□□□□□ -1.56
LIG4-201ENST00000356922 PROM2Q8N271 834 aa5.3□□□□□ -1.56
LIG4-201ENST00000356922 LAS1LQ9Y4W2 734 aaKnown RBP5.3□□□□□ -1.56
LIG4-201ENST00000356922 ZNF853P0CG23 659 aa5.3□□□□□ -1.56
LIG4-201ENST00000356922 C1orf141Q5JVX7 400 aa5.3□□□□□ -1.56
LIG4-201ENST00000356922 SMIM5Q71RC9 77 aa5.3□□□□□ -1.56
LIG4-201ENST00000356922 DCAF5Q96JK2 942 aa5.3□□□□□ -1.56
LIG4-201ENST00000356922 CDCA7Q9BWT1 371 aaPredicted RBP5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms