RNA–Protein interactions for RNA: ENST00000355480.9

COL18A1-202, Transcript of collagen type XVIII alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL18A1, Length 5,924 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-202ENST00000355480 MPHOSPH10O00566 681 aaKnown RBP21.3■■□□□ 1
COL18A1-202ENST00000355480 DCTN1Q14203 1278 aa21.3■■□□□ 1
COL18A1-202ENST00000355480 K7ELQ4 463 aaPredicted RBP21.29■■□□□ 1
COL18A1-202ENST00000355480 NFE2L2Q16236 605 aa21.29■■□□□ 1
COL18A1-202ENST00000355480 CCDC61Q9Y6R9 512 aa21.29■■□□□ 1
COL18A1-202ENST00000355480 ABCF2Q9UG63 623 aa21.28■■□□□ 1
COL18A1-202ENST00000355480 ZNF76P36508 570 aa21.28■■□□□ 1
COL18A1-202ENST00000355480 PIBF1Q8WXW3 757 aa21.28■■□□□ 1
COL18A1-202ENST00000355480 LUC7LQ9NQ29 371 aaKnown RBP21.28■■□□□ 1
COL18A1-202ENST00000355480 AIDAQ96BJ3 306 aa21.28■■□□□ 1
COL18A1-202ENST00000355480 BMP2KQ9NSY1 1161 aaPredicted RBP21.28■■□□□ 1
COL18A1-202ENST00000355480 TMOD2Q9NZR1 351 aa21.28■■□□□ 1
COL18A1-202ENST00000355480 PTCD1O75127 700 aaKnown RBP21.27■■□□□ 1
COL18A1-202ENST00000355480 METTL24Q5JXM2 366 aa21.27■■□□□ 1
COL18A1-202ENST00000355480 MIS18AQ9NYP9 233 aa21.27■■□□□ 1
COL18A1-202ENST00000355480 USP5P45974 858 aa21.26■□□□□ 0.99
COL18A1-202ENST00000355480 KRT32Q14532 448 aa21.26■□□□□ 0.99
COL18A1-202ENST00000355480 TMOD3Q9NYL9 352 aa21.26■□□□□ 0.99
COL18A1-202ENST00000355480 RPAP2Q8IXW5 612 aaPredicted RBP21.25■□□□□ 0.99
COL18A1-202ENST00000355480 ZNF652Q9Y2D9 606 aa21.25■□□□□ 0.99
COL18A1-202ENST00000355480 AKNAQ7Z591 1439 aa21.25■□□□□ 0.99
COL18A1-202ENST00000355480 NSD3Q9BZ95 1437 aa21.25■□□□□ 0.99
COL18A1-202ENST00000355480 EFCAB5A4FU69 1503 aa21.25■□□□□ 0.99
COL18A1-202ENST00000355480 NUTM1Q86Y26 1132 aa21.25■□□□□ 0.99
COL18A1-202ENST00000355480 ZSCAN31Q96LW9 406 aaPredicted RBP21.25■□□□□ 0.99
COL18A1-202ENST00000355480 NESP48681 1621 aa21.25■□□□□ 0.99
COL18A1-202ENST00000355480 IMMTQ16891 758 aaKnown RBP21.24■□□□□ 0.99
COL18A1-202ENST00000355480 SPATA32Q96LK8 384 aa21.24■□□□□ 0.99
COL18A1-202ENST00000355480 NOM1Q5C9Z4 860 aaKnown RBP21.24■□□□□ 0.99
COL18A1-202ENST00000355480 SNAPC4Q5SXM2 1469 aa21.24■□□□□ 0.99
COL18A1-202ENST00000355480 ERLIN2O94905 339 aa21.24■□□□□ 0.99
COL18A1-202ENST00000355480 TMPOP42166 694 aaKnown RBP21.24■□□□□ 0.99
COL18A1-202ENST00000355480 ZPR1O75312 459 aa21.23■□□□□ 0.99
COL18A1-202ENST00000355480 NEFHP12036 1026 aa21.23■□□□□ 0.99
COL18A1-202ENST00000355480 HMGB2P26583 209 aaKnown RBP21.23■□□□□ 0.99
COL18A1-202ENST00000355480 MCM10Q7L590 875 aa21.23■□□□□ 0.99
COL18A1-202ENST00000355480 DUSP27Q5VZP5 1158 aa21.23■□□□□ 0.99
COL18A1-202ENST00000355480 WASF1Q92558 559 aa21.22■□□□□ 0.99
COL18A1-202ENST00000355480 MATR3P43243 847 aaKnown RBP eCLIP21.22■□□□□ 0.991e-7■■■■□ 24.2
COL18A1-202ENST00000355480 WAPLQ7Z5K2 1190 aa21.22■□□□□ 0.99
COL18A1-202ENST00000355480 SEPT11Q9NVA2 429 aaKnown RBP21.22■□□□□ 0.99
COL18A1-202ENST00000355480 CCDC181Q5TID7 509 aa21.22■□□□□ 0.99
COL18A1-202ENST00000355480 CFAP45Q9UL16 551 aa21.22■□□□□ 0.99
COL18A1-202ENST00000355480 DAPK1P53355 1430 aa21.22■□□□□ 0.99
COL18A1-202ENST00000355480 EXOC6BQ9Y2D4 811 aa21.22■□□□□ 0.99
COL18A1-202ENST00000355480 AXDND1Q5T1B0 1012 aaPredicted RBP21.21■□□□□ 0.99
COL18A1-202ENST00000355480 HECW1Q76N89 1606 aa21.21■□□□□ 0.99
COL18A1-202ENST00000355480 DHX8Q14562 1220 aaKnown RBP21.21■□□□□ 0.99
COL18A1-202ENST00000355480 TXLNBQ8N3L3 684 aa21.21■□□□□ 0.99
COL18A1-202ENST00000355480 AKAP2Q9Y2D5 859 aa21.21■□□□□ 0.99
COL18A1-202ENST00000355480 H0YHG0 523 aa21.21■□□□□ 0.99
COL18A1-202ENST00000355480 PPP6R1Q9UPN7 881 aa21.21■□□□□ 0.99
COL18A1-202ENST00000355480 CAVIN4Q5BKX8 364 aa21.2■□□□□ 0.99
COL18A1-202ENST00000355480 THUMPD2Q9BTF0 503 aaKnown RBP21.2■□□□□ 0.99
COL18A1-202ENST00000355480 TMEM57Q8N5G2 664 aa21.2■□□□□ 0.98
COL18A1-202ENST00000355480 CBFA2T2O43439 604 aa21.2■□□□□ 0.98
COL18A1-202ENST00000355480 CEP57L1Q8IYX8 460 aa21.2■□□□□ 0.98
COL18A1-202ENST00000355480 MAP7D2Q96T17 732 aa21.19■□□□□ 0.98
COL18A1-202ENST00000355480 LARP1Q6PKG0 1096 aaKnown RBP21.19■□□□□ 0.98
COL18A1-202ENST00000355480 IFIT1P09914 478 aaKnown RBP21.19■□□□□ 0.98
COL18A1-202ENST00000355480 MYD88Q99836 296 aa21.19■□□□□ 0.98
COL18A1-202ENST00000355480 ZNF287Q9HBT7 754 aa21.19■□□□□ 0.98
COL18A1-202ENST00000355480 POLR3DP05423 398 aaPredicted RBP21.19■□□□□ 0.98
COL18A1-202ENST00000355480 CASTP20810 708 aaKnown RBP21.19■□□□□ 0.98
COL18A1-202ENST00000355480 USHBP1Q8N6Y0 703 aa21.18■□□□□ 0.98
COL18A1-202ENST00000355480 CCDC191Q8NCU4 936 aa21.18■□□□□ 0.98
COL18A1-202ENST00000355480 KIF1BPQ96EK5 621 aa21.18■□□□□ 0.98
COL18A1-202ENST00000355480 CRACR2BQ8N4Y2 399 aaPredicted RBP21.18■□□□□ 0.98
COL18A1-202ENST00000355480 DDX11Q96FC9 970 aa21.18■□□□□ 0.98
COL18A1-202ENST00000355480 IBSPP21815 317 aaPredicted RBP21.17■□□□□ 0.98
COL18A1-202ENST00000355480 ANKIB1Q9P2G1 1089 aa21.17■□□□□ 0.98
COL18A1-202ENST00000355480 ADAMTS2O95450 1211 aa21.17■□□□□ 0.98
COL18A1-202ENST00000355480 MINDY4BA8MYZ0 360 aa21.17■□□□□ 0.98
COL18A1-202ENST00000355480 FAM177A1Q8N128 213 aaPredicted RBP21.16■□□□□ 0.98
COL18A1-202ENST00000355480 MPNDQ8N594 471 aa21.16■□□□□ 0.98
COL18A1-202ENST00000355480 MPRIPQ6WCQ1 1025 aa21.16■□□□□ 0.98
COL18A1-202ENST00000355480 MKNK2Q9HBH9 465 aa21.16■□□□□ 0.98
COL18A1-202ENST00000355480 SEC63Q9UGP8 760 aaKnown RBP21.16■□□□□ 0.98
COL18A1-202ENST00000355480 GOLGA6L10A6NI86 522 aa21.16■□□□□ 0.98
COL18A1-202ENST00000355480 NUP62CLQ9H1M0 184 aa21.16■□□□□ 0.98
COL18A1-202ENST00000355480 SEPT7Q16181 437 aaKnown RBP21.15■□□□□ 0.98
COL18A1-202ENST00000355480 U3KPZ7 1027 aaPredicted RBP21.15■□□□□ 0.98
COL18A1-202ENST00000355480 TAF7Q15545 349 aaPredicted RBP21.15■□□□□ 0.98
COL18A1-202ENST00000355480 AMOTQ4VCS5 1084 aa21.15■□□□□ 0.98
COL18A1-202ENST00000355480 ANKRD62A6NC57 917 aa21.14■□□□□ 0.98
COL18A1-202ENST00000355480 CEP131Q9UPN4 1083 aa21.14■□□□□ 0.98
COL18A1-202ENST00000355480 GLRX3O76003 335 aaKnown RBP21.14■□□□□ 0.98
COL18A1-202ENST00000355480 MX1P20591 662 aa21.14■□□□□ 0.98
COL18A1-202ENST00000355480 CWC15Q9P013 229 aaKnown RBP21.14■□□□□ 0.98
COL18A1-202ENST00000355480 RAB11FIP3O75154 756 aa21.14■□□□□ 0.97
COL18A1-202ENST00000355480 BACH2Q9BYV9 841 aa21.14■□□□□ 0.97
COL18A1-202ENST00000355480 UPF3BQ9BZI7 483 aaKnown RBP21.14■□□□□ 0.97
COL18A1-202ENST00000355480 DZIP1Q86YF9 867 aaKnown RBP21.14■□□□□ 0.97
COL18A1-202ENST00000355480 HMGN5P82970 282 aaKnown RBP21.13■□□□□ 0.97
COL18A1-202ENST00000355480 BOLA2Q9H3K6 86 aa21.13■□□□□ 0.97
COL18A1-202ENST00000355480 SLFN5Q08AF3 891 aa21.13■□□□□ 0.97
COL18A1-202ENST00000355480 TOPBP1Q92547 1522 aa21.13■□□□□ 0.97
COL18A1-202ENST00000355480 DESP17661 470 aa21.13■□□□□ 0.97
COL18A1-202ENST00000355480 ZRSR2Q15696 482 aaKnown RBP21.13■□□□□ 0.97
COL18A1-202ENST00000355480 TSPYL1Q9H0U9 437 aa21.13■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms