RNA–Protein interactions for RNA: ENST00000354193.4

SVIP-201, Transcript of small VCP interacting protein, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SVIP, Length 4,541 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SVIP-201ENST00000354193 MYOM1P52179 1685 aa13.97□□□□□ -0.17
SVIP-201ENST00000354193 PTCD1O75127 700 aaKnown RBP13.97□□□□□ -0.17
SVIP-201ENST00000354193 AXIN2Q9Y2T1 843 aa13.97□□□□□ -0.17
SVIP-201ENST00000354193 RNF123Q5XPI4 1314 aa13.97□□□□□ -0.17
SVIP-201ENST00000354193 MYL6BP14649 208 aa13.96□□□□□ -0.17
SVIP-201ENST00000354193 PDZRN3Q9UPQ7 1066 aa13.96□□□□□ -0.17
SVIP-201ENST00000354193 TAF7Q15545 349 aaPredicted RBP13.95□□□□□ -0.18
SVIP-201ENST00000354193 TRMT2AQ8IZ69 625 aaKnown RBP13.95□□□□□ -0.18
SVIP-201ENST00000354193 MYO3AQ8NEV4 1616 aa13.94□□□□□ -0.18
SVIP-201ENST00000354193 SPRYD3Q8NCJ5 442 aa13.94□□□□□ -0.18
SVIP-201ENST00000354193 UBR1Q8IWV7 1749 aa13.94□□□□□ -0.18
SVIP-201ENST00000354193 TECPR2O15040 1411 aa13.94□□□□□ -0.18
SVIP-201ENST00000354193 PIK3R4Q99570 1358 aa13.93□□□□□ -0.18
SVIP-201ENST00000354193 KCNQ3O43525 872 aa13.93□□□□□ -0.18
SVIP-201ENST00000354193 G2E3Q7L622 706 aa13.93□□□□□ -0.18
SVIP-201ENST00000354193 DLC1Q96QB1 1528 aa13.93□□□□□ -0.18
SVIP-201ENST00000354193 MFAP1P55081 439 aaKnown RBP13.93□□□□□ -0.18
SVIP-201ENST00000354193 CCDC30Q5VVM6 783 aa13.93□□□□□ -0.18
SVIP-201ENST00000354193 IL17REQ8NFR9 667 aa13.93□□□□□ -0.18
SVIP-201ENST00000354193 AATKQ6ZMQ8 1374 aa13.93□□□□□ -0.18
SVIP-201ENST00000354193 CHMP3Q9Y3E7 222 aa13.92□□□□□ -0.18
SVIP-201ENST00000354193 CHMP4BQ9H444 224 aaKnown RBP13.92□□□□□ -0.18
SVIP-201ENST00000354193 ARHGEF25Q86VW2 580 aa13.91□□□□□ -0.18
SVIP-201ENST00000354193 IL16Q14005 1332 aa13.91□□□□□ -0.18
SVIP-201ENST00000354193 CABP4P57796 275 aa13.91□□□□□ -0.18
SVIP-201ENST00000354193 INSRP06213 1382 aa13.91□□□□□ -0.18
SVIP-201ENST00000354193 ADGRL3Q9HAR2 1447 aa13.91□□□□□ -0.18
SVIP-201ENST00000354193 CT47B1P0C2W7 299 aaPredicted RBP13.91□□□□□ -0.18
SVIP-201ENST00000354193 BRINP3Q76B58 766 aa13.91□□□□□ -0.18
SVIP-201ENST00000354193 NFATC2IPQ8NCF5 419 aa13.91□□□□□ -0.18
SVIP-201ENST00000354193 C9orf78Q9NZ63 289 aaPredicted RBP13.9□□□□□ -0.18
SVIP-201ENST00000354193 PNPLA6Q8IY17 1366 aa13.9□□□□□ -0.18
SVIP-201ENST00000354193 MRPL50Q8N5N7 158 aaKnown RBP13.9□□□□□ -0.18
SVIP-201ENST00000354193 RBM42Q9BTD8 480 aaKnown RBP13.9□□□□□ -0.18
SVIP-201ENST00000354193 SPG7Q9UQ90 795 aa13.9□□□□□ -0.18
SVIP-201ENST00000354193 ARHGAP23Q9P227 1491 aa13.9□□□□□ -0.19
SVIP-201ENST00000354193 PTCH1Q13635 1447 aa13.89□□□□□ -0.19
SVIP-201ENST00000354193 DIP2AQ14689 1571 aa13.89□□□□□ -0.19
SVIP-201ENST00000354193 ALDH1L2Q3SY69 923 aa13.89□□□□□ -0.19
SVIP-201ENST00000354193 JARID2Q92833 1246 aaPredicted RBP13.89□□□□□ -0.19
SVIP-201ENST00000354193 UBAP1LF5GYI3 381 aa13.88□□□□□ -0.19
SVIP-201ENST00000354193 CHL1O00533 1208 aa13.88□□□□□ -0.19
SVIP-201ENST00000354193 PHAXQ9H814 394 aaKnown RBP13.88□□□□□ -0.19
SVIP-201ENST00000354193 KIAA0232Q92628 1395 aa13.88□□□□□ -0.19
SVIP-201ENST00000354193 FLIIQ13045 1269 aa13.88□□□□□ -0.19
SVIP-201ENST00000354193 RIC3Q7Z5B4 369 aa13.88□□□□□ -0.19
SVIP-201ENST00000354193 MEIS3Q99687 375 aa13.88□□□□□ -0.19
SVIP-201ENST00000354193 FAM161AQ3B820 660 aa13.87□□□□□ -0.19
SVIP-201ENST00000354193 PHF23Q9BUL5 403 aaPredicted RBP13.87□□□□□ -0.19
SVIP-201ENST00000354193 LMTK3Q96Q04 1460 aa13.87□□□□□ -0.19
SVIP-201ENST00000354193 AMOTQ4VCS5 1084 aa13.87□□□□□ -0.19
SVIP-201ENST00000354193 BTG4Q9NY30 223 aa13.87□□□□□ -0.19
SVIP-201ENST00000354193 IGSF1Q8N6C5 1336 aa13.87□□□□□ -0.19
SVIP-201ENST00000354193 SLIT1O75093 1534 aa13.87□□□□□ -0.19
SVIP-201ENST00000354193 HSP90AA1P07900 732 aaKnown RBP13.87□□□□□ -0.19
SVIP-201ENST00000354193 CHPF2Q9P2E5 772 aa13.87□□□□□ -0.19
SVIP-201ENST00000354193 CDC42BPGQ6DT37 1551 aa13.86□□□□□ -0.19
SVIP-201ENST00000354193 EXOC6BQ9Y2D4 811 aa13.86□□□□□ -0.19
SVIP-201ENST00000354193 SMARCA5O60264 1052 aaPredicted RBP13.86□□□□□ -0.19
SVIP-201ENST00000354193 NRXN3Q9Y4C0 1643 aa13.86□□□□□ -0.19
SVIP-201ENST00000354193 MAP2P11137 1827 aaKnown RBP13.86□□□□□ -0.19
SVIP-201ENST00000354193 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.86□□□□□ -0.19
SVIP-201ENST00000354193 LRRC7Q96NW7 1537 aa13.85□□□□□ -0.19
SVIP-201ENST00000354193 CDK12Q9NYV4 1490 aaPredicted RBP13.85□□□□□ -0.19
SVIP-201ENST00000354193 MAP3K5Q99683 1374 aa13.85□□□□□ -0.19
SVIP-201ENST00000354193 PI4KAP2A4QPH2 592 aa13.85□□□□□ -0.19
SVIP-201ENST00000354193 UBTFL1P0CB47 393 aaPredicted RBP13.85□□□□□ -0.19
SVIP-201ENST00000354193 PI4KAP1Q8N8J0 262 aa13.85□□□□□ -0.19
SVIP-201ENST00000354193 PRAMEF22A3QJZ6 481 aa13.85□□□□□ -0.19
SVIP-201ENST00000354193 FAM177BA6PVY3 158 aa13.85□□□□□ -0.19
SVIP-201ENST00000354193 OVOS2A0A0J9YW53 1432 aa13.85□□□□□ -0.19
SVIP-201ENST00000354193 OVOS2Q6IE36 1432 aa13.85□□□□□ -0.19
SVIP-201ENST00000354193 TRIM6-TRIM34B2RNG4 842 aa13.84□□□□□ -0.19
SVIP-201ENST00000354193 HMMRO75330 724 aa13.84□□□□□ -0.19
SVIP-201ENST00000354193 AKAP4Q5JQC9 854 aa13.84□□□□□ -0.19
SVIP-201ENST00000354193 IFNL2Q8IZJ0 200 aa13.84□□□□□ -0.19
SVIP-201ENST00000354193 NOP58Q9Y2X3 529 aaKnown RBP13.84□□□□□ -0.19
SVIP-201ENST00000354193 LARP1Q6PKG0 1096 aaKnown RBP13.83□□□□□ -0.19
SVIP-201ENST00000354193 BACH2Q9BYV9 841 aa13.83□□□□□ -0.19
SVIP-201ENST00000354193 C1orf167Q5SNV9 1468 aa13.83□□□□□ -0.19
SVIP-201ENST00000354193 ANKARQ7Z5J8 1434 aa13.83□□□□□ -0.2
SVIP-201ENST00000354193 RNMTO43148 476 aaKnown RBP13.83□□□□□ -0.2
SVIP-201ENST00000354193 IL1RAPL2Q9NP60 686 aa13.82□□□□□ -0.2
SVIP-201ENST00000354193 SLKQ9H2G2 1235 aaPredicted RBP13.82□□□□□ -0.2
SVIP-201ENST00000354193 ERBB3P21860 1342 aa13.82□□□□□ -0.2
SVIP-201ENST00000354193 MED14O60244 1454 aa13.82□□□□□ -0.2
SVIP-201ENST00000354193 RILPL2Q969X0 211 aa13.82□□□□□ -0.2
SVIP-201ENST00000354193 SRCIN1Q9C0H9 1055 aa13.82□□□□□ -0.2
SVIP-201ENST00000354193 ARHGEF10O15013 1369 aa13.81□□□□□ -0.2
SVIP-201ENST00000354193 SURF6O75683 361 aaKnown RBP13.81□□□□□ -0.2
SVIP-201ENST00000354193 MEX3CQ5U5Q3 659 aaKnown RBP13.81□□□□□ -0.2
SVIP-201ENST00000354193 TSHZ3Q63HK5 1081 aa13.81□□□□□ -0.2
SVIP-201ENST00000354193 ZCRB1Q8TBF4 217 aaKnown RBP13.81□□□□□ -0.2
SVIP-201ENST00000354193 NGLY1Q96IV0 654 aa13.81□□□□□ -0.2
SVIP-201ENST00000354193 CCDC85AQ96PX6 553 aaPredicted RBP13.81□□□□□ -0.2
SVIP-201ENST00000354193 NEXNQ0ZGT2 675 aa13.81□□□□□ -0.2
SVIP-201ENST00000354193 SIL1Q9H173 461 aa13.81□□□□□ -0.2
SVIP-201ENST00000354193 ACSBG1Q96GR2 724 aa13.8□□□□□ -0.2
SVIP-201ENST00000354193 LRRFIP2Q9Y608 721 aaKnown RBP13.8□□□□□ -0.2
SVIP-201ENST00000354193 ATP5J2-PTCD1G3V325 749 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms