RNA–Protein interactions for RNA: ENST00000349062.6

TRIM4-201, Transcript of tripartite motif containing 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRIM4, Length 3,374 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4-201ENST00000349062 FLT4P35916 1363 aa17.41■□□□□ 0.38
TRIM4-201ENST00000349062 C3P01024 1663 aa17.4■□□□□ 0.38
TRIM4-201ENST00000349062 TTC21AQ8NDW8 1320 aa17.4■□□□□ 0.38
TRIM4-201ENST00000349062 CHD1LQ86WJ1 897 aa17.4■□□□□ 0.38
TRIM4-201ENST00000349062 ADGRB2O60241 1585 aa17.4■□□□□ 0.38
TRIM4-201ENST00000349062 NBPF6Q5VWK0 638 aa17.4■□□□□ 0.38
TRIM4-201ENST00000349062 NBPF4Q96M43 638 aa17.4■□□□□ 0.38
TRIM4-201ENST00000349062 LGR6Q9HBX8 967 aa17.39■□□□□ 0.37
TRIM4-201ENST00000349062 GNAT3A8MTJ3 354 aa17.39■□□□□ 0.37
TRIM4-201ENST00000349062 CHL1O00533 1208 aa17.39■□□□□ 0.37
TRIM4-201ENST00000349062 FER1L4A9Z1Z3 1794 aa17.38■□□□□ 0.37
TRIM4-201ENST00000349062 RGPD8O14715 1765 aaPredicted RBP17.38■□□□□ 0.37
TRIM4-201ENST00000349062 CSB-PGBD3P0DP91 1061 aa17.38■□□□□ 0.37
TRIM4-201ENST00000349062 SIRT2Q8IXJ6 389 aa17.38■□□□□ 0.37
TRIM4-201ENST00000349062 GAS2L2Q8NHY3 880 aa17.38■□□□□ 0.37
TRIM4-201ENST00000349062 TSHZ3Q63HK5 1081 aa17.37■□□□□ 0.37
TRIM4-201ENST00000349062 OVOS2A0A0J9YW53 1432 aa17.37■□□□□ 0.37
TRIM4-201ENST00000349062 OVOS2Q6IE36 1432 aa17.37■□□□□ 0.37
TRIM4-201ENST00000349062 CHRNA2Q15822 529 aa17.37■□□□□ 0.37
TRIM4-201ENST00000349062 OTUD7AQ8TE49 926 aaPredicted RBP17.37■□□□□ 0.37
TRIM4-201ENST00000349062 HDAC1Q13547 482 aaPredicted RBP17.36■□□□□ 0.37
TRIM4-201ENST00000349062 IL17REQ8NFR9 667 aa17.36■□□□□ 0.37
TRIM4-201ENST00000349062 KCNQ3O43525 872 aa17.36■□□□□ 0.37
TRIM4-201ENST00000349062 ZNF530Q6P9A1 599 aaPredicted RBP17.36■□□□□ 0.37
TRIM4-201ENST00000349062 SBNO1A3KN83 1393 aa17.36■□□□□ 0.37
TRIM4-201ENST00000349062 NLRP2Q9NX02 1062 aa17.36■□□□□ 0.37
TRIM4-201ENST00000349062 ITSN1Q15811 1721 aa17.35■□□□□ 0.37
TRIM4-201ENST00000349062 ANKRD26Q9UPS8 1709 aa17.35■□□□□ 0.37
TRIM4-201ENST00000349062 TEFQ10587 303 aa17.35■□□□□ 0.37
TRIM4-201ENST00000349062 C22orf23Q9BZE7 217 aa17.35■□□□□ 0.37
TRIM4-201ENST00000349062 EXOC6BQ9Y2D4 811 aa17.34■□□□□ 0.37
TRIM4-201ENST00000349062 USP19O94966 1318 aa17.34■□□□□ 0.37
TRIM4-201ENST00000349062 KRT28Q7Z3Y7 464 aa17.34■□□□□ 0.37
TRIM4-201ENST00000349062 SMC5Q8IY18 1101 aa17.34■□□□□ 0.37
TRIM4-201ENST00000349062 DIP2AQ14689 1571 aa17.34■□□□□ 0.37
TRIM4-201ENST00000349062 GCP02774 474 aa17.34■□□□□ 0.37
TRIM4-201ENST00000349062 RIMS1Q86UR5 1692 aaKnown RBP17.33■□□□□ 0.37
TRIM4-201ENST00000349062 BECN1Q14457 450 aa17.33■□□□□ 0.37
TRIM4-201ENST00000349062 ATF3P18847 181 aa17.33■□□□□ 0.36
TRIM4-201ENST00000349062 NUCB1Q02818 461 aa17.33■□□□□ 0.36
TRIM4-201ENST00000349062 AAMPQ13685 434 aa17.33■□□□□ 0.36
TRIM4-201ENST00000349062 HDGFL1Q5TGJ6 251 aa17.33■□□□□ 0.36
TRIM4-201ENST00000349062 PHAXQ9H814 394 aaKnown RBP17.33■□□□□ 0.36
TRIM4-201ENST00000349062 NCBP3Q53F19 620 aaKnown RBP17.32■□□□□ 0.36
TRIM4-201ENST00000349062 HAP1P54257 671 aaPredicted RBP17.32■□□□□ 0.36
TRIM4-201ENST00000349062 MSH6P52701 1360 aa17.32■□□□□ 0.36
TRIM4-201ENST00000349062 AIMP1Q12904 312 aaKnown RBP17.31■□□□□ 0.36
TRIM4-201ENST00000349062 HSP90AA1P07900 732 aaKnown RBP17.31■□□□□ 0.36
TRIM4-201ENST00000349062 CEP170BQ9Y4F5 1589 aaPredicted RBP17.3■□□□□ 0.36
TRIM4-201ENST00000349062 IGSF1Q8N6C5 1336 aa17.3■□□□□ 0.36
TRIM4-201ENST00000349062 PIP4K2AP48426 406 aaPredicted RBP17.3■□□□□ 0.36
TRIM4-201ENST00000349062 FLIIQ13045 1269 aa17.29■□□□□ 0.36
TRIM4-201ENST00000349062 AXIN2Q9Y2T1 843 aa17.29■□□□□ 0.36
TRIM4-201ENST00000349062 ABCC4O15439 1325 aa17.29■□□□□ 0.36
TRIM4-201ENST00000349062 TAF7Q15545 349 aaPredicted RBP17.29■□□□□ 0.36
TRIM4-201ENST00000349062 C1orf141Q5JVX7 400 aa17.29■□□□□ 0.36
TRIM4-201ENST00000349062 ANKRD24Q8TF21 1146 aa17.29■□□□□ 0.36
TRIM4-201ENST00000349062 ARHGAP45Q92619 1136 aa17.29■□□□□ 0.36
TRIM4-201ENST00000349062 CHMP4BQ9H444 224 aaKnown RBP17.29■□□□□ 0.36
TRIM4-201ENST00000349062 USP31Q70CQ4 1352 aa17.28■□□□□ 0.36
TRIM4-201ENST00000349062 PIK3R4Q99570 1358 aa17.28■□□□□ 0.36
TRIM4-201ENST00000349062 SLC39A6Q13433 755 aa17.28■□□□□ 0.36
TRIM4-201ENST00000349062 IP6K1Q92551 441 aa17.28■□□□□ 0.36
TRIM4-201ENST00000349062 TBC1D2Q9BYX2 928 aa17.28■□□□□ 0.36
TRIM4-201ENST00000349062 PRAMEF22A3QJZ6 481 aa17.27■□□□□ 0.36
TRIM4-201ENST00000349062 CCDC30Q5VVM6 783 aa17.27■□□□□ 0.36
TRIM4-201ENST00000349062 ARHGAP23Q9P227 1491 aa17.27■□□□□ 0.36
TRIM4-201ENST00000349062 DLG5Q8TDM6 1919 aa17.27■□□□□ 0.36
TRIM4-201ENST00000349062 BTBD11A6QL63 1104 aa17.27■□□□□ 0.35
TRIM4-201ENST00000349062 TBC1D32Q96NH3 1257 aa17.27■□□□□ 0.35
TRIM4-201ENST00000349062 RBM42Q9BTD8 480 aaKnown RBP17.27■□□□□ 0.35
TRIM4-201ENST00000349062 MON2Q7Z3U7 1717 aa17.26■□□□□ 0.35
TRIM4-201ENST00000349062 IL1RAPL2Q9NP60 686 aa17.26■□□□□ 0.35
TRIM4-201ENST00000349062 GCC1Q96CN9 775 aa17.26■□□□□ 0.35
TRIM4-201ENST00000349062 PEAK1Q9H792 1746 aa17.26■□□□□ 0.35
TRIM4-201ENST00000349062 PTCH1Q13635 1447 aa17.26■□□□□ 0.35
TRIM4-201ENST00000349062 A0A0G2JS52 829 aa17.26■□□□□ 0.35
TRIM4-201ENST00000349062 SLIT1O75093 1534 aa17.25■□□□□ 0.35
TRIM4-201ENST00000349062 CEP85Q6P2H3 762 aa17.25■□□□□ 0.35
TRIM4-201ENST00000349062 CHPF2Q9P2E5 772 aa17.25■□□□□ 0.35
TRIM4-201ENST00000349062 ARHGEF10O15013 1369 aa17.25■□□□□ 0.35
TRIM4-201ENST00000349062 MAP4K4O95819 1239 aaPredicted RBP17.25■□□□□ 0.35
TRIM4-201ENST00000349062 LRRFIP2Q9Y608 721 aaKnown RBP17.25■□□□□ 0.35
TRIM4-201ENST00000349062 SSH2Q76I76 1423 aa17.24■□□□□ 0.35
TRIM4-201ENST00000349062 TBC1D9Q6ZT07 1266 aa17.24■□□□□ 0.35
TRIM4-201ENST00000349062 GZF1Q9H116 711 aaPredicted RBP17.24■□□□□ 0.35
TRIM4-201ENST00000349062 KCNH5Q8NCM2 988 aa17.23■□□□□ 0.35
TRIM4-201ENST00000349062 NPHP4O75161 1426 aaPredicted RBP17.23■□□□□ 0.35
TRIM4-201ENST00000349062 MAP3K5Q99683 1374 aa17.23■□□□□ 0.35
TRIM4-201ENST00000349062 TRIM6-TRIM34B2RNG4 842 aa17.23■□□□□ 0.35
TRIM4-201ENST00000349062 JARID2Q92833 1246 aaPredicted RBP17.23■□□□□ 0.35
TRIM4-201ENST00000349062 RILPL2Q969X0 211 aa17.23■□□□□ 0.35
TRIM4-201ENST00000349062 MYL6BP14649 208 aa17.23■□□□□ 0.35
TRIM4-201ENST00000349062 AKAP12Q02952 1782 aa17.23■□□□□ 0.35
TRIM4-201ENST00000349062 PLEKHO1Q53GL0 409 aaPredicted RBP17.22■□□□□ 0.35
TRIM4-201ENST00000349062 INTS3Q68E01 1043 aaKnown RBP17.22■□□□□ 0.35
TRIM4-201ENST00000349062 NOL8Q76FK4 1167 aaKnown RBP17.22■□□□□ 0.35
TRIM4-201ENST00000349062 CRB1P82279 1406 aa17.22■□□□□ 0.35
TRIM4-201ENST00000349062 HSCBQ8IWL3 235 aa17.22■□□□□ 0.35
TRIM4-201ENST00000349062 PNMA6EA0A0J9YXQ4 647 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms