RNA–Protein interactions for RNA: ENST00000344626.8

SMARCA4-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best) BASIC

Gene SMARCA4, Length 5,392 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-201ENST00000344626 C1orf115Q9H7X2 142 aa19.86■□□□□ 0.77
SMARCA4-201ENST00000344626 C6orf229H3BNL8 230 aa19.86■□□□□ 0.77
SMARCA4-201ENST00000344626 CHAF1AQ13111 956 aaPredicted RBP19.86■□□□□ 0.77
SMARCA4-201ENST00000344626 SLC39A6Q13433 755 aa19.86■□□□□ 0.77
SMARCA4-201ENST00000344626 C11orf95C9JLR9 678 aaPredicted RBP19.85■□□□□ 0.77
SMARCA4-201ENST00000344626 YTHDC2Q9H6S0 1430 aaKnown RBP19.85■□□□□ 0.77
SMARCA4-201ENST00000344626 MYD88Q99836 296 aa19.85■□□□□ 0.77
SMARCA4-201ENST00000344626 BAG6P46379 1132 aa19.85■□□□□ 0.77
SMARCA4-201ENST00000344626 ATP2B2Q01814 1243 aa19.84■□□□□ 0.77
SMARCA4-201ENST00000344626 HSP90AB3PQ58FF7 597 aa19.84■□□□□ 0.77
SMARCA4-201ENST00000344626 ATF7IPQ6VMQ6 1270 aa19.84■□□□□ 0.77
SMARCA4-201ENST00000344626 LARP1Q6PKG0 1096 aaKnown RBP19.84■□□□□ 0.77
SMARCA4-201ENST00000344626 QTRT2Q9H974 415 aaKnown RBP19.84■□□□□ 0.77
SMARCA4-201ENST00000344626 STK32BQ9NY57 414 aa19.84■□□□□ 0.77
SMARCA4-201ENST00000344626 SLC3A2P08195 630 aaKnown RBP19.84■□□□□ 0.77
SMARCA4-201ENST00000344626 NBPF6Q5VWK0 638 aa19.84■□□□□ 0.77
SMARCA4-201ENST00000344626 NBPF5PQ86XG9 351 aaPredicted RBP19.84■□□□□ 0.77
SMARCA4-201ENST00000344626 NBPF4Q96M43 638 aa19.84■□□□□ 0.77
SMARCA4-201ENST00000344626 DDX24Q9GZR7 859 aaKnown RBP eCLIP19.84■□□□□ 0.777e-8■■□□□ 12
SMARCA4-201ENST00000344626 DNMT1P26358 1616 aaKnown RBP19.84■□□□□ 0.77
SMARCA4-201ENST00000344626 SPINK5Q9NQ38 1064 aaPredicted RBP19.84■□□□□ 0.77
SMARCA4-201ENST00000344626 L1TD1Q5T7N2 865 aaKnown RBP19.83■□□□□ 0.76
SMARCA4-201ENST00000344626 EIF2AK4Q9P2K8 1649 aaKnown RBP19.83■□□□□ 0.76
SMARCA4-201ENST00000344626 PDE4AP27815 886 aa19.83■□□□□ 0.76
SMARCA4-201ENST00000344626 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.82■□□□□ 0.765e-7■■□□□ 12.9
SMARCA4-201ENST00000344626 TMOD2Q9NZR1 351 aa19.82■□□□□ 0.76
SMARCA4-201ENST00000344626 APBA3O96018 575 aa19.82■□□□□ 0.76
SMARCA4-201ENST00000344626 RALGAPBQ86X10 1494 aa19.82■□□□□ 0.76
SMARCA4-201ENST00000344626 FOXD4L1Q9NU39 408 aa19.82■□□□□ 0.76
SMARCA4-201ENST00000344626 PRAG1Q86YV5 1406 aa19.82■□□□□ 0.76
SMARCA4-201ENST00000344626 CDC45O75419 566 aa19.82■□□□□ 0.76
SMARCA4-201ENST00000344626 TRPM2O94759 1503 aa19.81■□□□□ 0.76
SMARCA4-201ENST00000344626 ABCF2Q9UG63 623 aa19.81■□□□□ 0.76
SMARCA4-201ENST00000344626 DISP3Q9P2K9 1392 aa19.81■□□□□ 0.76
SMARCA4-201ENST00000344626 SRGAP3O43295 1099 aa19.81■□□□□ 0.76
SMARCA4-201ENST00000344626 RTCBQ9Y3I0 505 aaKnown RBP19.81■□□□□ 0.76
SMARCA4-201ENST00000344626 KDM6BO15054 1643 aa19.81■□□□□ 0.76
SMARCA4-201ENST00000344626 SNRPA1P09661 255 aaKnown RBP19.8■□□□□ 0.76
SMARCA4-201ENST00000344626 MAPKBP1O60336 1514 aa19.8■□□□□ 0.76
SMARCA4-201ENST00000344626 KIAA2012Q0VF49 1180 aa19.8■□□□□ 0.76
SMARCA4-201ENST00000344626 NPHP4O75161 1426 aaPredicted RBP19.8■□□□□ 0.76
SMARCA4-201ENST00000344626 FAM83GA6ND36 823 aa19.8■□□□□ 0.76
SMARCA4-201ENST00000344626 METTL24Q5JXM2 366 aa19.8■□□□□ 0.76
SMARCA4-201ENST00000344626 DBF4Q9UBU7 674 aaPredicted RBP19.8■□□□□ 0.76
SMARCA4-201ENST00000344626 ADGRL2O95490 1459 aa19.79■□□□□ 0.76
SMARCA4-201ENST00000344626 A0A087WZG4 1122 aa19.79■□□□□ 0.76
SMARCA4-201ENST00000344626 TTLL12Q14166 644 aaPredicted RBP19.79■□□□□ 0.76
SMARCA4-201ENST00000344626 SART3Q15020 963 aaKnown RBP19.79■□□□□ 0.76
SMARCA4-201ENST00000344626 ANXA1P04083 346 aa19.79■□□□□ 0.76
SMARCA4-201ENST00000344626 FKBP4Q02790 459 aaKnown RBP eCLIP19.79■□□□□ 0.76
SMARCA4-201ENST00000344626 AEBP1Q8IUX7 1158 aa19.79■□□□□ 0.76
SMARCA4-201ENST00000344626 SETDB2Q96T68 719 aa19.79■□□□□ 0.76
SMARCA4-201ENST00000344626 CDCA7Q9BWT1 371 aaPredicted RBP19.79■□□□□ 0.76
SMARCA4-201ENST00000344626 PSMA5P28066 241 aa19.79■□□□□ 0.76
SMARCA4-201ENST00000344626 MAST1Q9Y2H9 1570 aa19.78■□□□□ 0.76
SMARCA4-201ENST00000344626 ATP5J2-PTCD1G3V325 749 aa19.78■□□□□ 0.76
SMARCA4-201ENST00000344626 MAGI2Q86UL8 1455 aa19.78■□□□□ 0.76
SMARCA4-201ENST00000344626 ZSCAN25Q6NSZ9 544 aa19.78■□□□□ 0.76
SMARCA4-201ENST00000344626 DDX46Q7L014 1031 aaKnown RBP19.78■□□□□ 0.76
SMARCA4-201ENST00000344626 NFATC2IPQ8NCF5 419 aa19.78■□□□□ 0.76
SMARCA4-201ENST00000344626 LRRCC1Q9C099 1032 aa19.78■□□□□ 0.76
SMARCA4-201ENST00000344626 RAI14Q9P0K7 980 aa19.78■□□□□ 0.76
SMARCA4-201ENST00000344626 RXRBP28702 533 aa19.78■□□□□ 0.76
SMARCA4-201ENST00000344626 MCTP1Q6DN14 999 aa19.77■□□□□ 0.76
SMARCA4-201ENST00000344626 IPO9Q96P70 1041 aaKnown RBP19.77■□□□□ 0.76
SMARCA4-201ENST00000344626 ST5P78524 1137 aa19.77■□□□□ 0.76
SMARCA4-201ENST00000344626 HYPKQ9NX55 129 aa19.77■□□□□ 0.76
SMARCA4-201ENST00000344626 BCAR3O75815 825 aa19.77■□□□□ 0.75
SMARCA4-201ENST00000344626 STK11IPQ8N1F8 1099 aa19.77■□□□□ 0.75
SMARCA4-201ENST00000344626 CCNL1Q9UK58 526 aaPredicted RBP19.77■□□□□ 0.75
SMARCA4-201ENST00000344626 TRPC5Q9UL62 973 aaPredicted RBP19.76■□□□□ 0.75
SMARCA4-201ENST00000344626 NPATQ14207 1427 aa19.76■□□□□ 0.75
SMARCA4-201ENST00000344626 EIF4A2Q14240 407 aaKnown RBP19.76■□□□□ 0.75
SMARCA4-201ENST00000344626 RRP12Q5JTH9 1297 aaKnown RBP19.76■□□□□ 0.75
SMARCA4-201ENST00000344626 ARHGEF10O15013 1369 aa19.76■□□□□ 0.75
SMARCA4-201ENST00000344626 SLFN5Q08AF3 891 aa19.76■□□□□ 0.75
SMARCA4-201ENST00000344626 LRP2BPQ9P2M1 347 aa19.76■□□□□ 0.75
SMARCA4-201ENST00000344626 MAP3K19Q56UN5 1328 aa19.76■□□□□ 0.75
SMARCA4-201ENST00000344626 IFIT5Q13325 482 aaKnown RBP19.76■□□□□ 0.75
SMARCA4-201ENST00000344626 MVPQ14764 893 aaKnown RBP19.75■□□□□ 0.75
SMARCA4-201ENST00000344626 PPP1R42Q7Z4L9 355 aa19.75■□□□□ 0.75
SMARCA4-201ENST00000344626 IP6K1Q92551 441 aa19.75■□□□□ 0.75
SMARCA4-201ENST00000344626 ALDH1L2Q3SY69 923 aa19.75■□□□□ 0.75
SMARCA4-201ENST00000344626 ZNF772Q68DY9 489 aaPredicted RBP19.75■□□□□ 0.75
SMARCA4-201ENST00000344626 SIRT1Q96EB6 747 aa19.75■□□□□ 0.75
SMARCA4-201ENST00000344626 GNPATO15228 680 aa19.75■□□□□ 0.75
SMARCA4-201ENST00000344626 ABCA8O94911 1581 aa19.75■□□□□ 0.75
SMARCA4-201ENST00000344626 SAFBQ15424 915 aaKnown RBP eCLIP19.75■□□□□ 0.75
SMARCA4-201ENST00000344626 PARP3Q9Y6F1 533 aa19.75■□□□□ 0.75
SMARCA4-201ENST00000344626 PIP4K2AP48426 406 aaPredicted RBP19.74■□□□□ 0.75
SMARCA4-201ENST00000344626 NACAP1Q9BZK3 213 aa19.74■□□□□ 0.75
SMARCA4-201ENST00000344626 RPAP2Q8IXW5 612 aaPredicted RBP19.74■□□□□ 0.75
SMARCA4-201ENST00000344626 POLKQ9UBT6 870 aa19.74■□□□□ 0.75
SMARCA4-201ENST00000344626 FLT4P35916 1363 aa19.73■□□□□ 0.75
SMARCA4-201ENST00000344626 CAVIN4Q5BKX8 364 aa19.73■□□□□ 0.75
SMARCA4-201ENST00000344626 GRM1Q13255 1194 aa19.73■□□□□ 0.75
SMARCA4-201ENST00000344626 IFIT1P09914 478 aaKnown RBP19.73■□□□□ 0.75
SMARCA4-201ENST00000344626 HOXC9P31274 260 aa19.72■□□□□ 0.75
SMARCA4-201ENST00000344626 F6X3S4 739 aa19.72■□□□□ 0.75
SMARCA4-201ENST00000344626 PRIM1P49642 420 aaKnown RBP19.72■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms