RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 TSPYL4Q9UJ04 414 aa12.99□□□□□ -0.33
LIMA1-201ENST00000341247 API5Q9BZZ5 524 aaKnown RBP12.99□□□□□ -0.33
LIMA1-201ENST00000341247 SLC4A2P04920 1241 aa12.99□□□□□ -0.33
LIMA1-201ENST00000341247 F6X3S4 739 aa12.98□□□□□ -0.33
LIMA1-201ENST00000341247 ARHGAP45Q92619 1136 aa12.98□□□□□ -0.33
LIMA1-201ENST00000341247 TBC1D2Q9BYX2 928 aa12.98□□□□□ -0.33
LIMA1-201ENST00000341247 CHL1O00533 1208 aa12.98□□□□□ -0.33
LIMA1-201ENST00000341247 XPCQ01831 940 aaPredicted RBP12.98□□□□□ -0.33
LIMA1-201ENST00000341247 USP35Q9P2H5 1018 aa12.98□□□□□ -0.33
LIMA1-201ENST00000341247 FMN2Q9NZ56 1722 aa12.98□□□□□ -0.33
LIMA1-201ENST00000341247 CHD2O14647 1828 aaKnown RBP12.98□□□□□ -0.33
LIMA1-201ENST00000341247 ABCC4O15439 1325 aa12.98□□□□□ -0.33
LIMA1-201ENST00000341247 BRPF1P55201 1214 aaPredicted RBP12.97□□□□□ -0.33
LIMA1-201ENST00000341247 LMOD2Q6P5Q4 547 aa12.97□□□□□ -0.33
LIMA1-201ENST00000341247 G2E3Q7L622 706 aa12.97□□□□□ -0.33
LIMA1-201ENST00000341247 ADAMTSL3P82987 1691 aa12.96□□□□□ -0.33
LIMA1-201ENST00000341247 SETD1BQ9UPS6 1966 aaKnown RBP12.96□□□□□ -0.33
LIMA1-201ENST00000341247 NWD1Q149M9 1564 aa12.96□□□□□ -0.33
LIMA1-201ENST00000341247 PIK3R4Q99570 1358 aa12.96□□□□□ -0.33
LIMA1-201ENST00000341247 TTC21AQ8NDW8 1320 aa12.96□□□□□ -0.34
LIMA1-201ENST00000341247 C16orf71Q8IYS4 520 aaPredicted RBP12.96□□□□□ -0.34
LIMA1-201ENST00000341247 FLT4P35916 1363 aa12.95□□□□□ -0.34
LIMA1-201ENST00000341247 MEIS3Q99687 375 aa12.95□□□□□ -0.34
LIMA1-201ENST00000341247 VIRMAQ69YN4 1812 aaKnown RBP12.95□□□□□ -0.34
LIMA1-201ENST00000341247 ESCO1Q5FWF5 840 aa12.95□□□□□ -0.34
LIMA1-201ENST00000341247 SMARCA5O60264 1052 aaPredicted RBP12.94□□□□□ -0.34
LIMA1-201ENST00000341247 CHMP4BQ9H444 224 aaKnown RBP12.94□□□□□ -0.34
LIMA1-201ENST00000341247 HOXC9P31274 260 aa12.94□□□□□ -0.34
LIMA1-201ENST00000341247 GCC1Q96CN9 775 aa12.94□□□□□ -0.34
LIMA1-201ENST00000341247 CRB1P82279 1406 aa12.94□□□□□ -0.34
LIMA1-201ENST00000341247 SBNO1A3KN83 1393 aa12.93□□□□□ -0.34
LIMA1-201ENST00000341247 OTUD7AQ8TE49 926 aaPredicted RBP12.93□□□□□ -0.34
LIMA1-201ENST00000341247 ORAI2Q96SN7 254 aa12.93□□□□□ -0.34
LIMA1-201ENST00000341247 RGS12O14924 1447 aa12.93□□□□□ -0.34
LIMA1-201ENST00000341247 PHF8Q9UPP1 1060 aa12.92□□□□□ -0.34
LIMA1-201ENST00000341247 MSH6P52701 1360 aa12.92□□□□□ -0.34
LIMA1-201ENST00000341247 ZNF142P52746 1687 aaPredicted RBP12.92□□□□□ -0.34
LIMA1-201ENST00000341247 ANKLE2Q86XL3 938 aa12.92□□□□□ -0.34
LIMA1-201ENST00000341247 PSME1Q06323 249 aa12.91□□□□□ -0.34
LIMA1-201ENST00000341247 FOXD4L1Q9NU39 408 aa12.91□□□□□ -0.34
LIMA1-201ENST00000341247 RGPD2P0DJD1 1756 aa12.91□□□□□ -0.34
LIMA1-201ENST00000341247 GSE1Q14687 1217 aa12.91□□□□□ -0.34
LIMA1-201ENST00000341247 GAS2L2Q8NHY3 880 aa12.91□□□□□ -0.34
LIMA1-201ENST00000341247 ARXQ96QS3 562 aa12.91□□□□□ -0.34
LIMA1-201ENST00000341247 KDRP35968 1356 aa12.91□□□□□ -0.34
LIMA1-201ENST00000341247 IGSF1Q8N6C5 1336 aa12.9□□□□□ -0.34
LIMA1-201ENST00000341247 ARHGEF10O15013 1369 aa12.9□□□□□ -0.34
LIMA1-201ENST00000341247 INTS3Q68E01 1043 aaKnown RBP12.9□□□□□ -0.34
LIMA1-201ENST00000341247 TBC1D9Q6ZT07 1266 aa12.9□□□□□ -0.34
LIMA1-201ENST00000341247 FKBP5Q13451 457 aaPredicted RBP12.9□□□□□ -0.34
LIMA1-201ENST00000341247 GNAT3A8MTJ3 354 aa12.89□□□□□ -0.35
LIMA1-201ENST00000341247 BMP2KLQ5H9B9 411 aa12.89□□□□□ -0.35
LIMA1-201ENST00000341247 STK31Q9BXU1 1019 aa12.89□□□□□ -0.35
LIMA1-201ENST00000341247 LTN1O94822 1766 aa12.89□□□□□ -0.35
LIMA1-201ENST00000341247 CEP85Q6P2H3 762 aa12.89□□□□□ -0.35
LIMA1-201ENST00000341247 IL17REQ8NFR9 667 aa12.89□□□□□ -0.35
LIMA1-201ENST00000341247 DDX17Q92841 729 aaKnown RBP12.89□□□□□ -0.35
LIMA1-201ENST00000341247 LRRC59Q96AG4 307 aaKnown RBP12.89□□□□□ -0.35
LIMA1-201ENST00000341247 EIF2S2P20042 333 aaKnown RBP12.89□□□□□ -0.35
LIMA1-201ENST00000341247 HAP1P54257 671 aaPredicted RBP12.89□□□□□ -0.35
LIMA1-201ENST00000341247 RBM42Q9BTD8 480 aaKnown RBP12.89□□□□□ -0.35
LIMA1-201ENST00000341247 ANKARQ7Z5J8 1434 aa12.88□□□□□ -0.35
LIMA1-201ENST00000341247 HSCBQ8IWL3 235 aa12.88□□□□□ -0.35
LIMA1-201ENST00000341247 GSPT1P15170 499 aaKnown RBP12.88□□□□□ -0.35
LIMA1-201ENST00000341247 RTN4Q9NQC3 1192 aaKnown RBP12.88□□□□□ -0.35
LIMA1-201ENST00000341247 PLEKHM2Q8IWE5 1019 aa12.88□□□□□ -0.35
LIMA1-201ENST00000341247 ANKRD44Q8N8A2 993 aa12.88□□□□□ -0.35
LIMA1-201ENST00000341247 DCTPP1Q9H773 170 aa12.88□□□□□ -0.35
LIMA1-201ENST00000341247 TSHZ3Q63HK5 1081 aa12.87□□□□□ -0.35
LIMA1-201ENST00000341247 ANTXR1Q9H6X2 564 aa12.87□□□□□ -0.35
LIMA1-201ENST00000341247 KIAA0232Q92628 1395 aa12.87□□□□□ -0.35
LIMA1-201ENST00000341247 NBPF6Q5VWK0 638 aa12.87□□□□□ -0.35
LIMA1-201ENST00000341247 NBPF4Q96M43 638 aa12.87□□□□□ -0.35
LIMA1-201ENST00000341247 EXOC6BQ9Y2D4 811 aa12.87□□□□□ -0.35
LIMA1-201ENST00000341247 NFAT5O94916 1531 aa12.87□□□□□ -0.35
LIMA1-201ENST00000341247 RTL1A6NKG5 1358 aa12.86□□□□□ -0.35
LIMA1-201ENST00000341247 IL27Q8NEV9 243 aa12.86□□□□□ -0.35
LIMA1-201ENST00000341247 PTPRCP08575 1304 aa12.86□□□□□ -0.35
LIMA1-201ENST00000341247 FLIIQ13045 1269 aa12.86□□□□□ -0.35
LIMA1-201ENST00000341247 LGR6Q9HBX8 967 aa12.86□□□□□ -0.35
LIMA1-201ENST00000341247 ANXA1P04083 346 aa12.85□□□□□ -0.35
LIMA1-201ENST00000341247 USP54Q70EL1 1684 aa12.85□□□□□ -0.35
LIMA1-201ENST00000341247 NPHP4O75161 1426 aaPredicted RBP12.85□□□□□ -0.35
LIMA1-201ENST00000341247 STRCP1A6NGW2 1772 aa12.85□□□□□ -0.35
LIMA1-201ENST00000341247 CD2BP2O95400 341 aaKnown RBP12.85□□□□□ -0.35
LIMA1-201ENST00000341247 RPAP2Q8IXW5 612 aaPredicted RBP12.85□□□□□ -0.35
LIMA1-201ENST00000341247 ADGRL3Q9HAR2 1447 aa12.84□□□□□ -0.35
LIMA1-201ENST00000341247 HSP90AA1P07900 732 aaKnown RBP12.84□□□□□ -0.35
LIMA1-201ENST00000341247 HSP90AB1P08238 724 aaKnown RBP12.84□□□□□ -0.35
LIMA1-201ENST00000341247 GZF1Q9H116 711 aaPredicted RBP12.84□□□□□ -0.35
LIMA1-201ENST00000341247 PHAXQ9H814 394 aaKnown RBP12.84□□□□□ -0.35
LIMA1-201ENST00000341247 AXIN2Q9Y2T1 843 aa12.84□□□□□ -0.35
LIMA1-201ENST00000341247 KCNQ3O43525 872 aa12.84□□□□□ -0.35
LIMA1-201ENST00000341247 CDC45O75419 566 aa12.84□□□□□ -0.35
LIMA1-201ENST00000341247 TAF7Q15545 349 aaPredicted RBP12.84□□□□□ -0.35
LIMA1-201ENST00000341247 CCDC30Q5VVM6 783 aa12.84□□□□□ -0.35
LIMA1-201ENST00000341247 MPRIPQ6WCQ1 1025 aa12.84□□□□□ -0.35
LIMA1-201ENST00000341247 BRPF3Q9ULD4 1205 aa12.84□□□□□ -0.35
LIMA1-201ENST00000341247 ATP10DQ9P241 1426 aa12.84□□□□□ -0.35
LIMA1-201ENST00000341247 LRRC37A3O60309 1634 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 620.4 ms