RNA–Protein interactions for RNA: ENST00000340437.8

CPSF7-201, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 1 (best) BASIC

Gene CPSF7, Length 3,695 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-201ENST00000340437 CEP85Q6P2H3 762 aa17.7■□□□□ 0.42
CPSF7-201ENST00000340437 MPNDQ8N594 471 aa17.7■□□□□ 0.42
CPSF7-201ENST00000340437 SIGLEC1Q9BZZ2 1709 aa17.7■□□□□ 0.42
CPSF7-201ENST00000340437 RNF214Q8ND24 703 aa17.69■□□□□ 0.42
CPSF7-201ENST00000340437 HECW2Q9P2P5 1572 aa17.69■□□□□ 0.42
CPSF7-201ENST00000340437 TSPYL4Q9UJ04 414 aa17.69■□□□□ 0.42
CPSF7-201ENST00000340437 ARID3AQ99856 593 aa17.69■□□□□ 0.42
CPSF7-201ENST00000340437 AK9Q5TCS8 1911 aa17.69■□□□□ 0.42
CPSF7-201ENST00000340437 DTNBO60941 627 aa17.68■□□□□ 0.42
CPSF7-201ENST00000340437 ANKRD44Q8N8A2 993 aa17.68■□□□□ 0.42
CPSF7-201ENST00000340437 MAP4K4O95819 1239 aaPredicted RBP17.67■□□□□ 0.42
CPSF7-201ENST00000340437 MSNP26038 577 aaKnown RBP17.67■□□□□ 0.42
CPSF7-201ENST00000340437 HSP90AA2PQ14568 343 aaPredicted RBP17.67■□□□□ 0.42
CPSF7-201ENST00000340437 ZFYVE9O95405 1425 aa17.67■□□□□ 0.42
CPSF7-201ENST00000340437 ANO2Q9NQ90 1003 aa17.67■□□□□ 0.42
CPSF7-201ENST00000340437 MSH6P52701 1360 aa17.67■□□□□ 0.42
CPSF7-201ENST00000340437 RIMS2Q9UQ26 1411 aa17.67■□□□□ 0.42
CPSF7-201ENST00000340437 PIK3C2BO00750 1634 aa17.66■□□□□ 0.42
CPSF7-201ENST00000340437 USP32Q8NFA0 1604 aa17.66■□□□□ 0.42
CPSF7-201ENST00000340437 FKBP5Q13451 457 aaPredicted RBP17.66■□□□□ 0.42
CPSF7-201ENST00000340437 NUCB2P80303 420 aa17.65■□□□□ 0.42
CPSF7-201ENST00000340437 LARP6Q9BRS8 491 aaKnown RBP17.65■□□□□ 0.42
CPSF7-201ENST00000340437 BRPF1P55201 1214 aaPredicted RBP17.65■□□□□ 0.42
CPSF7-201ENST00000340437 RPAP2Q8IXW5 612 aaPredicted RBP17.65■□□□□ 0.42
CPSF7-201ENST00000340437 UPF3BQ9BZI7 483 aaKnown RBP17.65■□□□□ 0.42
CPSF7-201ENST00000340437 HMMRO75330 724 aa17.64■□□□□ 0.41
CPSF7-201ENST00000340437 REC8O95072 547 aa17.64■□□□□ 0.41
CPSF7-201ENST00000340437 KLHL40Q2TBA0 621 aa17.64■□□□□ 0.41
CPSF7-201ENST00000340437 SLC26A8Q96RN1 970 aa17.64■□□□□ 0.41
CPSF7-201ENST00000340437 IL1RAPL2Q9NP60 686 aa17.64■□□□□ 0.41
CPSF7-201ENST00000340437 ZSCAN23Q3MJ62 389 aa17.63■□□□□ 0.41
CPSF7-201ENST00000340437 GDPD2Q9HCC8 539 aa17.63■□□□□ 0.41
CPSF7-201ENST00000340437 METP08581 1390 aa17.63■□□□□ 0.41
CPSF7-201ENST00000340437 NCOA3Q9Y6Q9 1424 aa17.63■□□□□ 0.41
CPSF7-201ENST00000340437 SYCE3A1L190 88 aa17.63■□□□□ 0.41
CPSF7-201ENST00000340437 ERC2O15083 957 aa17.63■□□□□ 0.41
CPSF7-201ENST00000340437 PTMSP20962 102 aa17.63■□□□□ 0.41
CPSF7-201ENST00000340437 AMPHP49418 695 aa17.63■□□□□ 0.41
CPSF7-201ENST00000340437 PRIM1P49642 420 aaKnown RBP17.63■□□□□ 0.41
CPSF7-201ENST00000340437 PTCH1Q13635 1447 aa17.63■□□□□ 0.41
CPSF7-201ENST00000340437 STK31Q9BXU1 1019 aa17.62■□□□□ 0.41
CPSF7-201ENST00000340437 ARHGEF40Q8TER5 1519 aa17.62■□□□□ 0.41
CPSF7-201ENST00000340437 MYO5BQ9ULV0 1848 aa17.62■□□□□ 0.41
CPSF7-201ENST00000340437 RBSNQ9H1K0 784 aa17.61■□□□□ 0.41
CPSF7-201ENST00000340437 UBE2Q2Q8WVN8 375 aa17.61■□□□□ 0.41
CPSF7-201ENST00000340437 RBM10P98175 930 aaKnown RBP17.61■□□□□ 0.41
CPSF7-201ENST00000340437 CCDC173Q0VFZ6 552 aa17.61■□□□□ 0.41
CPSF7-201ENST00000340437 VSIG10Q8N0Z9 540 aa17.61■□□□□ 0.41
CPSF7-201ENST00000340437 LMBRD1Q9NUN5 540 aa17.61■□□□□ 0.41
CPSF7-201ENST00000340437 NSFL1CQ9UNZ2 370 aaKnown RBP17.61■□□□□ 0.41
CPSF7-201ENST00000340437 ACEP12821 1306 aa17.61■□□□□ 0.41
CPSF7-201ENST00000340437 KIAA1211Q6ZU35 1233 aa17.6■□□□□ 0.41
CPSF7-201ENST00000340437 ALKQ9UM73 1620 aa17.6■□□□□ 0.41
CPSF7-201ENST00000340437 CHL1O00533 1208 aa17.6■□□□□ 0.41
CPSF7-201ENST00000340437 CEBPAP49715 358 aaPredicted RBP17.6■□□□□ 0.41
CPSF7-201ENST00000340437 PDE1AP54750 535 aa17.6■□□□□ 0.41
CPSF7-201ENST00000340437 MTHFSDQ2M296 383 aaKnown RBP17.6■□□□□ 0.41
CPSF7-201ENST00000340437 NGDNQ8NEJ9 315 aaKnown RBP17.6■□□□□ 0.41
CPSF7-201ENST00000340437 ISY1Q9ULR0 285 aaKnown RBP17.6■□□□□ 0.41
CPSF7-201ENST00000340437 PRR36Q9H6K5 1346 aa17.59■□□□□ 0.41
CPSF7-201ENST00000340437 EIF2S2P20042 333 aaKnown RBP17.59■□□□□ 0.41
CPSF7-201ENST00000340437 NUTM1Q86Y26 1132 aa17.59■□□□□ 0.41
CPSF7-201ENST00000340437 MED14O60244 1454 aa17.59■□□□□ 0.41
CPSF7-201ENST00000340437 RTL1A6NKG5 1358 aa17.59■□□□□ 0.41
CPSF7-201ENST00000340437 MAP2P11137 1827 aaKnown RBP17.59■□□□□ 0.41
CPSF7-201ENST00000340437 PTMAP06454 111 aaKnown RBP17.59■□□□□ 0.41
CPSF7-201ENST00000340437 HAP1P54257 671 aaPredicted RBP17.59■□□□□ 0.41
CPSF7-201ENST00000340437 R3HCC1Q9Y3T6 440 aaKnown RBP17.59■□□□□ 0.41
CPSF7-201ENST00000340437 PLCB2Q00722 1185 aa17.58■□□□□ 0.41
CPSF7-201ENST00000340437 XPCQ01831 940 aaPredicted RBP17.58■□□□□ 0.4
CPSF7-201ENST00000340437 PALD1Q9ULE6 856 aa17.58■□□□□ 0.4
CPSF7-201ENST00000340437 GNAI2P04899 355 aa17.58■□□□□ 0.4
CPSF7-201ENST00000340437 GPT2Q8TD30 523 aa17.58■□□□□ 0.4
CPSF7-201ENST00000340437 TMX3Q96JJ7 454 aa17.58■□□□□ 0.4
CPSF7-201ENST00000340437 TTC21BQ7Z4L5 1316 aa17.57■□□□□ 0.4
CPSF7-201ENST00000340437 EDC4Q6P2E9 1401 aaKnown RBP17.57■□□□□ 0.4
CPSF7-201ENST00000340437 PNMA6EA0A0J9YXQ4 647 aa17.57■□□□□ 0.4
CPSF7-201ENST00000340437 PIK3R4Q99570 1358 aa17.57■□□□□ 0.4
CPSF7-201ENST00000340437 CFAP74Q9C0B2 1584 aa17.57■□□□□ 0.4
CPSF7-201ENST00000340437 ZDHHC9Q9Y397 364 aa17.56■□□□□ 0.4
CPSF7-201ENST00000340437 DIP2CQ9Y2E4 1556 aa17.56■□□□□ 0.4
CPSF7-201ENST00000340437 ZSCAN30Q86W11 494 aa17.56■□□□□ 0.4
CPSF7-201ENST00000340437 LRRFIP2Q9Y608 721 aaKnown RBP17.56■□□□□ 0.4
CPSF7-201ENST00000340437 USHBP1Q8N6Y0 703 aa17.56■□□□□ 0.4
CPSF7-201ENST00000340437 LRRCC1Q9C099 1032 aa17.56■□□□□ 0.4
CPSF7-201ENST00000340437 CPS1P31327 1500 aa17.55■□□□□ 0.4
CPSF7-201ENST00000340437 MCCP23508 829 aa17.55■□□□□ 0.4
CPSF7-201ENST00000340437 ARHGAP31Q2M1Z3 1444 aa17.55■□□□□ 0.4
CPSF7-201ENST00000340437 DDX54Q8TDD1 881 aaKnown RBP17.54■□□□□ 0.4
CPSF7-201ENST00000340437 TMEM63CQ9P1W3 806 aa17.54■□□□□ 0.4
CPSF7-201ENST00000340437 MAP3K19Q56UN5 1328 aa17.54■□□□□ 0.4
CPSF7-201ENST00000340437 CWC22Q9HCG8 908 aaKnown RBP17.54■□□□□ 0.4
CPSF7-201ENST00000340437 MX1P20591 662 aa17.54■□□□□ 0.4
CPSF7-201ENST00000340437 UNC5CLQ8IV45 518 aa17.54■□□□□ 0.4
CPSF7-201ENST00000340437 GLIPR1L2Q4G1C9 344 aa17.53■□□□□ 0.4
CPSF7-201ENST00000340437 FLIIQ13045 1269 aa17.53■□□□□ 0.4
CPSF7-201ENST00000340437 FAM13BQ9NYF5 915 aa17.53■□□□□ 0.4
CPSF7-201ENST00000340437 PTPRCP08575 1304 aa17.52■□□□□ 0.4
CPSF7-201ENST00000340437 SURF6O75683 361 aaKnown RBP17.52■□□□□ 0.4
CPSF7-201ENST00000340437 NLRP6P59044 892 aa17.52■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms