RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 TTC22Q5TAA0 569 aa14.52□□□□□ -0.09
USP1-201ENST00000339950 CCDC85AQ96PX6 553 aaPredicted RBP14.51□□□□□ -0.09
USP1-201ENST00000339950 PREX2Q70Z35 1606 aa14.51□□□□□ -0.09
USP1-201ENST00000339950 ZMYND15Q9H091 742 aa14.51□□□□□ -0.09
USP1-201ENST00000339950 FLIIQ13045 1269 aa14.51□□□□□ -0.09
USP1-201ENST00000339950 CLTCL1P53675 1640 aa14.51□□□□□ -0.09
USP1-201ENST00000339950 HSP90B1P14625 803 aaKnown RBP14.5□□□□□ -0.09
USP1-201ENST00000339950 CEP85Q6P2H3 762 aa14.5□□□□□ -0.09
USP1-201ENST00000339950 PPIP5K1Q6PFW1 1433 aa14.5□□□□□ -0.09
USP1-201ENST00000339950 ZNF830Q96NB3 372 aaPredicted RBP14.5□□□□□ -0.09
USP1-201ENST00000339950 NUCB2P80303 420 aa14.5□□□□□ -0.09
USP1-201ENST00000339950 SKOR2Q2VWA4 1001 aaPredicted RBP14.5□□□□□ -0.09
USP1-201ENST00000339950 LRRC59Q96AG4 307 aaKnown RBP14.5□□□□□ -0.09
USP1-201ENST00000339950 IFIT2P09913 472 aaKnown RBP14.49□□□□□ -0.09
USP1-201ENST00000339950 PNMA6EA0A0J9YXQ4 647 aa14.49□□□□□ -0.09
USP1-201ENST00000339950 SPC24Q8NBT2 197 aa14.49□□□□□ -0.09
USP1-201ENST00000339950 NLRP2Q9NX02 1062 aa14.49□□□□□ -0.09
USP1-201ENST00000339950 YTHDC2Q9H6S0 1430 aaKnown RBP14.49□□□□□ -0.09
USP1-201ENST00000339950 CCDC30Q5VVM6 783 aa14.49□□□□□ -0.09
USP1-201ENST00000339950 MX1P20591 662 aa14.49□□□□□ -0.09
USP1-201ENST00000339950 CCDC8Q9H0W5 538 aaPredicted RBP14.49□□□□□ -0.09
USP1-201ENST00000339950 PA2G4Q9UQ80 394 aaKnown RBP14.49□□□□□ -0.09
USP1-201ENST00000339950 ABCC11Q96J66 1382 aa14.48□□□□□ -0.09
USP1-201ENST00000339950 ZNF530Q6P9A1 599 aaPredicted RBP14.48□□□□□ -0.09
USP1-201ENST00000339950 TTC21BQ7Z4L5 1316 aa14.48□□□□□ -0.09
USP1-201ENST00000339950 RPAP2Q8IXW5 612 aaPredicted RBP14.48□□□□□ -0.09
USP1-201ENST00000339950 EYA1Q99502 592 aa14.48□□□□□ -0.09
USP1-201ENST00000339950 ZNF518AQ6AHZ1 1483 aa14.47□□□□□ -0.09
USP1-201ENST00000339950 STK11IPQ8N1F8 1099 aa14.47□□□□□ -0.09
USP1-201ENST00000339950 MYO5CQ9NQX4 1742 aa14.47□□□□□ -0.09
USP1-201ENST00000339950 MSH6P52701 1360 aa14.47□□□□□ -0.09
USP1-201ENST00000339950 PI4KAP2A4QPH2 592 aa14.47□□□□□ -0.09
USP1-201ENST00000339950 PRIM1P49642 420 aaKnown RBP14.47□□□□□ -0.09
USP1-201ENST00000339950 PDE1AP54750 535 aa14.47□□□□□ -0.09
USP1-201ENST00000339950 C1orf141Q5JVX7 400 aa14.47□□□□□ -0.09
USP1-201ENST00000339950 PI4KAP1Q8N8J0 262 aa14.47□□□□□ -0.09
USP1-201ENST00000339950 MAP3K19Q56UN5 1328 aa14.47□□□□□ -0.09
USP1-201ENST00000339950 ANKRD44Q8N8A2 993 aa14.47□□□□□ -0.09
USP1-201ENST00000339950 SMC3Q9UQE7 1217 aa14.47□□□□□ -0.09
USP1-201ENST00000339950 PPP1R42Q7Z4L9 355 aa14.46□□□□□ -0.09
USP1-201ENST00000339950 ZNF692Q9BU19 519 aaPredicted RBP14.46□□□□□ -0.09
USP1-201ENST00000339950 DCTPP1Q9H773 170 aa14.46□□□□□ -0.09
USP1-201ENST00000339950 CHD1O14646 1710 aa14.46□□□□□ -0.09
USP1-201ENST00000339950 ABCC1P33527 1531 aa14.46□□□□□ -0.1
USP1-201ENST00000339950 CCDC83Q8IWF9 413 aa14.46□□□□□ -0.1
USP1-201ENST00000339950 SRCIN1Q9C0H9 1055 aa14.46□□□□□ -0.1
USP1-201ENST00000339950 NDUFB9Q9Y6M9 179 aa14.46□□□□□ -0.1
USP1-201ENST00000339950 FAM177BA6PVY3 158 aa14.45□□□□□ -0.1
USP1-201ENST00000339950 GNAI3P08754 354 aa14.45□□□□□ -0.1
USP1-201ENST00000339950 TMX3Q96JJ7 454 aa14.45□□□□□ -0.1
USP1-201ENST00000339950 NEUROD6Q96NK8 337 aa14.45□□□□□ -0.1
USP1-201ENST00000339950 DNAJC2Q99543 621 aaKnown RBP14.45□□□□□ -0.1
USP1-201ENST00000339950 NECAB1Q8N987 351 aa14.45□□□□□ -0.1
USP1-201ENST00000339950 BOLA2Q9H3K6 86 aa14.45□□□□□ -0.1
USP1-201ENST00000339950 PALD1Q9ULE6 856 aa14.45□□□□□ -0.1
USP1-201ENST00000339950 SLC39A6Q13433 755 aa14.45□□□□□ -0.1
USP1-201ENST00000339950 RIC3Q7Z5B4 369 aa14.45□□□□□ -0.1
USP1-201ENST00000339950 KCNQ3O43525 872 aa14.44□□□□□ -0.1
USP1-201ENST00000339950 CDK11BP21127 795 aaKnown RBP14.44□□□□□ -0.1
USP1-201ENST00000339950 CAMK4Q16566 473 aa14.44□□□□□ -0.1
USP1-201ENST00000339950 IL16Q14005 1332 aa14.44□□□□□ -0.1
USP1-201ENST00000339950 GNAT3A8MTJ3 354 aa14.44□□□□□ -0.1
USP1-201ENST00000339950 KLHDC4Q8TBB5 520 aa14.44□□□□□ -0.1
USP1-201ENST00000339950 USP26Q9BXU7 913 aa14.44□□□□□ -0.1
USP1-201ENST00000339950 IQGAP3Q86VI3 1631 aa14.44□□□□□ -0.1
USP1-201ENST00000339950 RAB3GAP1Q15042 981 aa14.44□□□□□ -0.1
USP1-201ENST00000339950 PRPF40BQ6NWY9 871 aaKnown RBP14.44□□□□□ -0.1
USP1-201ENST00000339950 UNC5CLQ8IV45 518 aa14.44□□□□□ -0.1
USP1-201ENST00000339950 E9PCH4 1651 aa14.44□□□□□ -0.1
USP1-201ENST00000339950 JAKMIP1Q96N16 626 aaKnown RBP14.43□□□□□ -0.1
USP1-201ENST00000339950 CASTP20810 708 aaKnown RBP14.43□□□□□ -0.1
USP1-201ENST00000339950 CCT4P50991 539 aaKnown RBP14.43□□□□□ -0.1
USP1-201ENST00000339950 FAM173BQ6P4H8 233 aa14.43□□□□□ -0.1
USP1-201ENST00000339950 PHF23Q9BUL5 403 aaPredicted RBP14.43□□□□□ -0.1
USP1-201ENST00000339950 CHPF2Q9P2E5 772 aa14.43□□□□□ -0.1
USP1-201ENST00000339950 KDM5AP29375 1690 aaKnown RBP14.43□□□□□ -0.1
USP1-201ENST00000339950 TRPM2O94759 1503 aa14.43□□□□□ -0.1
USP1-201ENST00000339950 AACSQ86V21 672 aa14.43□□□□□ -0.1
USP1-201ENST00000339950 CWF19L2Q2TBE0 894 aaKnown RBP14.42□□□□□ -0.1
USP1-201ENST00000339950 CLASRPQ8N2M8 674 aaKnown RBP14.42□□□□□ -0.1
USP1-201ENST00000339950 DDX11Q96FC9 970 aa14.42□□□□□ -0.1
USP1-201ENST00000339950 LGR6Q9HBX8 967 aa14.42□□□□□ -0.1
USP1-201ENST00000339950 METP08581 1390 aa14.42□□□□□ -0.1
USP1-201ENST00000339950 ZSCAN23Q3MJ62 389 aa14.42□□□□□ -0.1
USP1-201ENST00000339950 FSD1Q9BTV5 496 aa14.42□□□□□ -0.1
USP1-201ENST00000339950 NSD2O96028 1365 aa14.42□□□□□ -0.1
USP1-201ENST00000339950 BTBD11A6QL63 1104 aa14.42□□□□□ -0.1
USP1-201ENST00000339950 G3BP1Q13283 466 aaKnown RBP eCLIP14.42□□□□□ -0.1
USP1-201ENST00000339950 TFIP11Q9UBB9 837 aaKnown RBP14.42□□□□□ -0.1
USP1-201ENST00000339950 MADDQ8WXG6 1647 aa14.42□□□□□ -0.1
USP1-201ENST00000339950 POGZQ7Z3K3 1410 aa14.42□□□□□ -0.1
USP1-201ENST00000339950 LTKP29376 864 aa14.41□□□□□ -0.1
USP1-201ENST00000339950 RBM25P49756 843 aaKnown RBP14.41□□□□□ -0.1
USP1-201ENST00000339950 UNC13BO14795 1591 aa14.41□□□□□ -0.1
USP1-201ENST00000339950 LRRC2Q9BYS8 371 aa14.41□□□□□ -0.1
USP1-201ENST00000339950 KIAA2012Q0VF49 1180 aa14.41□□□□□ -0.1
USP1-201ENST00000339950 C17orf53Q8N3J3 647 aaPredicted RBP14.41□□□□□ -0.1
USP1-201ENST00000339950 USP25Q9UHP3 1055 aa14.41□□□□□ -0.1
USP1-201ENST00000339950 ZCCHC11Q5TAX3 1644 aaKnown RBP14.41□□□□□ -0.1
USP1-201ENST00000339950 NSFL1CQ9UNZ2 370 aaKnown RBP14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 107.7 ms