RNA–Protein interactions for RNA: ENST00000337354.8

SEC13-201, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SEC13, Length 1,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-201ENST00000337354 RGPD2P0DJD1 1756 aa20.52■□□□□ 0.88
SEC13-201ENST00000337354 FCHSD2O94868 740 aa20.52■□□□□ 0.88
SEC13-201ENST00000337354 PDE3BQ13370 1112 aa20.52■□□□□ 0.88
SEC13-201ENST00000337354 RGPD1P0DJD0 1748 aa20.51■□□□□ 0.87
SEC13-201ENST00000337354 ZCRB1Q8TBF4 217 aaKnown RBP20.51■□□□□ 0.87
SEC13-201ENST00000337354 PNNQ9H307 717 aaKnown RBP20.51■□□□□ 0.87
SEC13-201ENST00000337354 HMOX1P09601 288 aa20.5■□□□□ 0.87
SEC13-201ENST00000337354 AMOTQ4VCS5 1084 aa20.5■□□□□ 0.87
SEC13-201ENST00000337354 AEBP1Q8IUX7 1158 aa20.5■□□□□ 0.87
SEC13-201ENST00000337354 EP400Q96L91 3159 aa20.5■□□□□ 0.87
SEC13-201ENST00000337354 SPG7Q9UQ90 795 aa20.49■□□□□ 0.87
SEC13-201ENST00000337354 WDR43Q15061 677 aaKnown RBP eCLIP20.48■□□□□ 0.871e-6■■■□□ 17.5
SEC13-201ENST00000337354 PLEKHO1Q53GL0 409 aaPredicted RBP20.48■□□□□ 0.87
SEC13-201ENST00000337354 MRS2Q9HD23 443 aa20.48■□□□□ 0.87
SEC13-201ENST00000337354 OVOS2A0A0G2JMS6 1433 aa20.48■□□□□ 0.87
SEC13-201ENST00000337354 FAM182BQ5T319 152 aa20.47■□□□□ 0.87
SEC13-201ENST00000337354 TNS1Q9HBL0 1735 aaKnown RBP20.47■□□□□ 0.87
SEC13-201ENST00000337354 CCER2I3L3R5 266 aa20.46■□□□□ 0.87
SEC13-201ENST00000337354 RSPH6AQ9H0K4 717 aa20.46■□□□□ 0.87
SEC13-201ENST00000337354 MEGF6O75095 1541 aa20.46■□□□□ 0.87
SEC13-201ENST00000337354 CCDC184Q52MB2 194 aa20.46■□□□□ 0.87
SEC13-201ENST00000337354 NEFMP07197 916 aa20.45■□□□□ 0.86
SEC13-201ENST00000337354 PRKAR2BP31323 418 aa20.44■□□□□ 0.86
SEC13-201ENST00000337354 DDX54Q8TDD1 881 aaKnown RBP20.44■□□□□ 0.86
SEC13-201ENST00000337354 PNISRQ8TF01 805 aaKnown RBP20.44■□□□□ 0.86
SEC13-201ENST00000337354 TNS2Q63HR2 1409 aa20.43■□□□□ 0.86
SEC13-201ENST00000337354 PCDH11XQ9BZA7 1347 aa20.43■□□□□ 0.86
SEC13-201ENST00000337354 PCDH11YQ9BZA8 1340 aa20.43■□□□□ 0.86
SEC13-201ENST00000337354 SF3B2Q13435 895 aaKnown RBP20.43■□□□□ 0.86
SEC13-201ENST00000337354 MARCH10Q8NA82 808 aaPredicted RBP20.43■□□□□ 0.86
SEC13-201ENST00000337354 FAM196AQ6ZSG2 479 aa20.42■□□□□ 0.86
SEC13-201ENST00000337354 IFNL2Q8IZJ0 200 aa20.42■□□□□ 0.86
SEC13-201ENST00000337354 ADAMTS8Q9UP79 889 aa20.42■□□□□ 0.86
SEC13-201ENST00000337354 CCDC125Q86Z20 511 aa20.41■□□□□ 0.86
SEC13-201ENST00000337354 MIER1Q8N108 512 aa20.41■□□□□ 0.86
SEC13-201ENST00000337354 SBF2Q86WG5 1849 aa20.41■□□□□ 0.86
SEC13-201ENST00000337354 GAS2L2Q8NHY3 880 aa20.4■□□□□ 0.86
SEC13-201ENST00000337354 PLEKHF1Q96S99 279 aa20.4■□□□□ 0.86
SEC13-201ENST00000337354 CYP27B1O15528 508 aa20.39■□□□□ 0.85
SEC13-201ENST00000337354 HSP90AB1P08238 724 aaKnown RBP20.39■□□□□ 0.85
SEC13-201ENST00000337354 BCL9O00512 1426 aa20.38■□□□□ 0.85
SEC13-201ENST00000337354 PHKG2P15735 406 aa20.38■□□□□ 0.85
SEC13-201ENST00000337354 NKX1-1Q15270 411 aaPredicted RBP20.38■□□□□ 0.85
SEC13-201ENST00000337354 MTHFSDQ2M296 383 aaKnown RBP20.38■□□□□ 0.85
SEC13-201ENST00000337354 C1orf141Q5JVX7 400 aa20.38■□□□□ 0.85
SEC13-201ENST00000337354 PHACTR3Q96KR7 559 aa20.38■□□□□ 0.85
SEC13-201ENST00000337354 AKAP4Q5JQC9 854 aa20.37■□□□□ 0.85
SEC13-201ENST00000337354 ZNF530Q6P9A1 599 aaPredicted RBP20.37■□□□□ 0.85
SEC13-201ENST00000337354 RUNDC1Q96C34 613 aa20.36■□□□□ 0.85
SEC13-201ENST00000337354 MAPK8IP3Q9UPT6 1336 aa20.36■□□□□ 0.85
SEC13-201ENST00000337354 SHANK3Q9BYB0 1731 aa20.35■□□□□ 0.85
SEC13-201ENST00000337354 DCAF5Q96JK2 942 aa20.34■□□□□ 0.85
SEC13-201ENST00000337354 TRIM37O94972 964 aa20.34■□□□□ 0.85
SEC13-201ENST00000337354 BAG6P46379 1132 aa20.34■□□□□ 0.85
SEC13-201ENST00000337354 DEFB132Q7Z7B7 95 aa20.34■□□□□ 0.85
SEC13-201ENST00000337354 GNAT3A8MTJ3 354 aa20.32■□□□□ 0.84
SEC13-201ENST00000337354 HTATSF1O43719 755 aaKnown RBP20.32■□□□□ 0.84
SEC13-201ENST00000337354 FAM9BQ8IZU0 186 aa20.32■□□□□ 0.84
SEC13-201ENST00000337354 NHSQ6T4R5 1651 aa20.31■□□□□ 0.84
SEC13-201ENST00000337354 NFE2L2Q16236 605 aa20.31■□□□□ 0.84
SEC13-201ENST00000337354 KAT6BQ8WYB5 2073 aa20.31■□□□□ 0.84
SEC13-201ENST00000337354 DOT1LQ8TEK3 1739 aa20.3■□□□□ 0.84
SEC13-201ENST00000337354 ERVV-2B6SEH9 535 aa20.3■□□□□ 0.84
SEC13-201ENST00000337354 CCDC146Q8IYE0 955 aa20.3■□□□□ 0.84
SEC13-201ENST00000337354 BCL11BQ9C0K0 894 aaPredicted RBP20.3■□□□□ 0.84
SEC13-201ENST00000337354 MPRIPQ6WCQ1 1025 aa20.29■□□□□ 0.84
SEC13-201ENST00000337354 RTF1Q92541 710 aaKnown RBP20.29■□□□□ 0.84
SEC13-201ENST00000337354 RREB1Q92766 1687 aa20.29■□□□□ 0.84
SEC13-201ENST00000337354 PKD1L3Q7Z443 1732 aa20.28■□□□□ 0.84
SEC13-201ENST00000337354 TMPOP42166 694 aaKnown RBP20.28■□□□□ 0.84
SEC13-201ENST00000337354 PRIM1P49642 420 aaKnown RBP20.28■□□□□ 0.84
SEC13-201ENST00000337354 RGPD3A6NKT7 1758 aaPredicted RBP20.28■□□□□ 0.84
SEC13-201ENST00000337354 RGPD4Q7Z3J3 1758 aa20.28■□□□□ 0.84
SEC13-201ENST00000337354 MAP3K5Q99683 1374 aa20.27■□□□□ 0.84
SEC13-201ENST00000337354 ACSBG1Q96GR2 724 aa20.27■□□□□ 0.84
SEC13-201ENST00000337354 RNMTO43148 476 aaKnown RBP20.26■□□□□ 0.83
SEC13-201ENST00000337354 APBA3O96018 575 aa20.26■□□□□ 0.83
SEC13-201ENST00000337354 RIPK4P57078 832 aa20.26■□□□□ 0.83
SEC13-201ENST00000337354 LMOD3Q0VAK6 560 aa20.26■□□□□ 0.83
SEC13-201ENST00000337354 NUP188Q5SRE5 1749 aa20.25■□□□□ 0.83
SEC13-201ENST00000337354 APAF1O14727 1248 aa20.25■□□□□ 0.83
SEC13-201ENST00000337354 KCNQ2O43526 872 aa20.25■□□□□ 0.83
SEC13-201ENST00000337354 EN1Q05925 392 aaPredicted RBP20.25■□□□□ 0.83
SEC13-201ENST00000337354 NCBP3Q53F19 620 aaKnown RBP20.25■□□□□ 0.83
SEC13-201ENST00000337354 SYTL4Q96C24 671 aaPredicted RBP20.25■□□□□ 0.83
SEC13-201ENST00000337354 BTAF1O14981 1849 aa20.24■□□□□ 0.83
SEC13-201ENST00000337354 CABP4P57796 275 aa20.24■□□□□ 0.83
SEC13-201ENST00000337354 IL17REQ8NFR9 667 aa20.24■□□□□ 0.83
SEC13-201ENST00000337354 LGR6Q9HBX8 967 aa20.24■□□□□ 0.83
SEC13-201ENST00000337354 TMOD3Q9NYL9 352 aa20.23■□□□□ 0.83
SEC13-201ENST00000337354 NGEFQ8N5V2 710 aa20.22■□□□□ 0.83
SEC13-201ENST00000337354 KDM6AO15550 1401 aaPredicted RBP20.22■□□□□ 0.83
SEC13-201ENST00000337354 NFATC2IPQ8NCF5 419 aa20.21■□□□□ 0.83
SEC13-201ENST00000337354 SLC52A2Q9HAB3 445 aa20.21■□□□□ 0.83
SEC13-201ENST00000337354 CEMIPQ8WUJ3 1361 aa20.21■□□□□ 0.83
SEC13-201ENST00000337354 PLSCR1O15162 318 aa20.21■□□□□ 0.83
SEC13-201ENST00000337354 TEFQ10587 303 aa20.21■□□□□ 0.83
SEC13-201ENST00000337354 NEUROD2Q15784 382 aa20.21■□□□□ 0.83
SEC13-201ENST00000337354 PIGBQ92521 554 aa20.21■□□□□ 0.83
SEC13-201ENST00000337354 RRP7AQ9Y3A4 280 aaKnown RBP20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms