RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 NUP62CLQ9H1M0 184 aa12.16□□□□□ -0.46
CCDC88A-202ENST00000336838 HMOX1P09601 288 aa12.15□□□□□ -0.46
CCDC88A-202ENST00000336838 PUS7Q96PZ0 661 aaKnown RBP12.15□□□□□ -0.46
CCDC88A-202ENST00000336838 BCAR3O75815 825 aa12.15□□□□□ -0.46
CCDC88A-202ENST00000336838 ADGRL1O94910 1474 aa12.15□□□□□ -0.46
CCDC88A-202ENST00000336838 TTC21BQ7Z4L5 1316 aa12.15□□□□□ -0.46
CCDC88A-202ENST00000336838 SMC2O95347 1197 aa12.15□□□□□ -0.46
CCDC88A-202ENST00000336838 FOXD4L6Q3SYB3 417 aaPredicted RBP12.15□□□□□ -0.46
CCDC88A-202ENST00000336838 FOXD4L3Q6VB84 417 aaPredicted RBP12.15□□□□□ -0.46
CCDC88A-202ENST00000336838 ABCA5Q8WWZ7 1642 aa12.15□□□□□ -0.46
CCDC88A-202ENST00000336838 GOLGA6L9A6NEM1 432 aa12.15□□□□□ -0.46
CCDC88A-202ENST00000336838 G3V3G9 751 aa12.15□□□□□ -0.46
CCDC88A-202ENST00000336838 NBPF1Q3BBV0 1214 aa12.15□□□□□ -0.46
CCDC88A-202ENST00000336838 DCAF8Q5TAQ9 597 aa12.15□□□□□ -0.46
CCDC88A-202ENST00000336838 TMPOP42166 694 aaKnown RBP12.15□□□□□ -0.47
CCDC88A-202ENST00000336838 TUBB4BP68371 445 aa12.15□□□□□ -0.47
CCDC88A-202ENST00000336838 GGNBP2Q9H3C7 697 aa12.15□□□□□ -0.47
CCDC88A-202ENST00000336838 NPC1L1Q9UHC9 1359 aa12.14□□□□□ -0.47
CCDC88A-202ENST00000336838 GOLGA6L7A0A1B0GV03 622 aa12.14□□□□□ -0.47
CCDC88A-202ENST00000336838 ZSCAN12O43309 604 aa12.14□□□□□ -0.47
CCDC88A-202ENST00000336838 GSDMDP57764 484 aa12.14□□□□□ -0.47
CCDC88A-202ENST00000336838 NACAP1Q9BZK3 213 aa12.14□□□□□ -0.47
CCDC88A-202ENST00000336838 ZFYVE9O95405 1425 aa12.14□□□□□ -0.47
CCDC88A-202ENST00000336838 FIBPO43427 364 aa12.14□□□□□ -0.47
CCDC88A-202ENST00000336838 SPATA32Q96LK8 384 aa12.14□□□□□ -0.47
CCDC88A-202ENST00000336838 GNL3LQ9NVN8 582 aaKnown RBP12.14□□□□□ -0.47
CCDC88A-202ENST00000336838 TBC1D32Q96NH3 1257 aa12.14□□□□□ -0.47
CCDC88A-202ENST00000336838 LARP1BQ659C4 914 aaKnown RBP12.14□□□□□ -0.47
CCDC88A-202ENST00000336838 PPFIBP1Q86W92 1011 aa12.14□□□□□ -0.47
CCDC88A-202ENST00000336838 POTEB2H3BUK9 544 aa12.13□□□□□ -0.47
CCDC88A-202ENST00000336838 CEP131Q9UPN4 1083 aa12.13□□□□□ -0.47
CCDC88A-202ENST00000336838 MAP9Q49MG5 647 aa12.13□□□□□ -0.47
CCDC88A-202ENST00000336838 BLOC1S2Q6QNY1 142 aa12.13□□□□□ -0.47
CCDC88A-202ENST00000336838 TRIM34Q9BYJ4 488 aa12.13□□□□□ -0.47
CCDC88A-202ENST00000336838 SHROOM2Q13796 1616 aa12.13□□□□□ -0.47
CCDC88A-202ENST00000336838 GLRX3O76003 335 aaKnown RBP12.13□□□□□ -0.47
CCDC88A-202ENST00000336838 AEBP2Q6ZN18 517 aaPredicted RBP12.13□□□□□ -0.47
CCDC88A-202ENST00000336838 CGNQ9P2M7 1197 aaKnown RBP12.13□□□□□ -0.47
CCDC88A-202ENST00000336838 KLHL40Q2TBA0 621 aa12.13□□□□□ -0.47
CCDC88A-202ENST00000336838 C11orf95C9JLR9 678 aaPredicted RBP12.13□□□□□ -0.47
CCDC88A-202ENST00000336838 DDX11Q96FC9 970 aa12.12□□□□□ -0.47
CCDC88A-202ENST00000336838 PKNOX2Q96KN3 472 aa12.12□□□□□ -0.47
CCDC88A-202ENST00000336838 SLC4A2P04920 1241 aa12.12□□□□□ -0.47
CCDC88A-202ENST00000336838 RNF214Q8ND24 703 aa12.12□□□□□ -0.47
CCDC88A-202ENST00000336838 CCDC158Q5M9N0 1113 aa12.12□□□□□ -0.47
CCDC88A-202ENST00000336838 HDGFL1Q5TGJ6 251 aa12.12□□□□□ -0.47
CCDC88A-202ENST00000336838 KIF1BPQ96EK5 621 aa12.12□□□□□ -0.47
CCDC88A-202ENST00000336838 ADGRL2O95490 1459 aa12.12□□□□□ -0.47
CCDC88A-202ENST00000336838 H0YHG0 523 aa12.12□□□□□ -0.47
CCDC88A-202ENST00000336838 ANAPC15P60006 121 aa12.12□□□□□ -0.47
CCDC88A-202ENST00000336838 KIF18AQ8NI77 898 aa12.12□□□□□ -0.47
CCDC88A-202ENST00000336838 PRAM1Q96QH2 718 aa12.12□□□□□ -0.47
CCDC88A-202ENST00000336838 PHAXQ9H814 394 aaKnown RBP12.12□□□□□ -0.47
CCDC88A-202ENST00000336838 RRP12Q5JTH9 1297 aaKnown RBP12.11□□□□□ -0.47
CCDC88A-202ENST00000336838 SNX21Q969T3 373 aa12.11□□□□□ -0.47
CCDC88A-202ENST00000336838 URB2Q14146 1524 aaKnown RBP12.11□□□□□ -0.47
CCDC88A-202ENST00000336838 KDM5BQ9UGL1 1544 aa12.11□□□□□ -0.47
CCDC88A-202ENST00000336838 KIF6Q6ZMV9 814 aa12.11□□□□□ -0.47
CCDC88A-202ENST00000336838 CDK19Q9BWU1 502 aa12.11□□□□□ -0.47
CCDC88A-202ENST00000336838 U3KPZ7 1027 aaPredicted RBP12.11□□□□□ -0.47
CCDC88A-202ENST00000336838 PDRG1Q9NUG6 133 aa12.11□□□□□ -0.47
CCDC88A-202ENST00000336838 ME1P48163 572 aa12.11□□□□□ -0.47
CCDC88A-202ENST00000336838 DUSP27Q5VZP5 1158 aa12.11□□□□□ -0.47
CCDC88A-202ENST00000336838 PYM1Q9BRP8 204 aaKnown RBP12.11□□□□□ -0.47
CCDC88A-202ENST00000336838 COL17A1Q9UMD9 1497 aaPredicted RBP12.11□□□□□ -0.47
CCDC88A-202ENST00000336838 VPS53Q5VIR6 699 aa12.11□□□□□ -0.47
CCDC88A-202ENST00000336838 KIAA0754O94854 1291 aa12.1□□□□□ -0.47
CCDC88A-202ENST00000336838 OFD1O75665 1012 aa12.1□□□□□ -0.47
CCDC88A-202ENST00000336838 MX1P20591 662 aa12.1□□□□□ -0.47
CCDC88A-202ENST00000336838 PAXBP1Q9Y5B6 917 aa12.1□□□□□ -0.47
CCDC88A-202ENST00000336838 ARHGEF5Q12774 1597 aa12.1□□□□□ -0.47
CCDC88A-202ENST00000336838 NCBP3Q53F19 620 aaKnown RBP12.1□□□□□ -0.47
CCDC88A-202ENST00000336838 DDX19AQ9NUU7 478 aaKnown RBP12.1□□□□□ -0.47
CCDC88A-202ENST00000336838 SOS1Q07889 1333 aaPredicted RBP12.1□□□□□ -0.47
CCDC88A-202ENST00000336838 POLR3AO14802 1390 aaPredicted RBP12.1□□□□□ -0.47
CCDC88A-202ENST00000336838 SERPINC1P01008 464 aa12.1□□□□□ -0.47
CCDC88A-202ENST00000336838 NOL7Q9UMY1 257 aaKnown RBP12.1□□□□□ -0.47
CCDC88A-202ENST00000336838 PDILTQ8N807 584 aa12.1□□□□□ -0.47
CCDC88A-202ENST00000336838 SFPQP23246 707 aaKnown RBP eCLIP12.09□□□□□ -0.47
CCDC88A-202ENST00000336838 HMG20BQ9P0W2 317 aa12.09□□□□□ -0.47
CCDC88A-202ENST00000336838 EVA1CP58658 441 aa12.09□□□□□ -0.47
CCDC88A-202ENST00000336838 WASHC4Q2M389 1173 aa12.09□□□□□ -0.47
CCDC88A-202ENST00000336838 ANO10Q9NW15 660 aa12.09□□□□□ -0.47
CCDC88A-202ENST00000336838 KDM5DQ9BY66 1539 aa12.09□□□□□ -0.47
CCDC88A-202ENST00000336838 UPF3BQ9BZI7 483 aaKnown RBP12.09□□□□□ -0.47
CCDC88A-202ENST00000336838 CCDC83Q8IWF9 413 aa12.08□□□□□ -0.47
CCDC88A-202ENST00000336838 TMEM57Q8N5G2 664 aa12.08□□□□□ -0.47
CCDC88A-202ENST00000336838 NAP1L1P55209 391 aaKnown RBP12.08□□□□□ -0.48
CCDC88A-202ENST00000336838 CCDC43Q96MW1 224 aaKnown RBP12.08□□□□□ -0.48
CCDC88A-202ENST00000336838 TSR2Q969E8 191 aaKnown RBP12.08□□□□□ -0.48
CCDC88A-202ENST00000336838 PLB1Q6P1J6 1458 aa12.08□□□□□ -0.48
CCDC88A-202ENST00000336838 CLCN1P35523 988 aa12.08□□□□□ -0.48
CCDC88A-202ENST00000336838 FILIP1Q7Z7B0 1213 aa12.08□□□□□ -0.48
CCDC88A-202ENST00000336838 SLC12A5Q9H2X9 1139 aa12.08□□□□□ -0.48
CCDC88A-202ENST00000336838 CALCOCO1Q9P1Z2 691 aa12.08□□□□□ -0.48
CCDC88A-202ENST00000336838 NLRP6P59044 892 aa12.08□□□□□ -0.48
CCDC88A-202ENST00000336838 ZRSR2Q15696 482 aaKnown RBP12.08□□□□□ -0.48
CCDC88A-202ENST00000336838 SYNMO15061 1565 aa12.08□□□□□ -0.48
CCDC88A-202ENST00000336838 CCDC196A0A1B0GTZ2 297 aa12.08□□□□□ -0.48
CCDC88A-202ENST00000336838 NEUROD6Q96NK8 337 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms