RNA–Protein interactions for RNA: ENST00000333090.4

TSKU-201, Transcript of tsukushi, small leucine rich proteoglycan, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TSKU, Length 2,712 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSKU-201ENST00000333090 CASC1Q6TDU7 716 aa29.03■■■□□ 2.24
TSKU-201ENST00000333090 ANKRD44Q8N8A2 993 aa29.03■■■□□ 2.24
TSKU-201ENST00000333090 RIMS2Q9UQ26 1411 aa29.03■■■□□ 2.24
TSKU-201ENST00000333090 NME9Q86XW9 330 aa29.03■■■□□ 2.24
TSKU-201ENST00000333090 RBSNQ9H1K0 784 aa29.02■■■□□ 2.24
TSKU-201ENST00000333090 CWC22Q9HCG8 908 aaKnown RBP29.02■■■□□ 2.24
TSKU-201ENST00000333090 ALKQ9UM73 1620 aa29.02■■■□□ 2.24
TSKU-201ENST00000333090 OFD1O75665 1012 aa29.01■■■□□ 2.24
TSKU-201ENST00000333090 KIF24Q5T7B8 1368 aa29.01■■■□□ 2.23
TSKU-201ENST00000333090 PRIM1P49642 420 aaKnown RBP29■■■□□ 2.23
TSKU-201ENST00000333090 RBM27Q9P2N5 1060 aaKnown RBP29■■■□□ 2.23
TSKU-201ENST00000333090 RRS1Q15050 365 aaKnown RBP29■■■□□ 2.23
TSKU-201ENST00000333090 KRT24Q2M2I5 525 aa28.99■■■□□ 2.23
TSKU-201ENST00000333090 CEP85Q6P2H3 762 aa28.99■■■□□ 2.23
TSKU-201ENST00000333090 TXNDC2Q86VQ3 553 aa28.99■■■□□ 2.23
TSKU-201ENST00000333090 ATP10DQ9P241 1426 aa28.99■■■□□ 2.23
TSKU-201ENST00000333090 RPAP2Q8IXW5 612 aaPredicted RBP28.99■■■□□ 2.23
TSKU-201ENST00000333090 GPT2Q8TD30 523 aa28.98■■■□□ 2.23
TSKU-201ENST00000333090 PDZRN4Q6ZMN7 1036 aaPredicted RBP28.98■■■□□ 2.23
TSKU-201ENST00000333090 CHAMP1Q96JM3 812 aa28.98■■■□□ 2.23
TSKU-201ENST00000333090 ZMYND15Q9H091 742 aa28.98■■■□□ 2.23
TSKU-201ENST00000333090 ATP7BP35670 1465 aa28.97■■■□□ 2.23
TSKU-201ENST00000333090 ZDHHC9Q9Y397 364 aa28.97■■■□□ 2.23
TSKU-201ENST00000333090 REC8O95072 547 aa28.96■■■□□ 2.23
TSKU-201ENST00000333090 CDK12Q9NYV4 1490 aaPredicted RBP28.95■■■□□ 2.22
TSKU-201ENST00000333090 DLG5Q8TDM6 1919 aa28.94■■■□□ 2.22
TSKU-201ENST00000333090 FOXD4L5Q5VV16 416 aaPredicted RBP28.94■■■□□ 2.22
TSKU-201ENST00000333090 FOXD4L4Q8WXT5 416 aaPredicted RBP28.94■■■□□ 2.22
TSKU-201ENST00000333090 HS1BP3Q53T59 392 aa28.93■■■□□ 2.22
TSKU-201ENST00000333090 PKNOX2Q96KN3 472 aa28.93■■■□□ 2.22
TSKU-201ENST00000333090 MEIS3Q99687 375 aa28.93■■■□□ 2.22
TSKU-201ENST00000333090 MSH6P52701 1360 aa28.93■■■□□ 2.22
TSKU-201ENST00000333090 PDLIM2Q96JY6 352 aa28.93■■■□□ 2.22
TSKU-201ENST00000333090 NOL7Q9UMY1 257 aaKnown RBP28.93■■■□□ 2.22
TSKU-201ENST00000333090 RTL1A6NKG5 1358 aa28.92■■■□□ 2.22
TSKU-201ENST00000333090 NUTM2FA1L443 756 aa28.92■■■□□ 2.22
TSKU-201ENST00000333090 COG3Q96JB2 828 aa28.92■■■□□ 2.22
TSKU-201ENST00000333090 PDCL3Q9H2J4 239 aa28.92■■■□□ 2.22
TSKU-201ENST00000333090 ERC2O15083 957 aa28.91■■■□□ 2.22
TSKU-201ENST00000333090 RGS12O14924 1447 aa28.91■■■□□ 2.22
TSKU-201ENST00000333090 TMEM63CQ9P1W3 806 aa28.91■■■□□ 2.22
TSKU-201ENST00000333090 R3HCC1Q9Y3T6 440 aaKnown RBP28.91■■■□□ 2.22
TSKU-201ENST00000333090 A2ML1A8K2U0 1454 aa28.91■■■□□ 2.22
TSKU-201ENST00000333090 EDC4Q6P2E9 1401 aaKnown RBP28.9■■■□□ 2.22
TSKU-201ENST00000333090 SYCE3A1L190 88 aa28.9■■■□□ 2.22
TSKU-201ENST00000333090 METP08581 1390 aa28.9■■■□□ 2.22
TSKU-201ENST00000333090 PLPPR3Q6T4P5 718 aa28.9■■■□□ 2.22
TSKU-201ENST00000333090 NSFL1CQ9UNZ2 370 aaKnown RBP28.89■■■□□ 2.21
TSKU-201ENST00000333090 XPCQ01831 940 aaPredicted RBP28.88■■■□□ 2.21
TSKU-201ENST00000333090 AEBP1Q8IUX7 1158 aa28.88■■■□□ 2.21
TSKU-201ENST00000333090 EIF2AK3Q9NZJ5 1116 aaKnown RBP28.88■■■□□ 2.21
TSKU-201ENST00000333090 HAP1P54257 671 aaPredicted RBP28.87■■■□□ 2.21
TSKU-201ENST00000333090 AATKQ6ZMQ8 1374 aa28.87■■■□□ 2.21
TSKU-201ENST00000333090 DIP2BQ9P265 1576 aa28.87■■■□□ 2.21
TSKU-201ENST00000333090 CPSF1Q10570 1443 aaKnown RBP28.87■■■□□ 2.21
TSKU-201ENST00000333090 NEK4P51957 841 aa28.87■■■□□ 2.21
TSKU-201ENST00000333090 LRSAM1Q6UWE0 723 aa28.87■■■□□ 2.21
TSKU-201ENST00000333090 RBM10P98175 930 aaKnown RBP28.86■■■□□ 2.21
TSKU-201ENST00000333090 MCM10Q7L590 875 aa28.86■■■□□ 2.21
TSKU-201ENST00000333090 RIMBP3CA6NJZ7 1639 aa28.86■■■□□ 2.21
TSKU-201ENST00000333090 RIMBP3BA6NNM3 1639 aa28.86■■■□□ 2.21
TSKU-201ENST00000333090 RIMBP3Q9UFD9 1639 aa28.86■■■□□ 2.21
TSKU-201ENST00000333090 ZNF500O60304 480 aaPredicted RBP28.85■■■□□ 2.21
TSKU-201ENST00000333090 SULT6B1Q6IMI4 303 aa28.85■■■□□ 2.21
TSKU-201ENST00000333090 TMX3Q96JJ7 454 aa28.84■■■□□ 2.21
TSKU-201ENST00000333090 WASLO00401 505 aaPredicted RBP28.83■■■□□ 2.21
TSKU-201ENST00000333090 PTPRCP08575 1304 aa28.83■■■□□ 2.21
TSKU-201ENST00000333090 CHL1O00533 1208 aa28.83■■■□□ 2.21
TSKU-201ENST00000333090 HMMRO75330 724 aa28.83■■■□□ 2.21
TSKU-201ENST00000333090 TERF1P54274 439 aa28.83■■■□□ 2.21
TSKU-201ENST00000333090 RNF214Q8ND24 703 aa28.83■■■□□ 2.21
TSKU-201ENST00000333090 ZKSCAN5Q9Y2L8 839 aa28.83■■■□□ 2.21
TSKU-201ENST00000333090 PDE1AP54750 535 aa28.82■■■□□ 2.2
TSKU-201ENST00000333090 SLC4A2P04920 1241 aa28.82■■■□□ 2.2
TSKU-201ENST00000333090 TSHZ3Q63HK5 1081 aa28.81■■■□□ 2.2
TSKU-201ENST00000333090 SLC4A10Q6U841 1118 aa28.81■■■□□ 2.2
TSKU-201ENST00000333090 ESF1Q9H501 851 aaKnown RBP28.81■■■□□ 2.2
TSKU-201ENST00000333090 NOL8Q76FK4 1167 aaKnown RBP28.8■■■□□ 2.2
TSKU-201ENST00000333090 FAM13BQ9NYF5 915 aa28.79■■■□□ 2.2
TSKU-201ENST00000333090 MBD3O95983 291 aa28.79■■■□□ 2.2
TSKU-201ENST00000333090 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.79■■■□□ 2.2
TSKU-201ENST00000333090 NUDT16Q96DE0 195 aaKnown RBP28.79■■■□□ 2.2
TSKU-201ENST00000333090 CPS1P31327 1500 aa28.78■■■□□ 2.2
TSKU-201ENST00000333090 DLC1Q96QB1 1528 aa28.78■■■□□ 2.2
TSKU-201ENST00000333090 SOX12O15370 315 aa28.78■■■□□ 2.2
TSKU-201ENST00000333090 EIF4A2Q14240 407 aaKnown RBP28.78■■■□□ 2.2
TSKU-201ENST00000333090 F6X3S4 739 aa28.77■■■□□ 2.2
TSKU-201ENST00000333090 OSBPL3Q9H4L5 887 aa28.77■■■□□ 2.2
TSKU-201ENST00000333090 EXOC6BQ9Y2D4 811 aa28.77■■■□□ 2.2
TSKU-201ENST00000333090 KIAA0232Q92628 1395 aa28.77■■■□□ 2.2
TSKU-201ENST00000333090 MIS18AQ9NYP9 233 aa28.76■■■□□ 2.19
TSKU-201ENST00000333090 CCDC39Q9UFE4 941 aa28.76■■■□□ 2.19
TSKU-201ENST00000333090 UQCRHLA0A096LP55 91 aa28.75■■■□□ 2.19
TSKU-201ENST00000333090 BRD1O95696 1058 aa28.75■■■□□ 2.19
TSKU-201ENST00000333090 UQCRHP07919 91 aa28.75■■■□□ 2.19
TSKU-201ENST00000333090 PALD1Q9ULE6 856 aa28.74■■■□□ 2.19
TSKU-201ENST00000333090 CCDC61Q9Y6R9 512 aa28.74■■■□□ 2.19
TSKU-201ENST00000333090 MCM2P49736 904 aa28.74■■■□□ 2.19
TSKU-201ENST00000333090 FOXD4L6Q3SYB3 417 aaPredicted RBP28.74■■■□□ 2.19
TSKU-201ENST00000333090 FOXD4L3Q6VB84 417 aaPredicted RBP28.74■■■□□ 2.19
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms