RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 URB2Q14146 1524 aaKnown RBP12.12□□□□□ -0.47
CHD3-201ENST00000330494 JAKMIP1Q96N16 626 aaKnown RBP12.12□□□□□ -0.47
CHD3-201ENST00000330494 IL27Q8NEV9 243 aa12.12□□□□□ -0.47
CHD3-201ENST00000330494 TDO2P48775 406 aa12.11□□□□□ -0.47
CHD3-201ENST00000330494 ZHX3Q9H4I2 956 aa12.11□□□□□ -0.47
CHD3-201ENST00000330494 CCAR1Q8IX12 1150 aaKnown RBP12.11□□□□□ -0.47
CHD3-201ENST00000330494 NOS1P29475 1434 aa12.11□□□□□ -0.47
CHD3-201ENST00000330494 TRIM5Q9C035 493 aa12.11□□□□□ -0.47
CHD3-201ENST00000330494 LRP2BPQ9P2M1 347 aa12.11□□□□□ -0.47
CHD3-201ENST00000330494 KINO60870 393 aaKnown RBP12.11□□□□□ -0.47
CHD3-201ENST00000330494 STK38Q15208 465 aa12.11□□□□□ -0.47
CHD3-201ENST00000330494 RABEP1Q15276 862 aa12.11□□□□□ -0.47
CHD3-201ENST00000330494 CT47A1Q5JQC4 288 aaPredicted RBP12.11□□□□□ -0.47
CHD3-201ENST00000330494 TMOD3Q9NYL9 352 aa12.11□□□□□ -0.47
CHD3-201ENST00000330494 JARID2Q92833 1246 aaPredicted RBP12.11□□□□□ -0.47
CHD3-201ENST00000330494 CFAP65Q6ZU64 1925 aaKnown RBP12.1□□□□□ -0.47
CHD3-201ENST00000330494 FAM43AQ8N2R8 423 aa12.1□□□□□ -0.47
CHD3-201ENST00000330494 SSH1Q8WYL5 1049 aa12.1□□□□□ -0.47
CHD3-201ENST00000330494 CEP126Q9P2H0 1117 aa12.1□□□□□ -0.47
CHD3-201ENST00000330494 ZNF219Q9P2Y4 722 aaPredicted RBP12.1□□□□□ -0.47
CHD3-201ENST00000330494 METTL24Q5JXM2 366 aa12.1□□□□□ -0.47
CHD3-201ENST00000330494 BOLA2Q9H3K6 86 aa12.1□□□□□ -0.47
CHD3-201ENST00000330494 FAM83GA6ND36 823 aa12.1□□□□□ -0.47
CHD3-201ENST00000330494 DDX11Q96FC9 970 aa12.1□□□□□ -0.47
CHD3-201ENST00000330494 LARP6Q9BRS8 491 aaKnown RBP12.09□□□□□ -0.47
CHD3-201ENST00000330494 KRT18P05783 430 aaKnown RBP12.09□□□□□ -0.47
CHD3-201ENST00000330494 NAT10Q9H0A0 1025 aaKnown RBP12.09□□□□□ -0.47
CHD3-201ENST00000330494 SKIDA1Q1XH10 827 aa12.09□□□□□ -0.47
CHD3-201ENST00000330494 OFD1O75665 1012 aa12.09□□□□□ -0.47
CHD3-201ENST00000330494 STARD3NLO95772 234 aa12.09□□□□□ -0.47
CHD3-201ENST00000330494 ME1P48163 572 aa12.09□□□□□ -0.47
CHD3-201ENST00000330494 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.09□□□□□ -0.47
CHD3-201ENST00000330494 KCNH5Q8NCM2 988 aa12.09□□□□□ -0.47
CHD3-201ENST00000330494 FANCAO15360 1455 aa12.09□□□□□ -0.47
CHD3-201ENST00000330494 BACH2Q9BYV9 841 aa12.09□□□□□ -0.47
CHD3-201ENST00000330494 WASLO00401 505 aaPredicted RBP12.08□□□□□ -0.48
CHD3-201ENST00000330494 GPTP24298 496 aa12.08□□□□□ -0.48
CHD3-201ENST00000330494 CHRNA2Q15822 529 aa12.08□□□□□ -0.48
CHD3-201ENST00000330494 TSPY26PQ9H489 355 aa12.08□□□□□ -0.48
CHD3-201ENST00000330494 K7ELQ4 463 aaPredicted RBP12.08□□□□□ -0.48
CHD3-201ENST00000330494 TAF7Q15545 349 aaPredicted RBP12.08□□□□□ -0.48
CHD3-201ENST00000330494 TEX35Q5T0J7 233 aa12.08□□□□□ -0.48
CHD3-201ENST00000330494 NACAP1Q9BZK3 213 aa12.08□□□□□ -0.48
CHD3-201ENST00000330494 PDRG1Q9NUG6 133 aa12.08□□□□□ -0.48
CHD3-201ENST00000330494 PHF8Q9UPP1 1060 aa12.08□□□□□ -0.48
CHD3-201ENST00000330494 CCDC8Q9H0W5 538 aaPredicted RBP12.08□□□□□ -0.48
CHD3-201ENST00000330494 R3HCC1Q9Y3T6 440 aaKnown RBP12.08□□□□□ -0.48
CHD3-201ENST00000330494 MPHOSPH10O00566 681 aaKnown RBP12.08□□□□□ -0.48
CHD3-201ENST00000330494 CASTP20810 708 aaKnown RBP12.08□□□□□ -0.48
CHD3-201ENST00000330494 LARP1BQ659C4 914 aaKnown RBP12.08□□□□□ -0.48
CHD3-201ENST00000330494 ODF2Q5BJF6 829 aa12.08□□□□□ -0.48
CHD3-201ENST00000330494 IGHMBP2P38935 993 aaKnown RBP12.07□□□□□ -0.48
CHD3-201ENST00000330494 BLOC1S2Q6QNY1 142 aa12.07□□□□□ -0.48
CHD3-201ENST00000330494 SLC4A8Q2Y0W8 1093 aa12.07□□□□□ -0.48
CHD3-201ENST00000330494 DISP3Q9P2K9 1392 aa12.07□□□□□ -0.48
CHD3-201ENST00000330494 ZNF396Q96N95 335 aaPredicted RBP12.07□□□□□ -0.48
CHD3-201ENST00000330494 USP5P45974 858 aa12.07□□□□□ -0.48
CHD3-201ENST00000330494 BRPF3Q9ULD4 1205 aa12.06□□□□□ -0.48
CHD3-201ENST00000330494 MINDY4BA8MYZ0 360 aa12.06□□□□□ -0.48
CHD3-201ENST00000330494 KRT28Q7Z3Y7 464 aa12.06□□□□□ -0.48
CHD3-201ENST00000330494 LRRFIP2Q9Y608 721 aaKnown RBP12.06□□□□□ -0.48
CHD3-201ENST00000330494 GPS2Q13227 327 aa12.06□□□□□ -0.48
CHD3-201ENST00000330494 RARSP54136 660 aaKnown RBP12.06□□□□□ -0.48
CHD3-201ENST00000330494 IBSPP21815 317 aaPredicted RBP12.06□□□□□ -0.48
CHD3-201ENST00000330494 MNS1Q8NEH6 495 aa12.06□□□□□ -0.48
CHD3-201ENST00000330494 ZPR1O75312 459 aa12.06□□□□□ -0.48
CHD3-201ENST00000330494 ANXA1P04083 346 aa12.06□□□□□ -0.48
CHD3-201ENST00000330494 MCM2P49736 904 aa12.06□□□□□ -0.48
CHD3-201ENST00000330494 PDCP20941 246 aa12.05□□□□□ -0.48
CHD3-201ENST00000330494 TXLNAP40222 546 aa12.05□□□□□ -0.48
CHD3-201ENST00000330494 CT47B1P0C2W7 299 aaPredicted RBP12.05□□□□□ -0.48
CHD3-201ENST00000330494 TSHZ3Q63HK5 1081 aa12.05□□□□□ -0.48
CHD3-201ENST00000330494 CAGE1Q8TC20 777 aa12.05□□□□□ -0.48
CHD3-201ENST00000330494 ZBTB3Q9H5J0 574 aa12.05□□□□□ -0.48
CHD3-201ENST00000330494 TRIM22Q8IYM9 498 aa12.05□□□□□ -0.48
CHD3-201ENST00000330494 ATP5J2-PTCD1G3V325 749 aa12.05□□□□□ -0.48
CHD3-201ENST00000330494 ANKIB1Q9P2G1 1089 aa12.05□□□□□ -0.48
CHD3-201ENST00000330494 MAGEC2Q9UBF1 373 aaPredicted RBP12.05□□□□□ -0.48
CHD3-201ENST00000330494 UBAC1Q9BSL1 405 aa12.05□□□□□ -0.48
CHD3-201ENST00000330494 HSP90AB2PQ58FF8 381 aa12.04□□□□□ -0.48
CHD3-201ENST00000330494 CCDC82Q8N4S0 544 aa12.04□□□□□ -0.48
CHD3-201ENST00000330494 TNMDQ9H2S6 317 aa12.04□□□□□ -0.48
CHD3-201ENST00000330494 NGLY1Q96IV0 654 aa12.04□□□□□ -0.48
CHD3-201ENST00000330494 SSBP05455 408 aaKnown RBP eCLIP12.04□□□□□ -0.48
CHD3-201ENST00000330494 RBM10P98175 930 aaKnown RBP12.04□□□□□ -0.48
CHD3-201ENST00000330494 AIDAQ96BJ3 306 aa12.04□□□□□ -0.48
CHD3-201ENST00000330494 UPF3BQ9BZI7 483 aaKnown RBP12.04□□□□□ -0.48
CHD3-201ENST00000330494 GUCY1B3Q02153 619 aa12.04□□□□□ -0.48
CHD3-201ENST00000330494 ZSCAN25Q6NSZ9 544 aa12.04□□□□□ -0.48
CHD3-201ENST00000330494 NCOA1Q15788 1441 aa12.04□□□□□ -0.48
CHD3-201ENST00000330494 SERPINC1P01008 464 aa12.03□□□□□ -0.48
CHD3-201ENST00000330494 MRE11P49959 708 aa12.03□□□□□ -0.48
CHD3-201ENST00000330494 ANKRD1Q15327 319 aa12.03□□□□□ -0.48
CHD3-201ENST00000330494 NOM1Q5C9Z4 860 aaKnown RBP12.03□□□□□ -0.48
CHD3-201ENST00000330494 CCDC83Q8IWF9 413 aa12.03□□□□□ -0.48
CHD3-201ENST00000330494 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.03□□□□□ -0.483e-7■■■■■ 116.6
CHD3-201ENST00000330494 PRPF40BQ6NWY9 871 aaKnown RBP12.03□□□□□ -0.48
CHD3-201ENST00000330494 FAM177A1Q8N128 213 aaPredicted RBP12.03□□□□□ -0.48
CHD3-201ENST00000330494 CCDC39Q9UFE4 941 aa12.03□□□□□ -0.48
CHD3-201ENST00000330494 MAP3K2Q9Y2U5 619 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms