RNA–Protein interactions for RNA: ENST00000307017.8

USP38-201, Transcript of ubiquitin specific peptidase 38, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP38, Length 7,009 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP38-201ENST00000307017 URI1O94763 535 aaPredicted RBP14.89□□□□□ -0.03
USP38-201ENST00000307017 SSFA2P28290 1259 aa14.89□□□□□ -0.03
USP38-201ENST00000307017 MMRN2Q9H8L6 949 aa14.89□□□□□ -0.03
USP38-201ENST00000307017 ESPNB1AK53 854 aa14.88□□□□□ -0.03
USP38-201ENST00000307017 JARID2Q92833 1246 aaPredicted RBP14.88□□□□□ -0.03
USP38-201ENST00000307017 NUP62CLQ9H1M0 184 aa14.88□□□□□ -0.03
USP38-201ENST00000307017 FAM170AA1A519 330 aa14.88□□□□□ -0.03
USP38-201ENST00000307017 ERLIN2O94905 339 aa14.88□□□□□ -0.03
USP38-201ENST00000307017 CCDC30Q5VVM6 783 aa14.88□□□□□ -0.03
USP38-201ENST00000307017 CHD1LQ86WJ1 897 aa14.88□□□□□ -0.03
USP38-201ENST00000307017 MACROD2A1Z1Q3 448 aa14.88□□□□□ -0.03
USP38-201ENST00000307017 CTNNBL1Q8WYA6 563 aaPredicted RBP14.88□□□□□ -0.03
USP38-201ENST00000307017 EIF5P55010 431 aaKnown RBP14.88□□□□□ -0.03
USP38-201ENST00000307017 DYDC1Q8WWB3 177 aa14.88□□□□□ -0.03
USP38-201ENST00000307017 CCT2P78371 535 aaKnown RBP14.87□□□□□ -0.03
USP38-201ENST00000307017 TMCO3Q6UWJ1 677 aa14.87□□□□□ -0.03
USP38-201ENST00000307017 GIMAP7Q8NHV1 300 aa14.87□□□□□ -0.03
USP38-201ENST00000307017 ZNF219Q9P2Y4 722 aaPredicted RBP14.87□□□□□ -0.03
USP38-201ENST00000307017 TXNDC2Q86VQ3 553 aa14.87□□□□□ -0.03
USP38-201ENST00000307017 MROH2BQ7Z745 1585 aa14.87□□□□□ -0.03
USP38-201ENST00000307017 CFAP70Q5T0N1 1121 aa14.87□□□□□ -0.03
USP38-201ENST00000307017 USP25Q9UHP3 1055 aa14.87□□□□□ -0.03
USP38-201ENST00000307017 CCDC158Q5M9N0 1113 aa14.87□□□□□ -0.03
USP38-201ENST00000307017 SLC12A5Q9H2X9 1139 aa14.87□□□□□ -0.03
USP38-201ENST00000307017 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP14.87□□□□□ -0.03
USP38-201ENST00000307017 VGFO15240 615 aaPredicted RBP14.86□□□□□ -0.03
USP38-201ENST00000307017 USHBP1Q8N6Y0 703 aa14.86□□□□□ -0.03
USP38-201ENST00000307017 SPTY2D1Q68D10 685 aaPredicted RBP14.86□□□□□ -0.03
USP38-201ENST00000307017 NF2P35240 595 aa14.86□□□□□ -0.03
USP38-201ENST00000307017 MAP2K1Q02750 393 aaPredicted RBP14.86□□□□□ -0.03
USP38-201ENST00000307017 MCM4P33991 863 aa14.86□□□□□ -0.03
USP38-201ENST00000307017 TDO2P48775 406 aa14.86□□□□□ -0.03
USP38-201ENST00000307017 RABEP1Q15276 862 aa14.86□□□□□ -0.03
USP38-201ENST00000307017 IDH1O75874 414 aaKnown RBP14.85□□□□□ -0.03
USP38-201ENST00000307017 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.85□□□□□ -0.03
USP38-201ENST00000307017 V9GYY5 206 aaPredicted RBP14.85□□□□□ -0.03
USP38-201ENST00000307017 MBD3O95983 291 aa14.85□□□□□ -0.03
USP38-201ENST00000307017 HSP90AB4PQ58FF6 505 aa14.85□□□□□ -0.03
USP38-201ENST00000307017 GBP2P32456 591 aaPredicted RBP14.85□□□□□ -0.03
USP38-201ENST00000307017 EPB41L2O43491 1005 aaKnown RBP14.85□□□□□ -0.03
USP38-201ENST00000307017 HDGFL1Q5TGJ6 251 aa14.85□□□□□ -0.03
USP38-201ENST00000307017 TMCO5BA8MYB1 307 aa14.84□□□□□ -0.03
USP38-201ENST00000307017 MINDY4BA8MYZ0 360 aa14.84□□□□□ -0.03
USP38-201ENST00000307017 KRT85P78386 507 aa14.84□□□□□ -0.03
USP38-201ENST00000307017 SRGAP3O43295 1099 aa14.84□□□□□ -0.03
USP38-201ENST00000307017 PRPF40BQ6NWY9 871 aaKnown RBP14.84□□□□□ -0.03
USP38-201ENST00000307017 TMEM57Q8N5G2 664 aa14.84□□□□□ -0.03
USP38-201ENST00000307017 TFIP11Q9UBB9 837 aaKnown RBP14.84□□□□□ -0.03
USP38-201ENST00000307017 ZNF76P36508 570 aa14.84□□□□□ -0.03
USP38-201ENST00000307017 WWC2Q6AWC2 1192 aa14.84□□□□□ -0.03
USP38-201ENST00000307017 PRAM1Q96QH2 718 aa14.83□□□□□ -0.03
USP38-201ENST00000307017 BOLA2Q9H3K6 86 aa14.83□□□□□ -0.03
USP38-201ENST00000307017 SLTMQ9NWH9 1034 aaKnown RBP eCLIP14.83□□□□□ -0.04
USP38-201ENST00000307017 ABCF2Q9UG63 623 aa14.83□□□□□ -0.04
USP38-201ENST00000307017 RAD54L2Q9Y4B4 1467 aa14.83□□□□□ -0.04
USP38-201ENST00000307017 CEP57L1Q8IYX8 460 aa14.83□□□□□ -0.04
USP38-201ENST00000307017 NEBLO76041 1014 aa14.82□□□□□ -0.04
USP38-201ENST00000307017 MCM10Q7L590 875 aa14.82□□□□□ -0.04
USP38-201ENST00000307017 ATF3P18847 181 aa14.82□□□□□ -0.04
USP38-201ENST00000307017 TMCO4Q5TGY1 634 aa14.82□□□□□ -0.04
USP38-201ENST00000307017 CLIP2Q9UDT6 1046 aa14.82□□□□□ -0.04
USP38-201ENST00000307017 F6X3S4 739 aa14.82□□□□□ -0.04
USP38-201ENST00000307017 WDR78Q5VTH9 848 aa14.82□□□□□ -0.04
USP38-201ENST00000307017 MTERF4Q7Z6M4 381 aaKnown RBP14.82□□□□□ -0.04
USP38-201ENST00000307017 CABP4P57796 275 aa14.81□□□□□ -0.04
USP38-201ENST00000307017 ARHGAP29Q52LW3 1261 aa14.81□□□□□ -0.04
USP38-201ENST00000307017 WDR33Q9C0J8 1336 aaKnown RBP14.81□□□□□ -0.04
USP38-201ENST00000307017 BLOC1S2Q6QNY1 142 aa14.81□□□□□ -0.04
USP38-201ENST00000307017 DTNBO60941 627 aa14.81□□□□□ -0.04
USP38-201ENST00000307017 RSPH4AQ5TD94 716 aa14.81□□□□□ -0.04
USP38-201ENST00000307017 UBXN4Q92575 508 aa14.81□□□□□ -0.04
USP38-201ENST00000307017 EIF3JO75822 258 aaKnown RBP14.81□□□□□ -0.04
USP38-201ENST00000307017 CCDC96Q2M329 555 aa14.81□□□□□ -0.04
USP38-201ENST00000307017 CCP110O43303 1012 aa14.8□□□□□ -0.04
USP38-201ENST00000307017 PTPN14Q15678 1187 aa14.8□□□□□ -0.04
USP38-201ENST00000307017 CCDC8Q9H0W5 538 aaPredicted RBP14.8□□□□□ -0.04
USP38-201ENST00000307017 PRPF4BQ13523 1007 aaKnown RBP14.8□□□□□ -0.04
USP38-201ENST00000307017 PIP4K2BP78356 416 aa14.8□□□□□ -0.04
USP38-201ENST00000307017 ZRSR2Q15696 482 aaKnown RBP14.8□□□□□ -0.04
USP38-201ENST00000307017 DRC1Q96MC2 740 aa14.8□□□□□ -0.04
USP38-201ENST00000307017 HMGN5P82970 282 aaKnown RBP14.79□□□□□ -0.04
USP38-201ENST00000307017 WWC3Q9ULE0 1092 aa14.79□□□□□ -0.04
USP38-201ENST00000307017 STIM1Q13586 685 aa14.79□□□□□ -0.04
USP38-201ENST00000307017 SOGA3Q5TF21 947 aa14.79□□□□□ -0.04
USP38-201ENST00000307017 LMAN1P49257 510 aa14.79□□□□□ -0.04
USP38-201ENST00000307017 JPH4Q96JJ6 628 aa14.79□□□□□ -0.04
USP38-201ENST00000307017 SPG7Q9UQ90 795 aa14.79□□□□□ -0.04
USP38-201ENST00000307017 TRIM22Q8IYM9 498 aa14.79□□□□□ -0.04
USP38-201ENST00000307017 MAP3K11Q16584 847 aa14.79□□□□□ -0.04
USP38-201ENST00000307017 KIF4BQ2VIQ3 1234 aa14.79□□□□□ -0.04
USP38-201ENST00000307017 TMC6Q7Z403 805 aa14.79□□□□□ -0.04
USP38-201ENST00000307017 NUP88Q99567 741 aaPredicted RBP14.79□□□□□ -0.04
USP38-201ENST00000307017 CABP1Q9NZU7 370 aa14.79□□□□□ -0.04
USP38-201ENST00000307017 ERLIN1O75477 346 aa14.78□□□□□ -0.04
USP38-201ENST00000307017 SF3A3Q12874 501 aaKnown RBP eCLIP14.78□□□□□ -0.04
USP38-201ENST00000307017 POLR3DP05423 398 aaPredicted RBP14.78□□□□□ -0.04
USP38-201ENST00000307017 SLC3A2P08195 630 aaKnown RBP14.78□□□□□ -0.04
USP38-201ENST00000307017 LRP2BPQ9P2M1 347 aa14.78□□□□□ -0.04
USP38-201ENST00000307017 BTBD11A6QL63 1104 aa14.78□□□□□ -0.04
USP38-201ENST00000307017 IFFO1Q0D2I5 559 aa14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms