RNA–Protein interactions for RNA: ENST00000301475.1

ZNF558-201, Transcript of zinc finger protein 558, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ZNF558, Length 3,014 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF558-201ENST00000301475 ATP10DQ9P241 1426 aa13.29□□□□□ -0.28
ZNF558-201ENST00000301475 UTP14CQ5TAP6 766 aaKnown RBP13.29□□□□□ -0.28
ZNF558-201ENST00000301475 ZNF830Q96NB3 372 aaPredicted RBP13.29□□□□□ -0.28
ZNF558-201ENST00000301475 TSPY26PQ9H489 355 aa13.29□□□□□ -0.28
ZNF558-201ENST00000301475 A0A0U1RQG5 324 aaPredicted RBP13.29□□□□□ -0.28
ZNF558-201ENST00000301475 PHACTR3Q96KR7 559 aa13.29□□□□□ -0.28
ZNF558-201ENST00000301475 LMTK2Q8IWU2 1503 aa13.29□□□□□ -0.28
ZNF558-201ENST00000301475 NEO1Q92859 1461 aa13.28□□□□□ -0.28
ZNF558-201ENST00000301475 CD163L1Q9NR16 1453 aa13.28□□□□□ -0.28
ZNF558-201ENST00000301475 NPATQ14207 1427 aa13.28□□□□□ -0.28
ZNF558-201ENST00000301475 C17orf53Q8N3J3 647 aaPredicted RBP13.28□□□□□ -0.28
ZNF558-201ENST00000301475 MBIPQ9NS73 344 aa13.28□□□□□ -0.28
ZNF558-201ENST00000301475 FAM177BA6PVY3 158 aa13.28□□□□□ -0.28
ZNF558-201ENST00000301475 SMARCA5O60264 1052 aaPredicted RBP13.28□□□□□ -0.28
ZNF558-201ENST00000301475 FCHSD2O94868 740 aa13.28□□□□□ -0.28
ZNF558-201ENST00000301475 BRD1O95696 1058 aa13.28□□□□□ -0.28
ZNF558-201ENST00000301475 DNTTIP2Q5QJE6 756 aaKnown RBP13.28□□□□□ -0.28
ZNF558-201ENST00000301475 CFAP44Q96MT7 982 aa13.28□□□□□ -0.28
ZNF558-201ENST00000301475 MLH3Q9UHC1 1453 aa13.27□□□□□ -0.28
ZNF558-201ENST00000301475 TMX3Q96JJ7 454 aa13.27□□□□□ -0.28
ZNF558-201ENST00000301475 PIBF1Q8WXW3 757 aa13.27□□□□□ -0.29
ZNF558-201ENST00000301475 FBLN1P23142 703 aa13.26□□□□□ -0.29
ZNF558-201ENST00000301475 TCHHQ07283 1943 aa13.26□□□□□ -0.29
ZNF558-201ENST00000301475 HECW2Q9P2P5 1572 aa13.26□□□□□ -0.29
ZNF558-201ENST00000301475 APBB1O00213 710 aa13.26□□□□□ -0.29
ZNF558-201ENST00000301475 GTF2F1P35269 517 aaKnown RBP eCLIP13.26□□□□□ -0.29
ZNF558-201ENST00000301475 SRPK2P78362 688 aaKnown RBP13.26□□□□□ -0.29
ZNF558-201ENST00000301475 TWISTNBQ3B726 338 aaPredicted RBP13.26□□□□□ -0.29
ZNF558-201ENST00000301475 C8orf58Q8NAV2 365 aa13.26□□□□□ -0.29
ZNF558-201ENST00000301475 HMOX1P09601 288 aa13.26□□□□□ -0.29
ZNF558-201ENST00000301475 NFE2L2Q16236 605 aa13.26□□□□□ -0.29
ZNF558-201ENST00000301475 PRIMPOLQ96LW4 560 aa13.26□□□□□ -0.29
ZNF558-201ENST00000301475 GDPD2Q9HCC8 539 aa13.26□□□□□ -0.29
ZNF558-201ENST00000301475 GADD45BO75293 160 aaPredicted RBP13.25□□□□□ -0.29
ZNF558-201ENST00000301475 CBX1P83916 185 aa13.25□□□□□ -0.29
ZNF558-201ENST00000301475 ATP2B3Q16720 1220 aa13.25□□□□□ -0.29
ZNF558-201ENST00000301475 TTC12Q9H892 705 aaPredicted RBP13.25□□□□□ -0.29
ZNF558-201ENST00000301475 USP25Q9UHP3 1055 aa13.25□□□□□ -0.29
ZNF558-201ENST00000301475 REC8O95072 547 aa13.25□□□□□ -0.29
ZNF558-201ENST00000301475 ZNF853P0CG23 659 aa13.25□□□□□ -0.29
ZNF558-201ENST00000301475 NEK4P51957 841 aa13.25□□□□□ -0.29
ZNF558-201ENST00000301475 NOLC1Q14978 699 aaKnown RBP eCLIP13.25□□□□□ -0.29
ZNF558-201ENST00000301475 FOXD4L6Q3SYB3 417 aaPredicted RBP13.25□□□□□ -0.29
ZNF558-201ENST00000301475 FOXD4L3Q6VB84 417 aaPredicted RBP13.25□□□□□ -0.29
ZNF558-201ENST00000301475 ANKRD44Q8N8A2 993 aa13.25□□□□□ -0.29
ZNF558-201ENST00000301475 API5Q9BZZ5 524 aaKnown RBP13.25□□□□□ -0.29
ZNF558-201ENST00000301475 IFT57Q9NWB7 429 aa13.25□□□□□ -0.29
ZNF558-201ENST00000301475 ARHGEF40Q8TER5 1519 aa13.25□□□□□ -0.29
ZNF558-201ENST00000301475 FRMPD1Q5SYB0 1578 aa13.25□□□□□ -0.29
ZNF558-201ENST00000301475 GNAI1P63096 354 aa13.24□□□□□ -0.29
ZNF558-201ENST00000301475 HMGN5P82970 282 aaKnown RBP13.24□□□□□ -0.29
ZNF558-201ENST00000301475 CASC1Q6TDU7 716 aa13.24□□□□□ -0.29
ZNF558-201ENST00000301475 ERC2O15083 957 aa13.23□□□□□ -0.29
ZNF558-201ENST00000301475 CEP85Q6P2H3 762 aa13.23□□□□□ -0.29
ZNF558-201ENST00000301475 PLPPR3Q6T4P5 718 aa13.23□□□□□ -0.29
ZNF558-201ENST00000301475 KIF20BQ96Q89 1820 aa13.23□□□□□ -0.29
ZNF558-201ENST00000301475 ZFYVE9O95405 1425 aa13.23□□□□□ -0.29
ZNF558-201ENST00000301475 DLG5Q8TDM6 1919 aa13.23□□□□□ -0.29
ZNF558-201ENST00000301475 TRHP20396 242 aaPredicted RBP13.23□□□□□ -0.29
ZNF558-201ENST00000301475 FBXO31Q5XUX0 539 aaPredicted RBP13.23□□□□□ -0.29
ZNF558-201ENST00000301475 ABCC3O15438 1527 aa13.23□□□□□ -0.29
ZNF558-201ENST00000301475 DIP2BQ9P265 1576 aa13.23□□□□□ -0.29
ZNF558-201ENST00000301475 CUL4AQ13619 759 aa13.23□□□□□ -0.29
ZNF558-201ENST00000301475 NOL8Q76FK4 1167 aaKnown RBP13.23□□□□□ -0.29
ZNF558-201ENST00000301475 KIF24Q5T7B8 1368 aa13.23□□□□□ -0.29
ZNF558-201ENST00000301475 RGS12O14924 1447 aa13.23□□□□□ -0.29
ZNF558-201ENST00000301475 PPP4R3BQ5MIZ7 849 aa13.22□□□□□ -0.29
ZNF558-201ENST00000301475 PALD1Q9ULE6 856 aa13.22□□□□□ -0.29
ZNF558-201ENST00000301475 NEXMIFQ5QGS0 1516 aa13.22□□□□□ -0.29
ZNF558-201ENST00000301475 RPGRIP1LQ68CZ1 1315 aa13.22□□□□□ -0.29
ZNF558-201ENST00000301475 FKBP5Q13451 457 aaPredicted RBP13.22□□□□□ -0.29
ZNF558-201ENST00000301475 KRT24Q2M2I5 525 aa13.22□□□□□ -0.29
ZNF558-201ENST00000301475 SYAP1Q96A49 352 aaPredicted RBP13.22□□□□□ -0.29
ZNF558-201ENST00000301475 BCL2L12Q9HB09 334 aa13.22□□□□□ -0.29
ZNF558-201ENST00000301475 MSH6P52701 1360 aa13.21□□□□□ -0.29
ZNF558-201ENST00000301475 SPTLC3Q9NUV7 552 aa13.21□□□□□ -0.29
ZNF558-201ENST00000301475 TERF2IPQ9NYB0 399 aa13.21□□□□□ -0.29
ZNF558-201ENST00000301475 STK26Q9P289 416 aa13.21□□□□□ -0.29
ZNF558-201ENST00000301475 ADCY5O95622 1261 aa13.21□□□□□ -0.29
ZNF558-201ENST00000301475 KIF3AQ9Y496 699 aa13.21□□□□□ -0.29
ZNF558-201ENST00000301475 RTL1A6NKG5 1358 aa13.21□□□□□ -0.3
ZNF558-201ENST00000301475 POLKQ9UBT6 870 aa13.21□□□□□ -0.3
ZNF558-201ENST00000301475 MINK1Q8N4C8 1332 aaPredicted RBP13.2□□□□□ -0.3
ZNF558-201ENST00000301475 FAM83GA6ND36 823 aa13.2□□□□□ -0.3
ZNF558-201ENST00000301475 USP48Q86UV5 1035 aa13.2□□□□□ -0.3
ZNF558-201ENST00000301475 SIGLEC1Q9BZZ2 1709 aa13.19□□□□□ -0.3
ZNF558-201ENST00000301475 CLTCQ00610 1675 aaKnown RBP13.19□□□□□ -0.3
ZNF558-201ENST00000301475 PHF14O94880 888 aa13.19□□□□□ -0.3
ZNF558-201ENST00000301475 HCLS1P14317 486 aaPredicted RBP13.19□□□□□ -0.3
ZNF558-201ENST00000301475 FAM184AQ8NB25 1140 aa13.19□□□□□ -0.3
ZNF558-201ENST00000301475 MAP2P11137 1827 aaKnown RBP13.19□□□□□ -0.3
ZNF558-201ENST00000301475 RIMS2Q9UQ26 1411 aa13.19□□□□□ -0.3
ZNF558-201ENST00000301475 PTPRMP28827 1452 aa13.19□□□□□ -0.3
ZNF558-201ENST00000301475 IDI1Q13907 227 aa13.19□□□□□ -0.3
ZNF558-201ENST00000301475 TSHZ3Q63HK5 1081 aa13.19□□□□□ -0.3
ZNF558-201ENST00000301475 RPAP2Q8IXW5 612 aaPredicted RBP13.19□□□□□ -0.3
ZNF558-201ENST00000301475 MEIS3Q99687 375 aa13.19□□□□□ -0.3
ZNF558-201ENST00000301475 DIP2CQ9Y2E4 1556 aa13.19□□□□□ -0.3
ZNF558-201ENST00000301475 TUBGCP6Q96RT7 1819 aa13.19□□□□□ -0.3
ZNF558-201ENST00000301475 PIK3C2BO00750 1634 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms