RNA–Protein interactions for RNA: ENST00000296273.6

RFC4-201, Transcript of replication factor C subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RFC4, Length 1,384 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-201ENST00000296273 C1QTNF8P60827 252 aa14.85□□□□□ -0.03
RFC4-201ENST00000296273 SYTL4Q96C24 671 aaPredicted RBP14.85□□□□□ -0.03
RFC4-201ENST00000296273 LTV1Q96GA3 475 aaPredicted RBP14.85□□□□□ -0.03
RFC4-201ENST00000296273 COL24A1Q17RW2 1714 aa14.85□□□□□ -0.03
RFC4-201ENST00000296273 HOXC9P31274 260 aa14.84□□□□□ -0.03
RFC4-201ENST00000296273 TONSLQ96HA7 1378 aa14.83□□□□□ -0.04
RFC4-201ENST00000296273 MAP3K19Q56UN5 1328 aa14.83□□□□□ -0.04
RFC4-201ENST00000296273 AMPHP49418 695 aa14.83□□□□□ -0.04
RFC4-201ENST00000296273 PRIM1P49642 420 aaKnown RBP14.83□□□□□ -0.04
RFC4-201ENST00000296273 KLHL34Q8N239 644 aa14.83□□□□□ -0.04
RFC4-201ENST00000296273 ZCRB1Q8TBF4 217 aaKnown RBP14.83□□□□□ -0.04
RFC4-201ENST00000296273 CGNL1Q0VF96 1302 aa14.82□□□□□ -0.04
RFC4-201ENST00000296273 SENP3-EIF4A1A0A087X0R7 540 aa14.82□□□□□ -0.04
RFC4-201ENST00000296273 LY75O60449 1722 aa14.82□□□□□ -0.04
RFC4-201ENST00000296273 RTL1A6NKG5 1358 aa14.82□□□□□ -0.04
RFC4-201ENST00000296273 KAT6BQ8WYB5 2073 aa14.81□□□□□ -0.04
RFC4-201ENST00000296273 DOT1LQ8TEK3 1739 aa14.81□□□□□ -0.04
RFC4-201ENST00000296273 NSD2O96028 1365 aa14.81□□□□□ -0.04
RFC4-201ENST00000296273 USP47Q96K76 1375 aa14.81□□□□□ -0.04
RFC4-201ENST00000296273 CCNL1Q9UK58 526 aaPredicted RBP14.8□□□□□ -0.04
RFC4-201ENST00000296273 TESK2Q96S53 571 aa14.79□□□□□ -0.04
RFC4-201ENST00000296273 SMG6Q86US8 1419 aaKnown RBP14.78□□□□□ -0.04
RFC4-201ENST00000296273 MEGF6O75095 1541 aa14.78□□□□□ -0.04
RFC4-201ENST00000296273 SHANK3Q9BYB0 1731 aa14.78□□□□□ -0.04
RFC4-201ENST00000296273 GRIN3BO60391 1043 aa14.78□□□□□ -0.04
RFC4-201ENST00000296273 GIGYF1O75420 1035 aaPredicted RBP14.78□□□□□ -0.04
RFC4-201ENST00000296273 KCNQ4P56696 695 aa14.78□□□□□ -0.04
RFC4-201ENST00000296273 PELP1Q8IZL8 1130 aaKnown RBP14.78□□□□□ -0.04
RFC4-201ENST00000296273 TUBGCP6Q96RT7 1819 aa14.78□□□□□ -0.04
RFC4-201ENST00000296273 ST20-MTHFSA0A0A6YYL1 179 aa14.77□□□□□ -0.04
RFC4-201ENST00000296273 RAPGEF4Q8WZA2 1011 aa14.77□□□□□ -0.04
RFC4-201ENST00000296273 NBPF6Q5VWK0 638 aa14.76□□□□□ -0.05
RFC4-201ENST00000296273 NLGN2Q8NFZ4 835 aa14.76□□□□□ -0.05
RFC4-201ENST00000296273 NBPF4Q96M43 638 aa14.76□□□□□ -0.05
RFC4-201ENST00000296273 FBLN1P23142 703 aa14.75□□□□□ -0.05
RFC4-201ENST00000296273 COL23A1Q86Y22 540 aaPredicted RBP14.75□□□□□ -0.05
RFC4-201ENST00000296273 FLAD1Q8NFF5 587 aa14.75□□□□□ -0.05
RFC4-201ENST00000296273 RGPD2P0DJD1 1756 aa14.75□□□□□ -0.05
RFC4-201ENST00000296273 KIF24Q5T7B8 1368 aa14.75□□□□□ -0.05
RFC4-201ENST00000296273 TATP17735 454 aaPredicted RBP14.74□□□□□ -0.05
RFC4-201ENST00000296273 RRS1Q15050 365 aaKnown RBP14.74□□□□□ -0.05
RFC4-201ENST00000296273 PCDH11XQ9BZA7 1347 aa14.74□□□□□ -0.05
RFC4-201ENST00000296273 PCDH11YQ9BZA8 1340 aa14.74□□□□□ -0.05
RFC4-201ENST00000296273 FYB1O15117 783 aa14.73□□□□□ -0.05
RFC4-201ENST00000296273 INSRP06213 1382 aa14.73□□□□□ -0.05
RFC4-201ENST00000296273 TMF1P82094 1093 aa14.73□□□□□ -0.05
RFC4-201ENST00000296273 CD2APQ9Y5K6 639 aa14.73□□□□□ -0.05
RFC4-201ENST00000296273 FLT4P35916 1363 aa14.72□□□□□ -0.05
RFC4-201ENST00000296273 C5P01031 1676 aa14.72□□□□□ -0.05
RFC4-201ENST00000296273 YBX3P16989 372 aaKnown RBP eCLIP14.72□□□□□ -0.053e-7■■□□□ 11.9
RFC4-201ENST00000296273 USHBP1Q8N6Y0 703 aa14.72□□□□□ -0.05
RFC4-201ENST00000296273 GGNBP2Q9H3C7 697 aa14.72□□□□□ -0.05
RFC4-201ENST00000296273 PALLDQ8WX93 1383 aa14.71□□□□□ -0.05
RFC4-201ENST00000296273 CDCA8Q53HL2 280 aa14.71□□□□□ -0.06
RFC4-201ENST00000296273 SMARCC1Q92922 1105 aaPredicted RBP14.71□□□□□ -0.06
RFC4-201ENST00000296273 NSD3Q9BZ95 1437 aa14.69□□□□□ -0.06
RFC4-201ENST00000296273 GOLGB1Q14789 3259 aaKnown RBP14.69□□□□□ -0.06
RFC4-201ENST00000296273 HSP90AB2PQ58FF8 381 aa14.69□□□□□ -0.06
RFC4-201ENST00000296273 MSL1Q68DK7 614 aa14.69□□□□□ -0.06
RFC4-201ENST00000296273 MPRIPQ6WCQ1 1025 aa14.69□□□□□ -0.06
RFC4-201ENST00000296273 TIMELESSQ9UNS1 1208 aa14.68□□□□□ -0.06
RFC4-201ENST00000296273 CYP27B1O15528 508 aa14.67□□□□□ -0.06
RFC4-201ENST00000296273 AK7Q96M32 723 aa14.67□□□□□ -0.06
RFC4-201ENST00000296273 TAF1LQ8IZX4 1826 aa14.67□□□□□ -0.06
RFC4-201ENST00000296273 C4BP0C0L5 1744 aa14.66□□□□□ -0.06
RFC4-201ENST00000296273 KIF20BQ96Q89 1820 aa14.66□□□□□ -0.06
RFC4-201ENST00000296273 ATP10DQ9P241 1426 aa14.65□□□□□ -0.06
RFC4-201ENST00000296273 NKX1-1Q15270 411 aaPredicted RBP14.65□□□□□ -0.06
RFC4-201ENST00000296273 SPG7Q9UQ90 795 aa14.65□□□□□ -0.06
RFC4-201ENST00000296273 PKD1L3Q7Z443 1732 aa14.65□□□□□ -0.06
RFC4-201ENST00000296273 SSFA2P28290 1259 aa14.64□□□□□ -0.07
RFC4-201ENST00000296273 GPBP1L1Q9HC44 474 aaPredicted RBP14.64□□□□□ -0.07
RFC4-201ENST00000296273 NCAPD2Q15021 1401 aa14.64□□□□□ -0.07
RFC4-201ENST00000296273 TOGARAM1Q9Y4F4 1720 aa14.63□□□□□ -0.07
RFC4-201ENST00000296273 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.63□□□□□ -0.074e-6■■■□□ 17.2
RFC4-201ENST00000296273 ADCY9O60503 1353 aa14.63□□□□□ -0.07
RFC4-201ENST00000296273 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.62□□□□□ -0.07
RFC4-201ENST00000296273 PIGBQ92521 554 aa14.62□□□□□ -0.07
RFC4-201ENST00000296273 ITGB4P16144 1822 aa14.62□□□□□ -0.07
RFC4-201ENST00000296273 IGSF1Q8N6C5 1336 aa14.62□□□□□ -0.07
RFC4-201ENST00000296273 LOC102724428A0A0B4J2F2 783 aa14.61□□□□□ -0.07
RFC4-201ENST00000296273 SIK1P57059 783 aa14.61□□□□□ -0.07
RFC4-201ENST00000296273 EMILIN1Q9Y6C2 1016 aa14.61□□□□□ -0.07
RFC4-201ENST00000296273 UBR3Q6ZT12 1888 aa14.61□□□□□ -0.07
RFC4-201ENST00000296273 WASHC2AQ641Q2 1341 aa14.61□□□□□ -0.07
RFC4-201ENST00000296273 ZNF316A6NFI3 1004 aaPredicted RBP14.6□□□□□ -0.07
RFC4-201ENST00000296273 PHF14O94880 888 aa14.6□□□□□ -0.07
RFC4-201ENST00000296273 IFFO2Q5TF58 517 aa14.6□□□□□ -0.07
RFC4-201ENST00000296273 TMOD3Q9NYL9 352 aa14.6□□□□□ -0.07
RFC4-201ENST00000296273 PLEKHG2Q9H7P9 1386 aa14.6□□□□□ -0.07
RFC4-201ENST00000296273 CARD14Q9BXL6 1004 aa14.6□□□□□ -0.07
RFC4-201ENST00000296273 ANKRD26Q9UPS8 1709 aa14.59□□□□□ -0.07
RFC4-201ENST00000296273 PPM1GO15355 546 aaPredicted RBP14.59□□□□□ -0.07
RFC4-201ENST00000296273 AMIGO3Q86WK7 504 aa14.59□□□□□ -0.07
RFC4-201ENST00000296273 IFNL2Q8IZJ0 200 aa14.59□□□□□ -0.07
RFC4-201ENST00000296273 LINC00116Q8NCU8 138 aa14.59□□□□□ -0.07
RFC4-201ENST00000296273 MAP2P11137 1827 aaKnown RBP14.58□□□□□ -0.08
RFC4-201ENST00000296273 HSPA6P17066 643 aa14.58□□□□□ -0.08
RFC4-201ENST00000296273 ATP6V1AP38606 617 aa14.58□□□□□ -0.08
RFC4-201ENST00000296273 GNPATO15228 680 aa14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms