RNA–Protein interactions for RNA: ENST00000295522.3

CLDN1-201, Transcript of claudin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLDN1, Length 3,481 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN1-201ENST00000295522 GTF3C6Q969F1 213 aa12.22□□□□□ -0.45
CLDN1-201ENST00000295522 TRMT1Q9NXH9 659 aaKnown RBP12.22□□□□□ -0.45
CLDN1-201ENST00000295522 CTNNA3Q9UI47 895 aa12.22□□□□□ -0.45
CLDN1-201ENST00000295522 GOLGA6L4A6NEF3 574 aa12.21□□□□□ -0.45
CLDN1-201ENST00000295522 CKAP2LQ8IYA6 745 aa12.21□□□□□ -0.45
CLDN1-201ENST00000295522 ANKRD7Q92527 254 aa12.21□□□□□ -0.45
CLDN1-201ENST00000295522 CALCOCO1Q9P1Z2 691 aa12.21□□□□□ -0.45
CLDN1-201ENST00000295522 POLR3GO15318 223 aaPredicted RBP12.21□□□□□ -0.45
CLDN1-201ENST00000295522 IRX3P78415 501 aaPredicted RBP12.21□□□□□ -0.45
CLDN1-201ENST00000295522 SLC4A10Q6U841 1118 aa12.21□□□□□ -0.45
CLDN1-201ENST00000295522 SPTLC3Q9NUV7 552 aa12.21□□□□□ -0.45
CLDN1-201ENST00000295522 WDR33Q9C0J8 1336 aaKnown RBP12.21□□□□□ -0.46
CLDN1-201ENST00000295522 SLFN14P0C7P3 912 aa12.21□□□□□ -0.46
CLDN1-201ENST00000295522 MX1P20591 662 aa12.21□□□□□ -0.46
CLDN1-201ENST00000295522 TERF2Q15554 542 aa12.21□□□□□ -0.46
CLDN1-201ENST00000295522 NPC1L1Q9UHC9 1359 aa12.2□□□□□ -0.46
CLDN1-201ENST00000295522 LUZP1Q86V48 1076 aa12.2□□□□□ -0.46
CLDN1-201ENST00000295522 PHF23Q9BUL5 403 aaPredicted RBP12.2□□□□□ -0.46
CLDN1-201ENST00000295522 NRBP1Q9UHY1 535 aa12.2□□□□□ -0.46
CLDN1-201ENST00000295522 SRCIN1Q9C0H9 1055 aa12.2□□□□□ -0.46
CLDN1-201ENST00000295522 FBXW7Q969H0 707 aa12.2□□□□□ -0.46
CLDN1-201ENST00000295522 PALD1Q9ULE6 856 aa12.2□□□□□ -0.46
CLDN1-201ENST00000295522 GORABQ5T7V8 394 aa12.19□□□□□ -0.46
CLDN1-201ENST00000295522 CABP2Q9NPB3 220 aa12.19□□□□□ -0.46
CLDN1-201ENST00000295522 DDX41Q9UJV9 622 aaKnown RBP12.19□□□□□ -0.46
CLDN1-201ENST00000295522 ADGRF5Q8IZF2 1346 aa12.19□□□□□ -0.46
CLDN1-201ENST00000295522 CCDC192P0DO97 292 aa12.19□□□□□ -0.46
CLDN1-201ENST00000295522 FBLN1P23142 703 aa12.19□□□□□ -0.46
CLDN1-201ENST00000295522 PRKAR2BP31323 418 aa12.19□□□□□ -0.46
CLDN1-201ENST00000295522 ELF2Q15723 593 aa12.19□□□□□ -0.46
CLDN1-201ENST00000295522 PLXNC1O60486 1568 aa12.18□□□□□ -0.46
CLDN1-201ENST00000295522 AP5Z1O43299 807 aa12.18□□□□□ -0.46
CLDN1-201ENST00000295522 TPM3P06753 285 aa12.18□□□□□ -0.46
CLDN1-201ENST00000295522 FERMT3Q86UX7 667 aa12.18□□□□□ -0.46
CLDN1-201ENST00000295522 KIF18AQ8NI77 898 aa12.18□□□□□ -0.46
CLDN1-201ENST00000295522 SYTL4Q96C24 671 aaPredicted RBP12.18□□□□□ -0.46
CLDN1-201ENST00000295522 CHMP4CQ96CF2 233 aa12.18□□□□□ -0.46
CLDN1-201ENST00000295522 NOL10Q9BSC4 688 aaKnown RBP12.18□□□□□ -0.46
CLDN1-201ENST00000295522 ITSN2Q9NZM3 1697 aa12.18□□□□□ -0.46
CLDN1-201ENST00000295522 SMTNL1A8MU46 457 aa12.18□□□□□ -0.46
CLDN1-201ENST00000295522 ABCC11Q96J66 1382 aa12.18□□□□□ -0.46
CLDN1-201ENST00000295522 CEP135Q66GS9 1140 aa12.17□□□□□ -0.46
CLDN1-201ENST00000295522 FILIP1Q7Z7B0 1213 aa12.17□□□□□ -0.46
CLDN1-201ENST00000295522 ZNF215Q9UL58 517 aaPredicted RBP12.17□□□□□ -0.46
CLDN1-201ENST00000295522 SMC3Q9UQE7 1217 aa12.17□□□□□ -0.46
CLDN1-201ENST00000295522 MAP4K4O95819 1239 aaPredicted RBP12.17□□□□□ -0.46
CLDN1-201ENST00000295522 TWISTNBQ3B726 338 aaPredicted RBP12.17□□□□□ -0.46
CLDN1-201ENST00000295522 DDX54Q8TDD1 881 aaKnown RBP12.17□□□□□ -0.46
CLDN1-201ENST00000295522 EXOC6BQ9Y2D4 811 aa12.17□□□□□ -0.46
CLDN1-201ENST00000295522 SYNMO15061 1565 aa12.16□□□□□ -0.46
CLDN1-201ENST00000295522 DIAPH1O60610 1272 aaKnown RBP12.16□□□□□ -0.46
CLDN1-201ENST00000295522 DNM1Q05193 864 aaKnown RBP12.16□□□□□ -0.46
CLDN1-201ENST00000295522 ADCY10Q96PN6 1610 aa12.16□□□□□ -0.46
CLDN1-201ENST00000295522 SYCP2Q9BX26 1530 aa12.16□□□□□ -0.46
CLDN1-201ENST00000295522 MCM2P49736 904 aa12.16□□□□□ -0.46
CLDN1-201ENST00000295522 UBE2HP62256 183 aa12.16□□□□□ -0.46
CLDN1-201ENST00000295522 ALDH1L2Q3SY69 923 aa12.16□□□□□ -0.46
CLDN1-201ENST00000295522 EIF2AK4Q9P2K8 1649 aaKnown RBP12.16□□□□□ -0.46
CLDN1-201ENST00000295522 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.16□□□□□ -0.46
CLDN1-201ENST00000295522 CTIFO43310 598 aaKnown RBP12.15□□□□□ -0.46
CLDN1-201ENST00000295522 KMT5BQ4FZB7 885 aa12.15□□□□□ -0.46
CLDN1-201ENST00000295522 ZNF397Q8NF99 534 aaPredicted RBP12.15□□□□□ -0.46
CLDN1-201ENST00000295522 NEK11Q8NG66 645 aa12.15□□□□□ -0.46
CLDN1-201ENST00000295522 API5Q9BZZ5 524 aaKnown RBP12.15□□□□□ -0.46
CLDN1-201ENST00000295522 CLIP2Q9UDT6 1046 aa12.15□□□□□ -0.46
CLDN1-201ENST00000295522 ANKRD36BQ8N2N9 1353 aa12.15□□□□□ -0.47
CLDN1-201ENST00000295522 PTPN14Q15678 1187 aa12.14□□□□□ -0.47
CLDN1-201ENST00000295522 C10orf67Q8IYJ2 551 aa12.14□□□□□ -0.47
CLDN1-201ENST00000295522 MRPL50Q8N5N7 158 aaKnown RBP12.14□□□□□ -0.47
CLDN1-201ENST00000295522 HNRNPH2P55795 449 aaKnown RBP12.14□□□□□ -0.47
CLDN1-201ENST00000295522 DCTN1Q14203 1278 aa12.14□□□□□ -0.47
CLDN1-201ENST00000295522 KRT24Q2M2I5 525 aa12.14□□□□□ -0.47
CLDN1-201ENST00000295522 DCTPP1Q9H773 170 aa12.14□□□□□ -0.47
CLDN1-201ENST00000295522 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.14□□□□□ -0.47
CLDN1-201ENST00000295522 STX6O43752 255 aa12.13□□□□□ -0.47
CLDN1-201ENST00000295522 CAPN2P17655 700 aa12.13□□□□□ -0.47
CLDN1-201ENST00000295522 FAM173BQ6P4H8 233 aa12.13□□□□□ -0.47
CLDN1-201ENST00000295522 FBXO38Q6PIJ6 1188 aa12.13□□□□□ -0.47
CLDN1-201ENST00000295522 ATP6V1DQ9Y5K8 247 aa12.13□□□□□ -0.47
CLDN1-201ENST00000295522 HTATSF1O43719 755 aaKnown RBP12.13□□□□□ -0.47
CLDN1-201ENST00000295522 VAMP4O75379 141 aa12.13□□□□□ -0.47
CLDN1-201ENST00000295522 CPA1P15085 419 aa12.13□□□□□ -0.47
CLDN1-201ENST00000295522 ANO6Q4KMQ2 910 aa12.13□□□□□ -0.47
CLDN1-201ENST00000295522 RSPH14Q9UHP6 348 aa12.13□□□□□ -0.47
CLDN1-201ENST00000295522 PAXBP1Q9Y5B6 917 aa12.13□□□□□ -0.47
CLDN1-201ENST00000295522 GOLGA6L19H0YKK7 550 aa12.13□□□□□ -0.47
CLDN1-201ENST00000295522 NUP62CLQ9H1M0 184 aa12.13□□□□□ -0.47
CLDN1-201ENST00000295522 TNMDQ9H2S6 317 aa12.13□□□□□ -0.47
CLDN1-201ENST00000295522 TOMM22Q9NS69 142 aa12.13□□□□□ -0.47
CLDN1-201ENST00000295522 ZSCAN22P10073 491 aaPredicted RBP12.12□□□□□ -0.47
CLDN1-201ENST00000295522 MAP3K11Q16584 847 aa12.12□□□□□ -0.47
CLDN1-201ENST00000295522 CCDC83Q8IWF9 413 aa12.12□□□□□ -0.47
CLDN1-201ENST00000295522 KANK1Q14678 1352 aa12.12□□□□□ -0.47
CLDN1-201ENST00000295522 ABCC10Q5T3U5 1492 aa12.12□□□□□ -0.47
CLDN1-201ENST00000295522 BICD2Q8TD16 824 aa12.12□□□□□ -0.47
CLDN1-201ENST00000295522 MORC2Q9Y6X9 1032 aaPredicted RBP12.12□□□□□ -0.47
CLDN1-201ENST00000295522 SYT1P21579 422 aa12.12□□□□□ -0.47
CLDN1-201ENST00000295522 C8orf58Q8NAV2 365 aa12.12□□□□□ -0.47
CLDN1-201ENST00000295522 FAM200AQ8TCP9 573 aa12.12□□□□□ -0.47
CLDN1-201ENST00000295522 MEIS3Q99687 375 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms