RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 PIK3R4Q99570 1358 aa14.47□□□□□ -0.09
CUX1-202ENST00000292538 GCP02774 474 aa14.47□□□□□ -0.09
CUX1-202ENST00000292538 ATF3P18847 181 aa14.47□□□□□ -0.09
CUX1-202ENST00000292538 API5Q9BZZ5 524 aaKnown RBP14.47□□□□□ -0.09
CUX1-202ENST00000292538 EIF2S2P20042 333 aaKnown RBP14.47□□□□□ -0.09
CUX1-202ENST00000292538 CABLES1Q8TDN4 633 aa14.47□□□□□ -0.09
CUX1-202ENST00000292538 IGSF1Q8N6C5 1336 aa14.47□□□□□ -0.09
CUX1-202ENST00000292538 G2E3Q7L622 706 aa14.46□□□□□ -0.09
CUX1-202ENST00000292538 AKAP12Q02952 1782 aa14.46□□□□□ -0.1
CUX1-202ENST00000292538 IL17REQ8NFR9 667 aa14.45□□□□□ -0.1
CUX1-202ENST00000292538 ARHGEF10O15013 1369 aa14.45□□□□□ -0.1
CUX1-202ENST00000292538 MFAP1P55081 439 aaKnown RBP14.45□□□□□ -0.1
CUX1-202ENST00000292538 SETD1BQ9UPS6 1966 aaKnown RBP14.45□□□□□ -0.1
CUX1-202ENST00000292538 ANKARQ7Z5J8 1434 aa14.45□□□□□ -0.1
CUX1-202ENST00000292538 HDAC1Q13547 482 aaPredicted RBP14.45□□□□□ -0.1
CUX1-202ENST00000292538 MPRIPQ6WCQ1 1025 aa14.45□□□□□ -0.1
CUX1-202ENST00000292538 IP6K1Q92551 441 aa14.45□□□□□ -0.1
CUX1-202ENST00000292538 DDRGK1Q96HY6 314 aa14.45□□□□□ -0.1
CUX1-202ENST00000292538 LGR6Q9HBX8 967 aa14.45□□□□□ -0.1
CUX1-202ENST00000292538 STK31Q9BXU1 1019 aa14.44□□□□□ -0.1
CUX1-202ENST00000292538 PEAK1Q9H792 1746 aa14.44□□□□□ -0.1
CUX1-202ENST00000292538 UPF2Q9HAU5 1272 aaKnown RBP14.44□□□□□ -0.1
CUX1-202ENST00000292538 ARHGAP45Q92619 1136 aa14.43□□□□□ -0.1
CUX1-202ENST00000292538 C19orf44Q9H6X5 657 aa14.43□□□□□ -0.1
CUX1-202ENST00000292538 FKBP5Q13451 457 aaPredicted RBP14.43□□□□□ -0.1
CUX1-202ENST00000292538 KCNH5Q8NCM2 988 aa14.43□□□□□ -0.1
CUX1-202ENST00000292538 AXIN2Q9Y2T1 843 aa14.42□□□□□ -0.1
CUX1-202ENST00000292538 ZNF530Q6P9A1 599 aaPredicted RBP14.42□□□□□ -0.1
CUX1-202ENST00000292538 CHD1LQ86WJ1 897 aa14.42□□□□□ -0.1
CUX1-202ENST00000292538 SIRT2Q8IXJ6 389 aa14.42□□□□□ -0.1
CUX1-202ENST00000292538 SPRYD3Q8NCJ5 442 aa14.42□□□□□ -0.1
CUX1-202ENST00000292538 HAP1P54257 671 aaPredicted RBP14.42□□□□□ -0.1
CUX1-202ENST00000292538 MEIS3Q99687 375 aa14.42□□□□□ -0.1
CUX1-202ENST00000292538 ADGRL3Q9HAR2 1447 aa14.41□□□□□ -0.1
CUX1-202ENST00000292538 CSB-PGBD3P0DP91 1061 aa14.41□□□□□ -0.1
CUX1-202ENST00000292538 CHRNA2Q15822 529 aa14.41□□□□□ -0.1
CUX1-202ENST00000292538 ANKRD24Q8TF21 1146 aa14.41□□□□□ -0.1
CUX1-202ENST00000292538 TAF7Q15545 349 aaPredicted RBP14.41□□□□□ -0.1
CUX1-202ENST00000292538 RTL5Q5HYW3 569 aaPredicted RBP14.41□□□□□ -0.1
CUX1-202ENST00000292538 NLRP2Q9NX02 1062 aa14.41□□□□□ -0.1
CUX1-202ENST00000292538 ABCC4O15439 1325 aa14.4□□□□□ -0.1
CUX1-202ENST00000292538 SMC5Q8IY18 1101 aa14.4□□□□□ -0.1
CUX1-202ENST00000292538 CHMP4BQ9H444 224 aaKnown RBP14.4□□□□□ -0.1
CUX1-202ENST00000292538 TOPAZ1Q8N9V7 1692 aa14.4□□□□□ -0.1
CUX1-202ENST00000292538 ANXA1P04083 346 aa14.4□□□□□ -0.1
CUX1-202ENST00000292538 BRPF1P55201 1214 aaPredicted RBP14.4□□□□□ -0.1
CUX1-202ENST00000292538 TEFQ10587 303 aa14.4□□□□□ -0.1
CUX1-202ENST00000292538 CRB1P82279 1406 aa14.4□□□□□ -0.1
CUX1-202ENST00000292538 NRKQ7Z2Y5 1582 aa14.39□□□□□ -0.11
CUX1-202ENST00000292538 KCNQ3O43525 872 aa14.39□□□□□ -0.11
CUX1-202ENST00000292538 NUCB1Q02818 461 aa14.39□□□□□ -0.11
CUX1-202ENST00000292538 XRN1Q8IZH2 1706 aaKnown RBP14.39□□□□□ -0.11
CUX1-202ENST00000292538 TMEM94Q12767 1356 aa14.39□□□□□ -0.11
CUX1-202ENST00000292538 C1orf141Q5JVX7 400 aa14.38□□□□□ -0.11
CUX1-202ENST00000292538 PIK3C2AO00443 1686 aa14.38□□□□□ -0.11
CUX1-202ENST00000292538 KDRP35968 1356 aa14.38□□□□□ -0.11
CUX1-202ENST00000292538 SMARCA5O60264 1052 aaPredicted RBP14.38□□□□□ -0.11
CUX1-202ENST00000292538 HDGFL1Q5TGJ6 251 aa14.38□□□□□ -0.11
CUX1-202ENST00000292538 C16orf71Q8IYS4 520 aaPredicted RBP14.38□□□□□ -0.11
CUX1-202ENST00000292538 MAP3K5Q99683 1374 aa14.38□□□□□ -0.11
CUX1-202ENST00000292538 CCDC30Q5VVM6 783 aa14.37□□□□□ -0.11
CUX1-202ENST00000292538 ARHGEF25Q86VW2 580 aa14.37□□□□□ -0.11
CUX1-202ENST00000292538 FLIIQ13045 1269 aa14.37□□□□□ -0.11
CUX1-202ENST00000292538 SLKQ9H2G2 1235 aaPredicted RBP14.37□□□□□ -0.11
CUX1-202ENST00000292538 PHAXQ9H814 394 aaKnown RBP14.37□□□□□ -0.11
CUX1-202ENST00000292538 BTBD11A6QL63 1104 aa14.36□□□□□ -0.11
CUX1-202ENST00000292538 MSH6P52701 1360 aa14.36□□□□□ -0.11
CUX1-202ENST00000292538 PLEKHO1Q53GL0 409 aaPredicted RBP14.36□□□□□ -0.11
CUX1-202ENST00000292538 DLG5Q8TDM6 1919 aa14.35□□□□□ -0.11
CUX1-202ENST00000292538 USP19O94966 1318 aa14.35□□□□□ -0.11
CUX1-202ENST00000292538 GCC1Q96CN9 775 aa14.35□□□□□ -0.11
CUX1-202ENST00000292538 INTS3Q68E01 1043 aaKnown RBP14.35□□□□□ -0.11
CUX1-202ENST00000292538 KIAA0232Q92628 1395 aa14.34□□□□□ -0.11
CUX1-202ENST00000292538 NALCNQ8IZF0 1738 aa14.34□□□□□ -0.11
CUX1-202ENST00000292538 PTPRCP08575 1304 aa14.34□□□□□ -0.11
CUX1-202ENST00000292538 OTUD7AQ8TE49 926 aaPredicted RBP14.34□□□□□ -0.11
CUX1-202ENST00000292538 HTATSF1O43719 755 aaKnown RBP14.33□□□□□ -0.12
CUX1-202ENST00000292538 ADAMTSL3P82987 1691 aa14.33□□□□□ -0.12
CUX1-202ENST00000292538 CEP85Q6P2H3 762 aa14.32□□□□□ -0.12
CUX1-202ENST00000292538 RAPGEF4Q8WZA2 1011 aa14.32□□□□□ -0.12
CUX1-202ENST00000292538 FMN2Q9NZ56 1722 aa14.32□□□□□ -0.12
CUX1-202ENST00000292538 PRAMEF22A3QJZ6 481 aa14.32□□□□□ -0.12
CUX1-202ENST00000292538 C22orf23Q9BZE7 217 aa14.32□□□□□ -0.12
CUX1-202ENST00000292538 CHPF2Q9P2E5 772 aa14.32□□□□□ -0.12
CUX1-202ENST00000292538 EXOC6BQ9Y2D4 811 aa14.32□□□□□ -0.12
CUX1-202ENST00000292538 SLC39A6Q13433 755 aa14.31□□□□□ -0.12
CUX1-202ENST00000292538 C1orf167Q5SNV9 1468 aa14.31□□□□□ -0.12
CUX1-202ENST00000292538 AIMP1Q12904 312 aaKnown RBP14.31□□□□□ -0.12
CUX1-202ENST00000292538 CHD2O14647 1828 aaKnown RBP14.31□□□□□ -0.12
CUX1-202ENST00000292538 AKAP4Q5JQC9 854 aa14.31□□□□□ -0.12
CUX1-202ENST00000292538 TSHZ3Q63HK5 1081 aa14.31□□□□□ -0.12
CUX1-202ENST00000292538 CADPS2Q86UW7 1296 aa14.31□□□□□ -0.12
CUX1-202ENST00000292538 CCT4P50991 539 aaKnown RBP14.3□□□□□ -0.12
CUX1-202ENST00000292538 ANKRD44Q8N8A2 993 aa14.3□□□□□ -0.12
CUX1-202ENST00000292538 BECN1Q14457 450 aa14.29□□□□□ -0.12
CUX1-202ENST00000292538 TBC1D32Q96NH3 1257 aa14.29□□□□□ -0.12
CUX1-202ENST00000292538 RNMTO43148 476 aaKnown RBP14.29□□□□□ -0.12
CUX1-202ENST00000292538 GNAI2P04899 355 aa14.29□□□□□ -0.12
CUX1-202ENST00000292538 EIF4A1P60842 406 aaKnown RBP14.29□□□□□ -0.12
CUX1-202ENST00000292538 USP35Q9P2H5 1018 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms