RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 RGPD5Q99666 1765 aa13.23□□□□□ -0.29
UPF3B-201ENST00000276201 CC2D1BQ5T0F9 858 aaKnown RBP13.23□□□□□ -0.29
UPF3B-201ENST00000276201 RSPH6AQ9H0K4 717 aa13.23□□□□□ -0.29
UPF3B-201ENST00000276201 EVA1CP58658 441 aa13.22□□□□□ -0.29
UPF3B-201ENST00000276201 AMER1Q5JTC6 1135 aaPredicted RBP13.22□□□□□ -0.29
UPF3B-201ENST00000276201 LARP1Q6PKG0 1096 aaKnown RBP13.22□□□□□ -0.29
UPF3B-201ENST00000276201 UBE2Q2Q8WVN8 375 aa13.22□□□□□ -0.29
UPF3B-201ENST00000276201 CGNL1Q0VF96 1302 aa13.22□□□□□ -0.29
UPF3B-201ENST00000276201 SPATA31A1Q5TZJ5 1347 aa13.22□□□□□ -0.29
UPF3B-201ENST00000276201 MAPK8IP3Q9UPT6 1336 aa13.21□□□□□ -0.29
UPF3B-201ENST00000276201 FBLN1P23142 703 aa13.21□□□□□ -0.29
UPF3B-201ENST00000276201 WDR43Q15061 677 aaKnown RBP eCLIP13.21□□□□□ -0.29
UPF3B-201ENST00000276201 ONECUT3O60422 494 aaPredicted RBP13.21□□□□□ -0.3
UPF3B-201ENST00000276201 PDE3AQ14432 1141 aa13.21□□□□□ -0.3
UPF3B-201ENST00000276201 RTN4Q9NQC3 1192 aaKnown RBP13.21□□□□□ -0.3
UPF3B-201ENST00000276201 FAM98CQ17RN3 349 aaKnown RBP13.2□□□□□ -0.3
UPF3B-201ENST00000276201 THSD7AQ9UPZ6 1657 aa13.2□□□□□ -0.3
UPF3B-201ENST00000276201 MAP3K19Q56UN5 1328 aa13.2□□□□□ -0.3
UPF3B-201ENST00000276201 SEPT12Q8IYM1 358 aa13.2□□□□□ -0.3
UPF3B-201ENST00000276201 CRB1P82279 1406 aa13.19□□□□□ -0.3
UPF3B-201ENST00000276201 ANKRD26Q9UPS8 1709 aa13.19□□□□□ -0.3
UPF3B-201ENST00000276201 BRWD3Q6RI45 1802 aa13.19□□□□□ -0.3
UPF3B-201ENST00000276201 WDR17Q8IZU2 1322 aa13.19□□□□□ -0.3
UPF3B-201ENST00000276201 KNSTRNQ9Y448 316 aa13.18□□□□□ -0.3
UPF3B-201ENST00000276201 E9PSI1 815 aa13.18□□□□□ -0.3
UPF3B-201ENST00000276201 FRAT2O75474 233 aaPredicted RBP13.17□□□□□ -0.3
UPF3B-201ENST00000276201 BECN1Q14457 450 aa13.17□□□□□ -0.3
UPF3B-201ENST00000276201 RRS1Q15050 365 aaKnown RBP13.17□□□□□ -0.3
UPF3B-201ENST00000276201 SKAP1Q86WV1 359 aa13.17□□□□□ -0.3
UPF3B-201ENST00000276201 IP6K1Q92551 441 aa13.17□□□□□ -0.3
UPF3B-201ENST00000276201 PEAK1Q9H792 1746 aa13.17□□□□□ -0.3
UPF3B-201ENST00000276201 L1TD1Q5T7N2 865 aaKnown RBP13.16□□□□□ -0.3
UPF3B-201ENST00000276201 BARGINQ6ZT62 677 aa13.16□□□□□ -0.3
UPF3B-201ENST00000276201 TOM1L2Q6ZVM7 507 aa13.16□□□□□ -0.3
UPF3B-201ENST00000276201 TCP11L2Q8N4U5 519 aa13.16□□□□□ -0.3
UPF3B-201ENST00000276201 ERBB3P21860 1342 aa13.16□□□□□ -0.3
UPF3B-201ENST00000276201 RTL1A6NKG5 1358 aa13.16□□□□□ -0.3
UPF3B-201ENST00000276201 NSD2O96028 1365 aa13.16□□□□□ -0.3
UPF3B-201ENST00000276201 A0A0G2JS52 829 aa13.16□□□□□ -0.3
UPF3B-201ENST00000276201 CSB-PGBD3P0DP91 1061 aa13.16□□□□□ -0.3
UPF3B-201ENST00000276201 HOXC9P31274 260 aa13.16□□□□□ -0.3
UPF3B-201ENST00000276201 SLC4A3P48751 1232 aa13.15□□□□□ -0.3
UPF3B-201ENST00000276201 AMPHP49418 695 aa13.15□□□□□ -0.3
UPF3B-201ENST00000276201 ANKRD24Q8TF21 1146 aa13.15□□□□□ -0.3
UPF3B-201ENST00000276201 NCBP3Q53F19 620 aaKnown RBP13.15□□□□□ -0.3
UPF3B-201ENST00000276201 THRAP3Q9Y2W1 955 aaKnown RBP13.15□□□□□ -0.3
UPF3B-201ENST00000276201 CARD10Q9BWT7 1032 aa13.14□□□□□ -0.31
UPF3B-201ENST00000276201 WNK3Q9BYP7 1800 aa13.14□□□□□ -0.31
UPF3B-201ENST00000276201 EMILIN1Q9Y6C2 1016 aa13.14□□□□□ -0.31
UPF3B-201ENST00000276201 KRT27Q7Z3Y8 459 aa13.13□□□□□ -0.31
UPF3B-201ENST00000276201 PARP4Q9UKK3 1724 aaKnown RBP13.13□□□□□ -0.31
UPF3B-201ENST00000276201 KIF24Q5T7B8 1368 aa13.13□□□□□ -0.31
UPF3B-201ENST00000276201 TNNT2P45379 298 aaPredicted RBP13.13□□□□□ -0.31
UPF3B-201ENST00000276201 UPF1Q92900 1129 aaKnown RBP eCLIP13.13□□□□□ -0.31
UPF3B-201ENST00000276201 LTV1Q96GA3 475 aaPredicted RBP13.13□□□□□ -0.31
UPF3B-201ENST00000276201 FAM208AQ9UK61 1670 aaKnown RBP13.13□□□□□ -0.31
UPF3B-201ENST00000276201 DISP2A7MBM2 1401 aa13.12□□□□□ -0.31
UPF3B-201ENST00000276201 FLT4P35916 1363 aa13.12□□□□□ -0.31
UPF3B-201ENST00000276201 NLRP2Q9NX02 1062 aa13.12□□□□□ -0.31
UPF3B-201ENST00000276201 MAP2P11137 1827 aaKnown RBP13.12□□□□□ -0.31
UPF3B-201ENST00000276201 ANTXR1Q9H6X2 564 aa13.12□□□□□ -0.31
UPF3B-201ENST00000276201 LRRC37A3O60309 1634 aa13.11□□□□□ -0.31
UPF3B-201ENST00000276201 HSP90AB2PQ58FF8 381 aa13.11□□□□□ -0.31
UPF3B-201ENST00000276201 MORC1Q86VD1 984 aa13.11□□□□□ -0.31
UPF3B-201ENST00000276201 POLKQ9UBT6 870 aa13.11□□□□□ -0.31
UPF3B-201ENST00000276201 CLUAP1Q96AJ1 413 aa13.1□□□□□ -0.31
UPF3B-201ENST00000276201 RGPD2P0DJD1 1756 aa13.1□□□□□ -0.31
UPF3B-201ENST00000276201 EP400Q96L91 3159 aa13.1□□□□□ -0.31
UPF3B-201ENST00000276201 RGS3P49796 1198 aa13.09□□□□□ -0.31
UPF3B-201ENST00000276201 FAM182BQ5T319 152 aa13.09□□□□□ -0.31
UPF3B-201ENST00000276201 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.09□□□□□ -0.31
UPF3B-201ENST00000276201 IGHDP01880 384 aa13.09□□□□□ -0.31
UPF3B-201ENST00000276201 CDCA7Q9BWT1 371 aaPredicted RBP13.08□□□□□ -0.32
UPF3B-201ENST00000276201 TBC1D32Q96NH3 1257 aa13.07□□□□□ -0.32
UPF3B-201ENST00000276201 NBPF6Q5VWK0 638 aa13.07□□□□□ -0.32
UPF3B-201ENST00000276201 NBPF4Q96M43 638 aa13.07□□□□□ -0.32
UPF3B-201ENST00000276201 FSD2A1L4K1 749 aa13.06□□□□□ -0.32
UPF3B-201ENST00000276201 DDB1Q16531 1140 aa13.06□□□□□ -0.32
UPF3B-201ENST00000276201 SPINK5Q9NQ38 1064 aaPredicted RBP13.06□□□□□ -0.32
UPF3B-201ENST00000276201 APAF1O14727 1248 aa13.06□□□□□ -0.32
UPF3B-201ENST00000276201 IL2RBP14784 551 aa13.06□□□□□ -0.32
UPF3B-201ENST00000276201 TNS2Q63HR2 1409 aa13.06□□□□□ -0.32
UPF3B-201ENST00000276201 BCAR3O75815 825 aa13.05□□□□□ -0.32
UPF3B-201ENST00000276201 USHBP1Q8N6Y0 703 aa13.05□□□□□ -0.32
UPF3B-201ENST00000276201 ISY1Q9ULR0 285 aaKnown RBP13.05□□□□□ -0.32
UPF3B-201ENST00000276201 UPF2Q9HAU5 1272 aaKnown RBP13.05□□□□□ -0.32
UPF3B-201ENST00000276201 MEGF6O75095 1541 aa13.04□□□□□ -0.32
UPF3B-201ENST00000276201 NCAPD2Q15021 1401 aa13.04□□□□□ -0.32
UPF3B-201ENST00000276201 EIF4A2Q14240 407 aaKnown RBP13.03□□□□□ -0.32
UPF3B-201ENST00000276201 CCDC27Q2M243 656 aa13.03□□□□□ -0.32
UPF3B-201ENST00000276201 FAM196AQ6ZSG2 479 aa13.03□□□□□ -0.32
UPF3B-201ENST00000276201 WDR63Q8IWG1 891 aa13.03□□□□□ -0.32
UPF3B-201ENST00000276201 MARCH10Q8NA82 808 aaPredicted RBP13.03□□□□□ -0.32
UPF3B-201ENST00000276201 OVOS2A0A0G2JMS6 1433 aa13.03□□□□□ -0.32
UPF3B-201ENST00000276201 EXOC5O00471 708 aa13.02□□□□□ -0.32
UPF3B-201ENST00000276201 SEC24BO95487 1268 aa13.02□□□□□ -0.33
UPF3B-201ENST00000276201 CCDC125Q86Z20 511 aa13.02□□□□□ -0.33
UPF3B-201ENST00000276201 WWC1Q8IX03 1113 aa13.02□□□□□ -0.33
UPF3B-201ENST00000276201 RGPD1P0DJD0 1748 aa13.01□□□□□ -0.33
UPF3B-201ENST00000276201 TNS1Q9HBL0 1735 aaKnown RBP13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms