RNA–Protein interactions for RNA: ENST00000269122.7

CLTC-201, Transcript of clathrin heavy chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLTC, Length 7,760 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLTC-201ENST00000269122 CCDC178Q5BJE1 867 aa9.34□□□□□ -0.91
CLTC-201ENST00000269122 CCDC148Q8NFR7 591 aa9.34□□□□□ -0.91
CLTC-201ENST00000269122 TERF1P54274 439 aa9.33□□□□□ -0.92
CLTC-201ENST00000269122 MCM6Q14566 821 aa9.33□□□□□ -0.92
CLTC-201ENST00000269122 GBP2P32456 591 aaPredicted RBP9.33□□□□□ -0.92
CLTC-201ENST00000269122 NUTM1Q86Y26 1132 aa9.33□□□□□ -0.92
CLTC-201ENST00000269122 MICALL1Q8N3F8 863 aa9.33□□□□□ -0.92
CLTC-201ENST00000269122 XBP1P17861 261 aa9.33□□□□□ -0.92
CLTC-201ENST00000269122 ATP2B2Q01814 1243 aa9.33□□□□□ -0.92
CLTC-201ENST00000269122 DHX8Q14562 1220 aaKnown RBP9.33□□□□□ -0.92
CLTC-201ENST00000269122 MCM2P49736 904 aa9.33□□□□□ -0.92
CLTC-201ENST00000269122 GIMAP6Q6P9H5 292 aa9.33□□□□□ -0.92
CLTC-201ENST00000269122 TMC6Q7Z403 805 aa9.33□□□□□ -0.92
CLTC-201ENST00000269122 SFPQP23246 707 aaKnown RBP eCLIP9.33□□□□□ -0.92
CLTC-201ENST00000269122 CCDC183Q5T5S1 534 aa9.33□□□□□ -0.92
CLTC-201ENST00000269122 TMEM132AQ24JP5 1023 aa9.32□□□□□ -0.92
CLTC-201ENST00000269122 TMEM132EQ6IEE7 984 aa9.32□□□□□ -0.92
CLTC-201ENST00000269122 TFIP11Q9UBB9 837 aaKnown RBP9.32□□□□□ -0.92
CLTC-201ENST00000269122 PPP2R1AP30153 589 aa9.32□□□□□ -0.92
CLTC-201ENST00000269122 EIF5P55010 431 aaKnown RBP9.32□□□□□ -0.92
CLTC-201ENST00000269122 CBFA2T2O43439 604 aa9.32□□□□□ -0.92
CLTC-201ENST00000269122 PUS7Q96PZ0 661 aaKnown RBP9.32□□□□□ -0.92
CLTC-201ENST00000269122 TTC12Q9H892 705 aaPredicted RBP9.32□□□□□ -0.92
CLTC-201ENST00000269122 SSBP05455 408 aaKnown RBP eCLIP9.32□□□□□ -0.92
CLTC-201ENST00000269122 DNAJC21Q5F1R6 531 aaKnown RBP9.32□□□□□ -0.92
CLTC-201ENST00000269122 GNAI1P63096 354 aa9.32□□□□□ -0.92
CLTC-201ENST00000269122 CEP57Q86XR8 500 aa9.32□□□□□ -0.92
CLTC-201ENST00000269122 CEP57L1Q8IYX8 460 aa9.32□□□□□ -0.92
CLTC-201ENST00000269122 NUTM2BA6NNL0 878 aaPredicted RBP9.32□□□□□ -0.92
CLTC-201ENST00000269122 NUTM2EB1AL46 878 aaPredicted RBP9.32□□□□□ -0.92
CLTC-201ENST00000269122 SLC4A2P04920 1241 aa9.32□□□□□ -0.92
CLTC-201ENST00000269122 FAM160A1Q05DH4 1040 aa9.32□□□□□ -0.92
CLTC-201ENST00000269122 IFFO1Q0D2I5 559 aa9.32□□□□□ -0.92
CLTC-201ENST00000269122 NUTM2AQ8IVF1 878 aaPredicted RBP9.32□□□□□ -0.92
CLTC-201ENST00000269122 TXLNAP40222 546 aa9.31□□□□□ -0.92
CLTC-201ENST00000269122 FKBP4Q02790 459 aaKnown RBP eCLIP9.31□□□□□ -0.92
CLTC-201ENST00000269122 HCLS1P14317 486 aaPredicted RBP9.31□□□□□ -0.92
CLTC-201ENST00000269122 MVPQ14764 893 aaKnown RBP9.31□□□□□ -0.92
CLTC-201ENST00000269122 NBPF1Q3BBV0 1214 aa9.31□□□□□ -0.92
CLTC-201ENST00000269122 CARMIL2Q6F5E8 1435 aa9.31□□□□□ -0.92
CLTC-201ENST00000269122 SMG6Q86US8 1419 aaKnown RBP9.31□□□□□ -0.92
CLTC-201ENST00000269122 GTF3C6Q969F1 213 aa9.31□□□□□ -0.92
CLTC-201ENST00000269122 RRAGDQ9NQL2 400 aaPredicted RBP9.31□□□□□ -0.92
CLTC-201ENST00000269122 TMCO5BA8MYB1 307 aa9.31□□□□□ -0.92
CLTC-201ENST00000269122 KIF5CO60282 957 aa9.31□□□□□ -0.92
CLTC-201ENST00000269122 DDX58O95786 925 aaKnown RBP9.31□□□□□ -0.92
CLTC-201ENST00000269122 TWISTNBQ3B726 338 aaPredicted RBP9.31□□□□□ -0.92
CLTC-201ENST00000269122 CERS3Q8IU89 383 aa9.31□□□□□ -0.92
CLTC-201ENST00000269122 RABEP2Q9H5N1 569 aa9.31□□□□□ -0.92
CLTC-201ENST00000269122 BRD4O60885 1362 aaPredicted RBP9.31□□□□□ -0.92
CLTC-201ENST00000269122 GNAI2P04899 355 aa9.31□□□□□ -0.92
CLTC-201ENST00000269122 SNW1Q13573 536 aaKnown RBP9.31□□□□□ -0.92
CLTC-201ENST00000269122 TSHZ3Q63HK5 1081 aa9.31□□□□□ -0.92
CLTC-201ENST00000269122 TMEM57Q8N5G2 664 aa9.31□□□□□ -0.92
CLTC-201ENST00000269122 SCLT1Q96NL6 688 aa9.31□□□□□ -0.92
CLTC-201ENST00000269122 CCDC82Q8N4S0 544 aa9.3□□□□□ -0.92
CLTC-201ENST00000269122 SMARCC1Q92922 1105 aaPredicted RBP9.3□□□□□ -0.92
CLTC-201ENST00000269122 PHACTR2O75167 634 aa9.3□□□□□ -0.92
CLTC-201ENST00000269122 STRN4Q9NRL3 753 aa9.3□□□□□ -0.92
CLTC-201ENST00000269122 TOP1P11387 765 aaKnown RBP9.3□□□□□ -0.92
CLTC-201ENST00000269122 GCC1Q96CN9 775 aa9.3□□□□□ -0.92
CLTC-201ENST00000269122 MIS18AQ9NYP9 233 aa9.3□□□□□ -0.92
CLTC-201ENST00000269122 EXOC6BQ9Y2D4 811 aa9.3□□□□□ -0.92
CLTC-201ENST00000269122 PRKAR2BP31323 418 aa9.3□□□□□ -0.92
CLTC-201ENST00000269122 CEP63Q96MT8 703 aa9.3□□□□□ -0.92
CLTC-201ENST00000269122 CCDC160A6NGH7 325 aa9.29□□□□□ -0.92
CLTC-201ENST00000269122 HLTFQ14527 1009 aaKnown RBP eCLIP9.29□□□□□ -0.92
CLTC-201ENST00000269122 TTC39AQ5SRH9 613 aa9.29□□□□□ -0.92
CLTC-201ENST00000269122 MYL6BP14649 208 aa9.29□□□□□ -0.92
CLTC-201ENST00000269122 MAATS1Q7Z4T9 603 aa9.29□□□□□ -0.92
CLTC-201ENST00000269122 KRT222Q8N1A0 295 aa9.29□□□□□ -0.92
CLTC-201ENST00000269122 NUP88Q99567 741 aaPredicted RBP9.29□□□□□ -0.92
CLTC-201ENST00000269122 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP9.29□□□□□ -0.92
CLTC-201ENST00000269122 IQCEQ6IPM2 695 aa9.29□□□□□ -0.92
CLTC-201ENST00000269122 CCDC69A6NI79 296 aa9.29□□□□□ -0.92
CLTC-201ENST00000269122 BLOC1S2Q6QNY1 142 aa9.29□□□□□ -0.92
CLTC-201ENST00000269122 SLC26A8Q96RN1 970 aa9.29□□□□□ -0.92
CLTC-201ENST00000269122 TMCO4Q5TGY1 634 aa9.29□□□□□ -0.92
CLTC-201ENST00000269122 PAF1Q8N7H5 531 aa9.29□□□□□ -0.92
CLTC-201ENST00000269122 TTC16Q8NEE8 873 aa9.29□□□□□ -0.92
CLTC-201ENST00000269122 DRC1Q96MC2 740 aa9.29□□□□□ -0.92
CLTC-201ENST00000269122 SF3A3Q12874 501 aaKnown RBP eCLIP9.28□□□□□ -0.925e-7■□□□□ 10.9
CLTC-201ENST00000269122 NOLC1Q14978 699 aaKnown RBP eCLIP9.28□□□□□ -0.927e-7■■■□□ 14.7
CLTC-201ENST00000269122 KRBA2Q6ZNG9 492 aa9.28□□□□□ -0.92
CLTC-201ENST00000269122 AACSQ86V21 672 aa9.28□□□□□ -0.92
CLTC-201ENST00000269122 CCDC85AQ96PX6 553 aaPredicted RBP9.28□□□□□ -0.92
CLTC-201ENST00000269122 TTC31Q49AM3 519 aaPredicted RBP9.28□□□□□ -0.92
CLTC-201ENST00000269122 PNISRQ8TF01 805 aaKnown RBP9.28□□□□□ -0.92
CLTC-201ENST00000269122 VPS18Q9P253 973 aa9.28□□□□□ -0.92
CLTC-201ENST00000269122 ZNF644Q9H582 1327 aaPredicted RBP9.28□□□□□ -0.92
CLTC-201ENST00000269122 SMTNL1A8MU46 457 aa9.28□□□□□ -0.92
CLTC-201ENST00000269122 U2AF2P26368 475 aaKnown RBP eCLIP9.28□□□□□ -0.922e-7■■■■□ 26.7
CLTC-201ENST00000269122 CLCN1P35523 988 aa9.28□□□□□ -0.92
CLTC-201ENST00000269122 DACH1Q9UI36 760 aa9.28□□□□□ -0.92
CLTC-201ENST00000269122 CCT2P78371 535 aaKnown RBP9.28□□□□□ -0.92
CLTC-201ENST00000269122 HSP90AB4PQ58FF6 505 aa9.28□□□□□ -0.92
CLTC-201ENST00000269122 SPECC1Q5M775 1068 aa9.28□□□□□ -0.92
CLTC-201ENST00000269122 LUZP1Q86V48 1076 aa9.28□□□□□ -0.92
CLTC-201ENST00000269122 RAB11FIP4Q86YS3 637 aa9.28□□□□□ -0.92
CLTC-201ENST00000269122 BAG4O95429 457 aaKnown RBP9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms