RNA–Protein interactions for RNA: ENST00000266085.6

TIMP3-201, Transcript of TIMP metallopeptidase inhibitor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TIMP3, Length 4,603 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP3-201ENST00000266085 TRIM27P14373 513 aa18.45■□□□□ 0.54
TIMP3-201ENST00000266085 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.45■□□□□ 0.54
TIMP3-201ENST00000266085 TPM2P07951 284 aa18.45■□□□□ 0.54
TIMP3-201ENST00000266085 DBF4Q9UBU7 674 aaPredicted RBP18.45■□□□□ 0.54
TIMP3-201ENST00000266085 NOC3LQ8WTT2 800 aaKnown RBP18.45■□□□□ 0.54
TIMP3-201ENST00000266085 XBP1P17861 261 aa18.45■□□□□ 0.54
TIMP3-201ENST00000266085 ANKRD20A12PQ8NF67 263 aa18.45■□□□□ 0.54
TIMP3-201ENST00000266085 ZRANB1Q9UGI0 708 aa18.45■□□□□ 0.54
TIMP3-201ENST00000266085 SF3B2Q13435 895 aaKnown RBP18.44■□□□□ 0.54
TIMP3-201ENST00000266085 TTC21AQ8NDW8 1320 aa18.44■□□□□ 0.54
TIMP3-201ENST00000266085 ARID3AQ99856 593 aa18.44■□□□□ 0.54
TIMP3-201ENST00000266085 CFAP43Q8NDM7 1665 aa18.44■□□□□ 0.54
TIMP3-201ENST00000266085 IFNL2Q8IZJ0 200 aa18.43■□□□□ 0.54
TIMP3-201ENST00000266085 DNAAF4Q8WXU2 420 aa18.43■□□□□ 0.54
TIMP3-201ENST00000266085 MYD88Q99836 296 aa18.43■□□□□ 0.54
TIMP3-201ENST00000266085 EXOC5O00471 708 aa18.43■□□□□ 0.54
TIMP3-201ENST00000266085 FLIIQ13045 1269 aa18.43■□□□□ 0.54
TIMP3-201ENST00000266085 NUTM1Q86Y26 1132 aa18.43■□□□□ 0.54
TIMP3-201ENST00000266085 MBIPQ9NS73 344 aa18.43■□□□□ 0.54
TIMP3-201ENST00000266085 CYP46A1Q9Y6A2 500 aa18.43■□□□□ 0.54
TIMP3-201ENST00000266085 PPIP5K1Q6PFW1 1433 aa18.43■□□□□ 0.54
TIMP3-201ENST00000266085 KDM4AO75164 1064 aa18.43■□□□□ 0.54
TIMP3-201ENST00000266085 TCEAL9Q9UHQ7 104 aa18.43■□□□□ 0.54
TIMP3-201ENST00000266085 ABCA5Q8WWZ7 1642 aa18.43■□□□□ 0.54
TIMP3-201ENST00000266085 KIF1BPQ96EK5 621 aa18.43■□□□□ 0.54
TIMP3-201ENST00000266085 SDF4Q9BRK5 362 aa18.42■□□□□ 0.54
TIMP3-201ENST00000266085 MBD3O95983 291 aa18.42■□□□□ 0.54
TIMP3-201ENST00000266085 NCBP3Q53F19 620 aaKnown RBP18.42■□□□□ 0.54
TIMP3-201ENST00000266085 FMNL2Q96PY5 1086 aa18.42■□□□□ 0.54
TIMP3-201ENST00000266085 CEP89Q96ST8 783 aa18.42■□□□□ 0.54
TIMP3-201ENST00000266085 PPP1R1BQ9UD71 204 aaPredicted RBP18.42■□□□□ 0.54
TIMP3-201ENST00000266085 BRMS1Q9HCU9 246 aa18.42■□□□□ 0.54
TIMP3-201ENST00000266085 MSH6P52701 1360 aa18.41■□□□□ 0.54
TIMP3-201ENST00000266085 TRAK2O60296 914 aa18.41■□□□□ 0.54
TIMP3-201ENST00000266085 CWC27Q6UX04 472 aaKnown RBP18.41■□□□□ 0.54
TIMP3-201ENST00000266085 SKAP1Q86WV1 359 aa18.41■□□□□ 0.54
TIMP3-201ENST00000266085 POLKQ9UBT6 870 aa18.41■□□□□ 0.54
TIMP3-201ENST00000266085 HSPA2P54652 639 aa18.41■□□□□ 0.54
TIMP3-201ENST00000266085 KCNA6P17658 529 aa18.41■□□□□ 0.54
TIMP3-201ENST00000266085 SMARCA5O60264 1052 aaPredicted RBP18.4■□□□□ 0.54
TIMP3-201ENST00000266085 NPHP3Q7Z494 1330 aa18.4■□□□□ 0.54
TIMP3-201ENST00000266085 PUS7Q96PZ0 661 aaKnown RBP18.4■□□□□ 0.54
TIMP3-201ENST00000266085 CARD14Q9BXL6 1004 aa18.4■□□□□ 0.54
TIMP3-201ENST00000266085 PZPP20742 1482 aa18.4■□□□□ 0.54
TIMP3-201ENST00000266085 AEBP1Q8IUX7 1158 aa18.4■□□□□ 0.54
TIMP3-201ENST00000266085 IPO7O95373 1038 aaKnown RBP18.39■□□□□ 0.53
TIMP3-201ENST00000266085 ATP2B1P20020 1258 aa18.39■□□□□ 0.53
TIMP3-201ENST00000266085 HYPKQ9NX55 129 aa18.39■□□□□ 0.53
TIMP3-201ENST00000266085 LRRFIP2Q9Y608 721 aaKnown RBP18.39■□□□□ 0.53
TIMP3-201ENST00000266085 CEP170Q5SW79 1584 aa18.39■□□□□ 0.53
TIMP3-201ENST00000266085 K7ELQ4 463 aaPredicted RBP18.39■□□□□ 0.53
TIMP3-201ENST00000266085 ANKRD1Q15327 319 aa18.39■□□□□ 0.53
TIMP3-201ENST00000266085 NACAP1Q9BZK3 213 aa18.39■□□□□ 0.53
TIMP3-201ENST00000266085 ASXL1Q8IXJ9 1541 aa18.39■□□□□ 0.53
TIMP3-201ENST00000266085 SLC3A2P08195 630 aaKnown RBP18.38■□□□□ 0.53
TIMP3-201ENST00000266085 CWC22Q9HCG8 908 aaKnown RBP18.38■□□□□ 0.53
TIMP3-201ENST00000266085 NCKAP5LQ9HCH0 1330 aa18.38■□□□□ 0.53
TIMP3-201ENST00000266085 IGHMBP2P38935 993 aaKnown RBP18.38■□□□□ 0.53
TIMP3-201ENST00000266085 STK11IPQ8N1F8 1099 aa18.38■□□□□ 0.53
TIMP3-201ENST00000266085 IL16Q14005 1332 aa18.38■□□□□ 0.53
TIMP3-201ENST00000266085 ANXA1P04083 346 aa18.38■□□□□ 0.53
TIMP3-201ENST00000266085 MX1P20591 662 aa18.38■□□□□ 0.53
TIMP3-201ENST00000266085 PBRM1Q86U86 1689 aa18.37■□□□□ 0.53
TIMP3-201ENST00000266085 METTL24Q5JXM2 366 aa18.37■□□□□ 0.53
TIMP3-201ENST00000266085 MRE11P49959 708 aa18.37■□□□□ 0.53
TIMP3-201ENST00000266085 ZBTB3Q9H5J0 574 aa18.37■□□□□ 0.53
TIMP3-201ENST00000266085 TBX22Q9Y458 520 aa18.37■□□□□ 0.53
TIMP3-201ENST00000266085 A0A087WZG4 1122 aa18.37■□□□□ 0.53
TIMP3-201ENST00000266085 GLRX3O76003 335 aaKnown RBP18.37■□□□□ 0.53
TIMP3-201ENST00000266085 EIF4A2Q14240 407 aaKnown RBP18.37■□□□□ 0.53
TIMP3-201ENST00000266085 C19orf44Q9H6X5 657 aa18.37■□□□□ 0.53
TIMP3-201ENST00000266085 IKQ13123 557 aaPredicted RBP18.37■□□□□ 0.53
TIMP3-201ENST00000266085 ZSCAN25Q6NSZ9 544 aa18.37■□□□□ 0.53
TIMP3-201ENST00000266085 CAVIN1Q6NZI2 390 aaKnown RBP18.37■□□□□ 0.53
TIMP3-201ENST00000266085 BLOC1S2Q6QNY1 142 aa18.37■□□□□ 0.53
TIMP3-201ENST00000266085 ZNF652Q9Y2D9 606 aa18.37■□□□□ 0.53
TIMP3-201ENST00000266085 FIBPO43427 364 aa18.36■□□□□ 0.53
TIMP3-201ENST00000266085 PRPF40AO75400 957 aaKnown RBP18.36■□□□□ 0.53
TIMP3-201ENST00000266085 IDH1O75874 414 aaKnown RBP18.36■□□□□ 0.53
TIMP3-201ENST00000266085 PCMTD1Q96MG8 357 aaPredicted RBP18.36■□□□□ 0.53
TIMP3-201ENST00000266085 SPINK5Q9NQ38 1064 aaPredicted RBP18.36■□□□□ 0.53
TIMP3-201ENST00000266085 PTPRCP08575 1304 aa18.36■□□□□ 0.53
TIMP3-201ENST00000266085 PARD3Q8TEW0 1356 aa18.36■□□□□ 0.53
TIMP3-201ENST00000266085 PI4KAP2A4QPH2 592 aa18.36■□□□□ 0.53
TIMP3-201ENST00000266085 PI4KAP1Q8N8J0 262 aa18.36■□□□□ 0.53
TIMP3-201ENST00000266085 STK3Q13188 491 aa18.36■□□□□ 0.53
TIMP3-201ENST00000266085 RAB11FIP3O75154 756 aa18.35■□□□□ 0.53
TIMP3-201ENST00000266085 RNF214Q8ND24 703 aa18.35■□□□□ 0.53
TIMP3-201ENST00000266085 DNMT1P26358 1616 aaKnown RBP18.35■□□□□ 0.53
TIMP3-201ENST00000266085 CABLES1Q8TDN4 633 aa18.35■□□□□ 0.53
TIMP3-201ENST00000266085 LRP2BPQ9P2M1 347 aa18.34■□□□□ 0.53
TIMP3-201ENST00000266085 KINO60870 393 aaKnown RBP18.34■□□□□ 0.53
TIMP3-201ENST00000266085 BOLA2Q9H3K6 86 aa18.34■□□□□ 0.53
TIMP3-201ENST00000266085 ABCF2Q9UG63 623 aa18.34■□□□□ 0.53
TIMP3-201ENST00000266085 TRMT112Q9UI30 125 aaKnown RBP18.34■□□□□ 0.53
TIMP3-201ENST00000266085 NASPP49321 788 aaPredicted RBP18.34■□□□□ 0.53
TIMP3-201ENST00000266085 ZPR1O75312 459 aa18.34■□□□□ 0.53
TIMP3-201ENST00000266085 RAI14Q9P0K7 980 aa18.34■□□□□ 0.53
TIMP3-201ENST00000266085 GPTP24298 496 aa18.33■□□□□ 0.53
TIMP3-201ENST00000266085 CCAR2Q8N163 923 aaKnown RBP18.33■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms