RNA–Protein interactions for RNA: ENST00000264883.7

NUP54-201, Transcript of nucleoporin 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP54, Length 2,367 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-201ENST00000264883 CFAP44Q96MT7 982 aa16.11■□□□□ 0.17
NUP54-201ENST00000264883 PRAM1Q96QH2 718 aa16.11■□□□□ 0.17
NUP54-201ENST00000264883 TRIM35Q9UPQ4 493 aa16.11■□□□□ 0.17
NUP54-201ENST00000264883 SETD1BQ9UPS6 1966 aaKnown RBP16.11■□□□□ 0.17
NUP54-201ENST00000264883 ATAD2Q6PL18 1390 aa16.1■□□□□ 0.17
NUP54-201ENST00000264883 BMP2KLQ5H9B9 411 aa16.1■□□□□ 0.17
NUP54-201ENST00000264883 PPIP5K1Q6PFW1 1433 aa16.1■□□□□ 0.17
NUP54-201ENST00000264883 PLPPR3Q6T4P5 718 aa16.09■□□□□ 0.17
NUP54-201ENST00000264883 JARID2Q92833 1246 aaPredicted RBP16.09■□□□□ 0.17
NUP54-201ENST00000264883 TSR2Q969E8 191 aaKnown RBP16.09■□□□□ 0.17
NUP54-201ENST00000264883 PRIMPOLQ96LW4 560 aa16.09■□□□□ 0.17
NUP54-201ENST00000264883 RBM42Q9BTD8 480 aaKnown RBP16.09■□□□□ 0.17
NUP54-201ENST00000264883 NAP1L2Q9ULW6 460 aaPredicted RBP16.09■□□□□ 0.17
NUP54-201ENST00000264883 NUCB2P80303 420 aa16.09■□□□□ 0.17
NUP54-201ENST00000264883 GCC1Q96CN9 775 aa16.09■□□□□ 0.17
NUP54-201ENST00000264883 NOB1Q9ULX3 412 aaKnown RBP16.09■□□□□ 0.17
NUP54-201ENST00000264883 HMGN5P82970 282 aaKnown RBP16.08■□□□□ 0.17
NUP54-201ENST00000264883 ATP2B3Q16720 1220 aa16.08■□□□□ 0.17
NUP54-201ENST00000264883 ZNF142P52746 1687 aaPredicted RBP16.08■□□□□ 0.16
NUP54-201ENST00000264883 PTMAP06454 111 aaKnown RBP16.08■□□□□ 0.16
NUP54-201ENST00000264883 LRSAM1Q6UWE0 723 aa16.08■□□□□ 0.16
NUP54-201ENST00000264883 THEMISQ8N1K5 641 aaPredicted RBP16.08■□□□□ 0.16
NUP54-201ENST00000264883 TMEM57Q8N5G2 664 aa16.08■□□□□ 0.16
NUP54-201ENST00000264883 TSC1Q92574 1164 aa16.08■□□□□ 0.16
NUP54-201ENST00000264883 RBM27Q9P2N5 1060 aaKnown RBP16.08■□□□□ 0.16
NUP54-201ENST00000264883 A0A1W2PP64 1363 aa16.07■□□□□ 0.16
NUP54-201ENST00000264883 TXNDC2Q86VQ3 553 aa16.07■□□□□ 0.16
NUP54-201ENST00000264883 CHD1LQ86WJ1 897 aa16.07■□□□□ 0.16
NUP54-201ENST00000264883 CPS1P31327 1500 aa16.07■□□□□ 0.16
NUP54-201ENST00000264883 GTF2F1P35269 517 aaKnown RBP eCLIP16.07■□□□□ 0.16
NUP54-201ENST00000264883 SAFB2Q14151 953 aaKnown RBP eCLIP16.07■□□□□ 0.16
NUP54-201ENST00000264883 PNPLA6Q8IY17 1366 aa16.06■□□□□ 0.16
NUP54-201ENST00000264883 ZBTB7CA1YPR0 619 aa16.06■□□□□ 0.16
NUP54-201ENST00000264883 FAM135BQ49AJ0 1406 aa16.06■□□□□ 0.16
NUP54-201ENST00000264883 ARHGAP45Q92619 1136 aa16.06■□□□□ 0.16
NUP54-201ENST00000264883 SIRT1Q96EB6 747 aa16.06■□□□□ 0.16
NUP54-201ENST00000264883 TMEM51Q9NW97 253 aa16.06■□□□□ 0.16
NUP54-201ENST00000264883 TERF2IPQ9NYB0 399 aa16.06■□□□□ 0.16
NUP54-201ENST00000264883 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.06■□□□□ 0.169e-6■□□□□ 11.3
NUP54-201ENST00000264883 KDM4FA0A1W2PPD8 638 aa16.06■□□□□ 0.16
NUP54-201ENST00000264883 U2SURPO15042 1029 aaKnown RBP16.06■□□□□ 0.16
NUP54-201ENST00000264883 PRPF40AO75400 957 aaKnown RBP16.06■□□□□ 0.16
NUP54-201ENST00000264883 TAF3Q5VWG9 929 aa16.06■□□□□ 0.16
NUP54-201ENST00000264883 GPT2Q8TD30 523 aa16.06■□□□□ 0.16
NUP54-201ENST00000264883 LNPKQ9C0E8 428 aa16.06■□□□□ 0.16
NUP54-201ENST00000264883 EID1Q9Y6B2 187 aa16.06■□□□□ 0.16
NUP54-201ENST00000264883 PIK3R4Q99570 1358 aa16.05■□□□□ 0.16
NUP54-201ENST00000264883 SYCE3A1L190 88 aa16.05■□□□□ 0.16
NUP54-201ENST00000264883 PDIA4P13667 645 aaKnown RBP16.05■□□□□ 0.16
NUP54-201ENST00000264883 CYP2E1P05181 493 aaPredicted RBP16.04■□□□□ 0.16
NUP54-201ENST00000264883 MINK1Q8N4C8 1332 aaPredicted RBP16.04■□□□□ 0.16
NUP54-201ENST00000264883 DIAPH1O60610 1272 aaKnown RBP16.04■□□□□ 0.16
NUP54-201ENST00000264883 CABP2Q9NPB3 220 aa16.04■□□□□ 0.16
NUP54-201ENST00000264883 KIF3AQ9Y496 699 aa16.04■□□□□ 0.16
NUP54-201ENST00000264883 PTCH1Q13635 1447 aa16.03■□□□□ 0.16
NUP54-201ENST00000264883 FCHSD2O94868 740 aa16.03■□□□□ 0.16
NUP54-201ENST00000264883 WAPLQ7Z5K2 1190 aa16.03■□□□□ 0.16
NUP54-201ENST00000264883 DIP2AQ14689 1571 aa16.03■□□□□ 0.16
NUP54-201ENST00000264883 RNF214Q8ND24 703 aa16.02■□□□□ 0.16
NUP54-201ENST00000264883 TMEM63CQ9P1W3 806 aa16.02■□□□□ 0.16
NUP54-201ENST00000264883 KIF20BQ96Q89 1820 aa16.02■□□□□ 0.16
NUP54-201ENST00000264883 SPDYE4A6NLX3 237 aa16.01■□□□□ 0.15
NUP54-201ENST00000264883 TBC1D9Q6ZT07 1266 aa16.01■□□□□ 0.15
NUP54-201ENST00000264883 IPO4Q8TEX9 1081 aaKnown RBP16.01■□□□□ 0.15
NUP54-201ENST00000264883 PKP1Q13835 747 aa16.01■□□□□ 0.15
NUP54-201ENST00000264883 PIBF1Q8WXW3 757 aa16.01■□□□□ 0.15
NUP54-201ENST00000264883 TBX22Q9Y458 520 aa16.01■□□□□ 0.15
NUP54-201ENST00000264883 PTPRUQ92729 1446 aa16■□□□□ 0.15
NUP54-201ENST00000264883 PDCL2Q8N4E4 241 aa16■□□□□ 0.15
NUP54-201ENST00000264883 KIF24Q5T7B8 1368 aa16■□□□□ 0.15
NUP54-201ENST00000264883 ROBO2Q9HCK4 1378 aa16■□□□□ 0.15
NUP54-201ENST00000264883 FAM177BA6PVY3 158 aa16■□□□□ 0.15
NUP54-201ENST00000264883 NOLC1Q14978 699 aaKnown RBP eCLIP16■□□□□ 0.15
NUP54-201ENST00000264883 LRRC7Q96NW7 1537 aa16■□□□□ 0.15
NUP54-201ENST00000264883 SRPK2P78362 688 aaKnown RBP15.99■□□□□ 0.15
NUP54-201ENST00000264883 CDK19Q9BWU1 502 aa15.99■□□□□ 0.15
NUP54-201ENST00000264883 BCL2L12Q9HB09 334 aa15.99■□□□□ 0.15
NUP54-201ENST00000264883 FYB1O15117 783 aa15.99■□□□□ 0.15
NUP54-201ENST00000264883 RABEP1Q15276 862 aa15.99■□□□□ 0.15
NUP54-201ENST00000264883 HDGFL2Q7Z4V5 671 aaPredicted RBP15.99■□□□□ 0.15
NUP54-201ENST00000264883 CD163L1Q9NR16 1453 aa15.99■□□□□ 0.15
NUP54-201ENST00000264883 ZBTB7BO15156 539 aaPredicted RBP15.98■□□□□ 0.15
NUP54-201ENST00000264883 SLC26A8Q96RN1 970 aa15.98■□□□□ 0.15
NUP54-201ENST00000264883 CWC22Q9HCG8 908 aaKnown RBP15.98■□□□□ 0.15
NUP54-201ENST00000264883 GGNBP2Q9H3C7 697 aa15.98■□□□□ 0.15
NUP54-201ENST00000264883 CGNQ9P2M7 1197 aaKnown RBP15.97■□□□□ 0.15
NUP54-201ENST00000264883 CDC45O75419 566 aa15.97■□□□□ 0.15
NUP54-201ENST00000264883 TSPY26PQ9H489 355 aa15.97■□□□□ 0.15
NUP54-201ENST00000264883 NSFL1CQ9UNZ2 370 aaKnown RBP15.97■□□□□ 0.15
NUP54-201ENST00000264883 XRN1Q8IZH2 1706 aaKnown RBP15.96■□□□□ 0.15
NUP54-201ENST00000264883 IGSF3O75054 1194 aa15.96■□□□□ 0.15
NUP54-201ENST00000264883 ZNF771Q7L3S4 317 aaPredicted RBP15.96■□□□□ 0.15
NUP54-201ENST00000264883 ABCC4O15439 1325 aa15.96■□□□□ 0.15
NUP54-201ENST00000264883 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.96■□□□□ 0.14
NUP54-201ENST00000264883 MBD3O95983 291 aa15.95■□□□□ 0.14
NUP54-201ENST00000264883 GNAI1P63096 354 aa15.95■□□□□ 0.14
NUP54-201ENST00000264883 ANKRD45Q5TZF3 282 aa15.95■□□□□ 0.14
NUP54-201ENST00000264883 ZNF830Q96NB3 372 aaPredicted RBP15.95■□□□□ 0.14
NUP54-201ENST00000264883 WASLO00401 505 aaPredicted RBP15.95■□□□□ 0.14
NUP54-201ENST00000264883 MRPL50Q8N5N7 158 aaKnown RBP15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms