RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 ANAPC4Q9UJX5 808 aa16.24■□□□□ 0.19
CCDC88A-201ENST00000263630 MRPS9P82933 396 aaKnown RBP16.23■□□□□ 0.19
CCDC88A-201ENST00000263630 TMCO5BA8MYB1 307 aa16.23■□□□□ 0.19
CCDC88A-201ENST00000263630 IPO4Q8TEX9 1081 aaKnown RBP16.23■□□□□ 0.19
CCDC88A-201ENST00000263630 DNAJC2Q99543 621 aaKnown RBP16.23■□□□□ 0.19
CCDC88A-201ENST00000263630 MKRN1Q9UHC7 482 aaKnown RBP16.23■□□□□ 0.19
CCDC88A-201ENST00000263630 CEP135Q66GS9 1140 aa16.23■□□□□ 0.19
CCDC88A-201ENST00000263630 ZNF287Q9HBT7 754 aa16.23■□□□□ 0.19
CCDC88A-201ENST00000263630 CCDC160A6NGH7 325 aa16.23■□□□□ 0.19
CCDC88A-201ENST00000263630 CFAP100Q494V2 611 aa16.23■□□□□ 0.19
CCDC88A-201ENST00000263630 WDHD1O75717 1129 aaPredicted RBP16.22■□□□□ 0.19
CCDC88A-201ENST00000263630 CCDC30Q5VVM6 783 aa16.22■□□□□ 0.19
CCDC88A-201ENST00000263630 TRAK1Q9UPV9 953 aa16.22■□□□□ 0.19
CCDC88A-201ENST00000263630 HSPA4P34932 840 aa16.22■□□□□ 0.19
CCDC88A-201ENST00000263630 CTR9Q6PD62 1173 aa16.22■□□□□ 0.19
CCDC88A-201ENST00000263630 ALS2CR12Q96Q35 445 aa16.22■□□□□ 0.19
CCDC88A-201ENST00000263630 NSRP1Q9H0G5 558 aaKnown RBP16.22■□□□□ 0.19
CCDC88A-201ENST00000263630 CETN1Q12798 172 aa16.22■□□□□ 0.19
CCDC88A-201ENST00000263630 SPATA32Q96LK8 384 aa16.22■□□□□ 0.19
CCDC88A-201ENST00000263630 CNNM1Q9NRU3 951 aa16.22■□□□□ 0.19
CCDC88A-201ENST00000263630 VGFO15240 615 aaPredicted RBP16.22■□□□□ 0.19
CCDC88A-201ENST00000263630 PHF23Q9BUL5 403 aaPredicted RBP16.22■□□□□ 0.19
CCDC88A-201ENST00000263630 NUP62CLQ9H1M0 184 aa16.22■□□□□ 0.19
CCDC88A-201ENST00000263630 SFPQP23246 707 aaKnown RBP eCLIP16.21■□□□□ 0.19
CCDC88A-201ENST00000263630 SMG6Q86US8 1419 aaKnown RBP16.21■□□□□ 0.19
CCDC88A-201ENST00000263630 CLGNO14967 610 aa16.21■□□□□ 0.19
CCDC88A-201ENST00000263630 HMGB1P09429 215 aaKnown RBP16.21■□□□□ 0.19
CCDC88A-201ENST00000263630 CEP112Q8N8E3 955 aa16.21■□□□□ 0.19
CCDC88A-201ENST00000263630 ANKS4BQ8N8V4 417 aa16.21■□□□□ 0.19
CCDC88A-201ENST00000263630 RAB3GAP2Q9H2M9 1393 aa16.21■□□□□ 0.19
CCDC88A-201ENST00000263630 HMGB2P26583 209 aaKnown RBP16.21■□□□□ 0.18
CCDC88A-201ENST00000263630 AIMP1Q12904 312 aaKnown RBP16.2■□□□□ 0.18
CCDC88A-201ENST00000263630 SETSIPP0DME0 302 aa16.2■□□□□ 0.18
CCDC88A-201ENST00000263630 RAB34Q9BZG1 259 aa16.2■□□□□ 0.18
CCDC88A-201ENST00000263630 KIF20AO95235 890 aa16.2■□□□□ 0.18
CCDC88A-201ENST00000263630 LARP1BQ659C4 914 aaKnown RBP16.2■□□□□ 0.18
CCDC88A-201ENST00000263630 GRPEL1Q9HAV7 217 aa16.2■□□□□ 0.18
CCDC88A-201ENST00000263630 SEC63Q9UGP8 760 aaKnown RBP16.2■□□□□ 0.18
CCDC88A-201ENST00000263630 ACTN2P35609 894 aa16.19■□□□□ 0.18
CCDC88A-201ENST00000263630 SMARCC1Q92922 1105 aaPredicted RBP16.19■□□□□ 0.18
CCDC88A-201ENST00000263630 MNAT1P51948 309 aa16.19■□□□□ 0.18
CCDC88A-201ENST00000263630 MAP7D1Q3KQU3 841 aa16.19■□□□□ 0.18
CCDC88A-201ENST00000263630 MAPK8IP2Q13387 824 aaPredicted RBP16.19■□□□□ 0.18
CCDC88A-201ENST00000263630 DNAAF4Q8WXU2 420 aa16.19■□□□□ 0.18
CCDC88A-201ENST00000263630 PLVAPQ9BX97 442 aa16.19■□□□□ 0.18
CCDC88A-201ENST00000263630 CTNNA3Q9UI47 895 aa16.19■□□□□ 0.18
CCDC88A-201ENST00000263630 UBAC1Q9BSL1 405 aa16.19■□□□□ 0.18
CCDC88A-201ENST00000263630 A0A1W2PRG0 241 aa16.18■□□□□ 0.18
CCDC88A-201ENST00000263630 KRT32Q14532 448 aa16.18■□□□□ 0.18
CCDC88A-201ENST00000263630 RAI14Q9P0K7 980 aa16.18■□□□□ 0.18
CCDC88A-201ENST00000263630 CCDC155Q8N6L0 562 aa16.18■□□□□ 0.18
CCDC88A-201ENST00000263630 SCLT1Q96NL6 688 aa16.18■□□□□ 0.18
CCDC88A-201ENST00000263630 SRCIN1Q9C0H9 1055 aa16.18■□□□□ 0.18
CCDC88A-201ENST00000263630 LMAN1P49257 510 aa16.18■□□□□ 0.18
CCDC88A-201ENST00000263630 IFI16Q16666 785 aaKnown RBP16.18■□□□□ 0.18
CCDC88A-201ENST00000263630 KIF4BQ2VIQ3 1234 aa16.18■□□□□ 0.18
CCDC88A-201ENST00000263630 MACROD2A1Z1Q3 448 aa16.17■□□□□ 0.18
CCDC88A-201ENST00000263630 HLTFQ14527 1009 aaKnown RBP eCLIP16.17■□□□□ 0.181e-6■□□□□ 9
CCDC88A-201ENST00000263630 PSMD1Q99460 953 aa16.17■□□□□ 0.18
CCDC88A-201ENST00000263630 CEP83Q9Y592 693 aa16.17■□□□□ 0.18
CCDC88A-201ENST00000263630 MAP3K11Q16584 847 aa16.17■□□□□ 0.18
CCDC88A-201ENST00000263630 NUP133Q8WUM0 1156 aa16.17■□□□□ 0.18
CCDC88A-201ENST00000263630 GOLGA6L9A6NEM1 432 aa16.17■□□□□ 0.18
CCDC88A-201ENST00000263630 PHAXQ9H814 394 aaKnown RBP16.17■□□□□ 0.18
CCDC88A-201ENST00000263630 BAZ1AQ9NRL2 1556 aaPredicted RBP16.17■□□□□ 0.18
CCDC88A-201ENST00000263630 KIF4AO95239 1232 aa16.17■□□□□ 0.18
CCDC88A-201ENST00000263630 IQCGQ9H095 443 aaKnown RBP16.17■□□□□ 0.18
CCDC88A-201ENST00000263630 STMN4Q9H169 189 aaPredicted RBP16.17■□□□□ 0.18
CCDC88A-201ENST00000263630 RBM5P52756 815 aaKnown RBP eCLIP16.16■□□□□ 0.18
CCDC88A-201ENST00000263630 PPP1R9BQ96SB3 815 aa16.16■□□□□ 0.18
CCDC88A-201ENST00000263630 GCC1Q96CN9 775 aa16.16■□□□□ 0.18
CCDC88A-201ENST00000263630 SURF6O75683 361 aaKnown RBP16.16■□□□□ 0.18
CCDC88A-201ENST00000263630 MXRA7P84157 204 aa16.16■□□□□ 0.18
CCDC88A-201ENST00000263630 ODF2LQ9ULJ1 636 aa16.16■□□□□ 0.18
CCDC88A-201ENST00000263630 IBSPP21815 317 aaPredicted RBP16.16■□□□□ 0.18
CCDC88A-201ENST00000263630 SWAP70Q9UH65 585 aa16.16■□□□□ 0.18
CCDC88A-201ENST00000263630 DYNC1I1O14576 645 aa16.16■□□□□ 0.18
CCDC88A-201ENST00000263630 GNAI2P04899 355 aa16.16■□□□□ 0.18
CCDC88A-201ENST00000263630 ZFYP08048 801 aaPredicted RBP16.16■□□□□ 0.18
CCDC88A-201ENST00000263630 CKAP4Q07065 602 aaKnown RBP16.16■□□□□ 0.18
CCDC88A-201ENST00000263630 SMC6Q96SB8 1091 aa16.16■□□□□ 0.18
CCDC88A-201ENST00000263630 TPD52P55327 224 aaPredicted RBP16.16■□□□□ 0.18
CCDC88A-201ENST00000263630 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.16■□□□□ 0.18
CCDC88A-201ENST00000263630 MAP4K4O95819 1239 aaPredicted RBP16.15■□□□□ 0.18
CCDC88A-201ENST00000263630 IVLP07476 585 aa16.15■□□□□ 0.18
CCDC88A-201ENST00000263630 GTF2A1P52655 376 aaPredicted RBP16.15■□□□□ 0.18
CCDC88A-201ENST00000263630 ZSCAN31Q96LW9 406 aaPredicted RBP16.15■□□□□ 0.18
CCDC88A-201ENST00000263630 TTC12Q9H892 705 aaPredicted RBP16.15■□□□□ 0.18
CCDC88A-201ENST00000263630 EHMT1Q9H9B1 1298 aa16.15■□□□□ 0.18
CCDC88A-201ENST00000263630 PPP6R1Q9UPN7 881 aa16.15■□□□□ 0.18
CCDC88A-201ENST00000263630 APAF1O14727 1248 aa16.14■□□□□ 0.17
CCDC88A-201ENST00000263630 HSF2BPO75031 334 aa16.14■□□□□ 0.17
CCDC88A-201ENST00000263630 PSMC4P43686 418 aa16.14■□□□□ 0.17
CCDC88A-201ENST00000263630 CFAP58Q5T655 872 aa16.14■□□□□ 0.17
CCDC88A-201ENST00000263630 RGS22Q8NE09 1264 aa16.14■□□□□ 0.17
CCDC88A-201ENST00000263630 SERPINA10Q9UK55 444 aa16.14■□□□□ 0.17
CCDC88A-201ENST00000263630 RBM25P49756 843 aaKnown RBP16.14■□□□□ 0.17
CCDC88A-201ENST00000263630 EHBP1Q8NDI1 1231 aa16.14■□□□□ 0.17
CCDC88A-201ENST00000263630 TTC21AQ8NDW8 1320 aa16.14■□□□□ 0.17
CCDC88A-201ENST00000263630 K7ELQ4 463 aaPredicted RBP16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms