RNA–Protein interactions for RNA: ENST00000263187.3

MSH4-201, Transcript of mutS homolog 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH4, Length 3,266 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4-201ENST00000263187 EXOC6BQ9Y2D4 811 aa11.29□□□□□ -0.6
MSH4-201ENST00000263187 CCDC61Q9Y6R9 512 aa11.29□□□□□ -0.6
MSH4-201ENST00000263187 AK9Q5TCS8 1911 aa11.29□□□□□ -0.6
MSH4-201ENST00000263187 ALKQ9UM73 1620 aa11.29□□□□□ -0.6
MSH4-201ENST00000263187 ARHGAP45Q92619 1136 aa11.28□□□□□ -0.6
MSH4-201ENST00000263187 ZNF428Q96B54 188 aa11.28□□□□□ -0.6
MSH4-201ENST00000263187 TTC22Q5TAA0 569 aa11.28□□□□□ -0.6
MSH4-201ENST00000263187 CAVIN1Q6NZI2 390 aaKnown RBP11.28□□□□□ -0.6
MSH4-201ENST00000263187 LTV1Q96GA3 475 aaPredicted RBP11.28□□□□□ -0.6
MSH4-201ENST00000263187 SLC26A8Q96RN1 970 aa11.28□□□□□ -0.6
MSH4-201ENST00000263187 TMEM131LA2VDJ0 1609 aa11.27□□□□□ -0.6
MSH4-201ENST00000263187 DCTPP1Q9H773 170 aa11.27□□□□□ -0.6
MSH4-201ENST00000263187 PRR36Q9H6K5 1346 aa11.27□□□□□ -0.6
MSH4-201ENST00000263187 RIMS2Q9UQ26 1411 aa11.27□□□□□ -0.6
MSH4-201ENST00000263187 BAG4O95429 457 aaKnown RBP11.27□□□□□ -0.61
MSH4-201ENST00000263187 CEP85Q6P2H3 762 aa11.27□□□□□ -0.61
MSH4-201ENST00000263187 RBM27Q9P2N5 1060 aaKnown RBP11.27□□□□□ -0.61
MSH4-201ENST00000263187 MSH6P52701 1360 aa11.27□□□□□ -0.61
MSH4-201ENST00000263187 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.27□□□□□ -0.61
MSH4-201ENST00000263187 MAP2P11137 1827 aaKnown RBP11.27□□□□□ -0.61
MSH4-201ENST00000263187 ZFYVE9O95405 1425 aa11.27□□□□□ -0.61
MSH4-201ENST00000263187 LMOD3Q0VAK6 560 aa11.26□□□□□ -0.61
MSH4-201ENST00000263187 SETD1BQ9UPS6 1966 aaKnown RBP11.26□□□□□ -0.61
MSH4-201ENST00000263187 PRPF40AO75400 957 aaKnown RBP11.26□□□□□ -0.61
MSH4-201ENST00000263187 USP26Q9BXU7 913 aa11.26□□□□□ -0.61
MSH4-201ENST00000263187 CHMP4BQ9H444 224 aaKnown RBP11.26□□□□□ -0.61
MSH4-201ENST00000263187 RILPL2Q969X0 211 aa11.26□□□□□ -0.61
MSH4-201ENST00000263187 TSPYL4Q9UJ04 414 aa11.26□□□□□ -0.61
MSH4-201ENST00000263187 CPS1P31327 1500 aa11.25□□□□□ -0.61
MSH4-201ENST00000263187 ESPNB1AK53 854 aa11.25□□□□□ -0.61
MSH4-201ENST00000263187 GOLGA6L22H0YM25 854 aa11.25□□□□□ -0.61
MSH4-201ENST00000263187 MAP4K4O95819 1239 aaPredicted RBP11.25□□□□□ -0.61
MSH4-201ENST00000263187 CEP170BQ9Y4F5 1589 aaPredicted RBP11.25□□□□□ -0.61
MSH4-201ENST00000263187 PTCH1Q13635 1447 aa11.25□□□□□ -0.61
MSH4-201ENST00000263187 ANKRD44Q8N8A2 993 aa11.25□□□□□ -0.61
MSH4-201ENST00000263187 ACEP12821 1306 aa11.25□□□□□ -0.61
MSH4-201ENST00000263187 TRIM6-TRIM34B2RNG4 842 aa11.24□□□□□ -0.61
MSH4-201ENST00000263187 BRPF1P55201 1214 aaPredicted RBP11.24□□□□□ -0.61
MSH4-201ENST00000263187 MED14O60244 1454 aa11.24□□□□□ -0.61
MSH4-201ENST00000263187 INTS3Q68E01 1043 aaKnown RBP11.24□□□□□ -0.61
MSH4-201ENST00000263187 NCOA3Q9Y6Q9 1424 aa11.24□□□□□ -0.61
MSH4-201ENST00000263187 NASPP49321 788 aaPredicted RBP11.24□□□□□ -0.61
MSH4-201ENST00000263187 C14orf37Q86TY3 774 aa11.24□□□□□ -0.61
MSH4-201ENST00000263187 MPNDQ8N594 471 aa11.24□□□□□ -0.61
MSH4-201ENST00000263187 RTF1Q92541 710 aaKnown RBP11.24□□□□□ -0.61
MSH4-201ENST00000263187 LARP6Q9BRS8 491 aaKnown RBP11.24□□□□□ -0.61
MSH4-201ENST00000263187 NEK4P51957 841 aa11.23□□□□□ -0.61
MSH4-201ENST00000263187 MTHFSDQ2M296 383 aaKnown RBP11.23□□□□□ -0.61
MSH4-201ENST00000263187 CIZ1Q9ULV3 898 aaPredicted RBP11.23□□□□□ -0.61
MSH4-201ENST00000263187 CEBPAP49715 358 aaPredicted RBP11.23□□□□□ -0.61
MSH4-201ENST00000263187 FKBP5Q13451 457 aaPredicted RBP11.22□□□□□ -0.61
MSH4-201ENST00000263187 RABEP1Q15276 862 aa11.22□□□□□ -0.61
MSH4-201ENST00000263187 IL1RAPL2Q9NP60 686 aa11.22□□□□□ -0.61
MSH4-201ENST00000263187 CHL1O00533 1208 aa11.22□□□□□ -0.61
MSH4-201ENST00000263187 CASC1Q6TDU7 716 aa11.22□□□□□ -0.61
MSH4-201ENST00000263187 RBM33Q96EV2 1170 aaKnown RBP11.22□□□□□ -0.61
MSH4-201ENST00000263187 UPF3BQ9BZI7 483 aaKnown RBP11.22□□□□□ -0.61
MSH4-201ENST00000263187 TTC21BQ7Z4L5 1316 aa11.22□□□□□ -0.61
MSH4-201ENST00000263187 EDC4Q6P2E9 1401 aaKnown RBP11.22□□□□□ -0.61
MSH4-201ENST00000263187 LMTK3Q96Q04 1460 aa11.22□□□□□ -0.61
MSH4-201ENST00000263187 CLCN1P35523 988 aa11.22□□□□□ -0.61
MSH4-201ENST00000263187 USHBP1Q8N6Y0 703 aa11.22□□□□□ -0.61
MSH4-201ENST00000263187 RNF214Q8ND24 703 aa11.22□□□□□ -0.61
MSH4-201ENST00000263187 A2ML1A8K2U0 1454 aa11.21□□□□□ -0.61
MSH4-201ENST00000263187 RTL1A6NKG5 1358 aa11.21□□□□□ -0.61
MSH4-201ENST00000263187 TNRQ92752 1358 aa11.21□□□□□ -0.61
MSH4-201ENST00000263187 PIK3R4Q99570 1358 aa11.21□□□□□ -0.61
MSH4-201ENST00000263187 MAP3K19Q56UN5 1328 aa11.21□□□□□ -0.61
MSH4-201ENST00000263187 ANO2Q9NQ90 1003 aa11.21□□□□□ -0.61
MSH4-201ENST00000263187 NSFL1CQ9UNZ2 370 aaKnown RBP11.21□□□□□ -0.61
MSH4-201ENST00000263187 AMPHP49418 695 aa11.21□□□□□ -0.62
MSH4-201ENST00000263187 GDPD2Q9HCC8 539 aa11.21□□□□□ -0.62
MSH4-201ENST00000263187 PNMA6EA0A0J9YXQ4 647 aa11.2□□□□□ -0.62
MSH4-201ENST00000263187 SKOR2Q2VWA4 1001 aaPredicted RBP11.2□□□□□ -0.62
MSH4-201ENST00000263187 PALD1Q9ULE6 856 aa11.2□□□□□ -0.62
MSH4-201ENST00000263187 ST18O60284 1047 aa11.2□□□□□ -0.62
MSH4-201ENST00000263187 RPAP2Q8IXW5 612 aaPredicted RBP11.2□□□□□ -0.62
MSH4-201ENST00000263187 NGDNQ8NEJ9 315 aaKnown RBP11.2□□□□□ -0.62
MSH4-201ENST00000263187 SLIT1O75093 1534 aa11.2□□□□□ -0.62
MSH4-201ENST00000263187 CPSF1Q10570 1443 aaKnown RBP11.2□□□□□ -0.62
MSH4-201ENST00000263187 PDE1AP54750 535 aa11.2□□□□□ -0.62
MSH4-201ENST00000263187 ROBO2Q9HCK4 1378 aa11.19□□□□□ -0.62
MSH4-201ENST00000263187 EIF2S2P20042 333 aaKnown RBP11.19□□□□□ -0.62
MSH4-201ENST00000263187 ZSCAN23Q3MJ62 389 aa11.19□□□□□ -0.62
MSH4-201ENST00000263187 NUTM1Q86Y26 1132 aa11.19□□□□□ -0.62
MSH4-201ENST00000263187 KIF20BQ96Q89 1820 aa11.19□□□□□ -0.62
MSH4-201ENST00000263187 PRIM1P49642 420 aaKnown RBP11.19□□□□□ -0.62
MSH4-201ENST00000263187 UNC5CLQ8IV45 518 aa11.19□□□□□ -0.62
MSH4-201ENST00000263187 ANP32BQ92688 251 aaKnown RBP11.19□□□□□ -0.62
MSH4-201ENST00000263187 ZDHHC9Q9Y397 364 aa11.19□□□□□ -0.62
MSH4-201ENST00000263187 ATP10DQ9P241 1426 aa11.19□□□□□ -0.62
MSH4-201ENST00000263187 ERC2O15083 957 aa11.19□□□□□ -0.62
MSH4-201ENST00000263187 ARID3AQ99856 593 aa11.19□□□□□ -0.62
MSH4-201ENST00000263187 RBSNQ9H1K0 784 aa11.19□□□□□ -0.62
MSH4-201ENST00000263187 LMBRD1Q9NUN5 540 aa11.19□□□□□ -0.62
MSH4-201ENST00000263187 ATP7BP35670 1465 aa11.18□□□□□ -0.62
MSH4-201ENST00000263187 ARHGAP23Q9P227 1491 aa11.18□□□□□ -0.62
MSH4-201ENST00000263187 KNDC1Q76NI1 1749 aa11.18□□□□□ -0.62
MSH4-201ENST00000263187 SYCE3A1L190 88 aa11.18□□□□□ -0.62
MSH4-201ENST00000263187 GPT2Q8TD30 523 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms