RNA–Protein interactions for RNA: ENST00000260130.8

SDCBP-201, Transcript of syndecan binding protein, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SDCBP, Length 2,167 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-201ENST00000260130 DIAPH1O60610 1272 aaKnown RBP22.57■■□□□ 1.2
SDCBP-201ENST00000260130 DDX54Q8TDD1 881 aaKnown RBP22.57■■□□□ 1.2
SDCBP-201ENST00000260130 SF3B2Q13435 895 aaKnown RBP22.56■■□□□ 1.2
SDCBP-201ENST00000260130 TRIM37O94972 964 aa22.56■■□□□ 1.2
SDCBP-201ENST00000260130 RALBP1Q15311 655 aa22.55■■□□□ 1.2
SDCBP-201ENST00000260130 CFAP53Q96M91 514 aa22.55■■□□□ 1.2
SDCBP-201ENST00000260130 BCL9O00512 1426 aa22.54■■□□□ 1.2
SDCBP-201ENST00000260130 SULT6B1Q6IMI4 303 aa22.52■■□□□ 1.2
SDCBP-201ENST00000260130 AEBP1Q8IUX7 1158 aa22.52■■□□□ 1.2
SDCBP-201ENST00000260130 COL3A1P02461 1466 aaPredicted RBP22.51■■□□□ 1.19
SDCBP-201ENST00000260130 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.5■■□□□ 1.19
SDCBP-201ENST00000260130 SPG7Q9UQ90 795 aa22.5■■□□□ 1.19
SDCBP-201ENST00000260130 YTHDC1Q96MU7 727 aaKnown RBP22.5■■□□□ 1.19
SDCBP-201ENST00000260130 PCDH11XQ9BZA7 1347 aa22.5■■□□□ 1.19
SDCBP-201ENST00000260130 PCDH11YQ9BZA8 1340 aa22.5■■□□□ 1.19
SDCBP-201ENST00000260130 KDRP35968 1356 aa22.49■■□□□ 1.19
SDCBP-201ENST00000260130 DEFB132Q7Z7B7 95 aa22.49■■□□□ 1.19
SDCBP-201ENST00000260130 RGPD1P0DJD0 1748 aa22.48■■□□□ 1.19
SDCBP-201ENST00000260130 PLEKHG2Q9H7P9 1386 aa22.48■■□□□ 1.19
SDCBP-201ENST00000260130 BAG6P46379 1132 aa22.48■■□□□ 1.19
SDCBP-201ENST00000260130 BCL11BQ9C0K0 894 aaPredicted RBP22.48■■□□□ 1.19
SDCBP-201ENST00000260130 U2SURPO15042 1029 aaKnown RBP22.48■■□□□ 1.19
SDCBP-201ENST00000260130 APBA3O96018 575 aa22.48■■□□□ 1.19
SDCBP-201ENST00000260130 HMOX1P09601 288 aa22.47■■□□□ 1.19
SDCBP-201ENST00000260130 CYP27B1O15528 508 aa22.46■■□□□ 1.19
SDCBP-201ENST00000260130 ACSBG1Q96GR2 724 aa22.46■■□□□ 1.19
SDCBP-201ENST00000260130 NUDCQ9Y266 331 aa22.46■■□□□ 1.19
SDCBP-201ENST00000260130 PTF1AQ7RTS3 328 aa22.46■■□□□ 1.19
SDCBP-201ENST00000260130 KCNQ2O43526 872 aa22.45■■□□□ 1.18
SDCBP-201ENST00000260130 PLEKHO1Q53GL0 409 aaPredicted RBP22.45■■□□□ 1.18
SDCBP-201ENST00000260130 PRKRIP1Q9H875 184 aaPredicted RBP22.45■■□□□ 1.18
SDCBP-201ENST00000260130 SHANK3Q9BYB0 1731 aa22.45■■□□□ 1.18
SDCBP-201ENST00000260130 AMOTQ4VCS5 1084 aa22.45■■□□□ 1.18
SDCBP-201ENST00000260130 MYBBP1AQ9BQG0 1328 aaKnown RBP22.44■■□□□ 1.18
SDCBP-201ENST00000260130 EN1Q05925 392 aaPredicted RBP22.43■■□□□ 1.18
SDCBP-201ENST00000260130 PKD1L3Q7Z443 1732 aa22.43■■□□□ 1.18
SDCBP-201ENST00000260130 IFNL2Q8IZJ0 200 aa22.43■■□□□ 1.18
SDCBP-201ENST00000260130 SBF2Q86WG5 1849 aa22.42■■□□□ 1.18
SDCBP-201ENST00000260130 TNS1Q9HBL0 1735 aaKnown RBP22.42■■□□□ 1.18
SDCBP-201ENST00000260130 PHKG2P15735 406 aa22.41■■□□□ 1.18
SDCBP-201ENST00000260130 NKX1-1Q15270 411 aaPredicted RBP22.41■■□□□ 1.18
SDCBP-201ENST00000260130 PRIM1P49642 420 aaKnown RBP22.4■■□□□ 1.18
SDCBP-201ENST00000260130 CAMKK2Q96RR4 588 aa22.4■■□□□ 1.18
SDCBP-201ENST00000260130 U2AF1L5P0DN76 240 aaPredicted RBP22.39■■□□□ 1.18
SDCBP-201ENST00000260130 U2AF1Q01081 240 aaKnown RBP eCLIP22.39■■□□□ 1.18
SDCBP-201ENST00000260130 SYTL4Q96C24 671 aaPredicted RBP22.39■■□□□ 1.18
SDCBP-201ENST00000260130 PLSCR1O15162 318 aa22.39■■□□□ 1.17
SDCBP-201ENST00000260130 ZNF530Q6P9A1 599 aaPredicted RBP22.39■■□□□ 1.17
SDCBP-201ENST00000260130 EZH2Q15910 746 aaKnown RBP22.38■■□□□ 1.17
SDCBP-201ENST00000260130 NHSQ6T4R5 1651 aa22.37■■□□□ 1.17
SDCBP-201ENST00000260130 C1orf141Q5JVX7 400 aa22.36■■□□□ 1.17
SDCBP-201ENST00000260130 RSPH6AQ9H0K4 717 aa22.36■■□□□ 1.17
SDCBP-201ENST00000260130 HSP90AB1P08238 724 aaKnown RBP22.35■■□□□ 1.17
SDCBP-201ENST00000260130 FCHSD2O94868 740 aa22.35■■□□□ 1.17
SDCBP-201ENST00000260130 PRKAR2BP31323 418 aa22.33■■□□□ 1.17
SDCBP-201ENST00000260130 MTHFSDQ2M296 383 aaKnown RBP22.33■■□□□ 1.17
SDCBP-201ENST00000260130 DCAF5Q96JK2 942 aa22.33■■□□□ 1.17
SDCBP-201ENST00000260130 DOT1LQ8TEK3 1739 aa22.33■■□□□ 1.16
SDCBP-201ENST00000260130 MPRIPQ6WCQ1 1025 aa22.32■■□□□ 1.16
SDCBP-201ENST00000260130 KAT6BQ8WYB5 2073 aa22.32■■□□□ 1.16
SDCBP-201ENST00000260130 ANP32CO43423 234 aa22.32■■□□□ 1.16
SDCBP-201ENST00000260130 AKAP4Q5JQC9 854 aa22.32■■□□□ 1.16
SDCBP-201ENST00000260130 PROM2Q8N271 834 aa22.3■■□□□ 1.16
SDCBP-201ENST00000260130 PHACTR3Q96KR7 559 aa22.3■■□□□ 1.16
SDCBP-201ENST00000260130 ERVV-2B6SEH9 535 aa22.29■■□□□ 1.16
SDCBP-201ENST00000260130 TXNRD1Q16881 649 aa22.29■■□□□ 1.16
SDCBP-201ENST00000260130 GAS2L2Q8NHY3 880 aa22.29■■□□□ 1.16
SDCBP-201ENST00000260130 BTAF1O14981 1849 aa22.28■■□□□ 1.16
SDCBP-201ENST00000260130 PIGBQ92521 554 aa22.28■■□□□ 1.16
SDCBP-201ENST00000260130 TMOD3Q9NYL9 352 aa22.28■■□□□ 1.16
SDCBP-201ENST00000260130 TOGARAM1Q9Y4F4 1720 aa22.27■■□□□ 1.16
SDCBP-201ENST00000260130 KDM6AO15550 1401 aaPredicted RBP22.27■■□□□ 1.16
SDCBP-201ENST00000260130 RGPD3A6NKT7 1758 aaPredicted RBP22.26■■□□□ 1.15
SDCBP-201ENST00000260130 RGPD4Q7Z3J3 1758 aa22.26■■□□□ 1.15
SDCBP-201ENST00000260130 PNNQ9H307 717 aaKnown RBP22.26■■□□□ 1.15
SDCBP-201ENST00000260130 CABP4P57796 275 aa22.25■■□□□ 1.15
SDCBP-201ENST00000260130 NEFMP07197 916 aa22.24■■□□□ 1.15
SDCBP-201ENST00000260130 LGR6Q9HBX8 967 aa22.24■■□□□ 1.15
SDCBP-201ENST00000260130 GNAT3A8MTJ3 354 aa22.23■■□□□ 1.15
SDCBP-201ENST00000260130 WDR43Q15061 677 aaKnown RBP eCLIP22.23■■□□□ 1.15
SDCBP-201ENST00000260130 PLEKHF1Q96S99 279 aa22.23■■□□□ 1.15
SDCBP-201ENST00000260130 RREB1Q92766 1687 aa22.23■■□□□ 1.15
SDCBP-201ENST00000260130 RNMTO43148 476 aaKnown RBP22.23■■□□□ 1.15
SDCBP-201ENST00000260130 NBPF14Q5TI25 921 aa22.22■■□□□ 1.15
SDCBP-201ENST00000260130 SMARCC1Q92922 1105 aaPredicted RBP22.22■■□□□ 1.15
SDCBP-201ENST00000260130 ITGB4P16144 1822 aa22.22■■□□□ 1.15
SDCBP-201ENST00000260130 SLC27A3Q5K4L6 730 aa22.22■■□□□ 1.15
SDCBP-201ENST00000260130 NFATC2IPQ8NCF5 419 aa22.22■■□□□ 1.15
SDCBP-201ENST00000260130 MAP3K5Q99683 1374 aa22.22■■□□□ 1.15
SDCBP-201ENST00000260130 LRRC4BQ9NT99 713 aa22.21■■□□□ 1.15
SDCBP-201ENST00000260130 ASAP1Q9ULH1 1129 aa22.21■■□□□ 1.15
SDCBP-201ENST00000260130 PALLDQ8WX93 1383 aa22.21■■□□□ 1.15
SDCBP-201ENST00000260130 CCDC184Q52MB2 194 aa22.19■■□□□ 1.14
SDCBP-201ENST00000260130 SLC52A2Q9HAB3 445 aa22.19■■□□□ 1.14
SDCBP-201ENST00000260130 ADAMTS8Q9UP79 889 aa22.19■■□□□ 1.14
SDCBP-201ENST00000260130 MAPK8IP3Q9UPT6 1336 aa22.19■■□□□ 1.14
SDCBP-201ENST00000260130 NUP188Q5SRE5 1749 aa22.19■■□□□ 1.14
SDCBP-201ENST00000260130 IL17REQ8NFR9 667 aa22.19■■□□□ 1.14
SDCBP-201ENST00000260130 ATG3Q9NT62 314 aa22.19■■□□□ 1.14
SDCBP-201ENST00000260130 CCNL1Q9UK58 526 aaPredicted RBP22.18■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 73.6 ms