RNA–Protein interactions for RNA: ENST00000237186.10

UBE3D-201, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 1 (best)

Gene UBE3D, Length 1,879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-201ENST00000237186 SOX12O15370 315 aa20.35■□□□□ 0.85
UBE3D-201ENST00000237186 NPHP4O75161 1426 aaPredicted RBP20.35■□□□□ 0.85
UBE3D-201ENST00000237186 SIRT2Q8IXJ6 389 aa20.35■□□□□ 0.85
UBE3D-201ENST00000237186 GAS2L2Q8NHY3 880 aa20.35■□□□□ 0.85
UBE3D-201ENST00000237186 PTPRCP08575 1304 aa20.34■□□□□ 0.85
UBE3D-201ENST00000237186 USP54Q70EL1 1684 aa20.33■□□□□ 0.84
UBE3D-201ENST00000237186 FMN2Q9NZ56 1722 aa20.33■□□□□ 0.84
UBE3D-201ENST00000237186 CHD2O14647 1828 aaKnown RBP20.32■□□□□ 0.84
UBE3D-201ENST00000237186 NFKBIBQ15653 356 aa20.32■□□□□ 0.84
UBE3D-201ENST00000237186 RTF1Q92541 710 aaKnown RBP20.32■□□□□ 0.84
UBE3D-201ENST00000237186 RGS12O14924 1447 aa20.32■□□□□ 0.84
UBE3D-201ENST00000237186 HOXC9P31274 260 aa20.31■□□□□ 0.84
UBE3D-201ENST00000237186 LNPKQ9C0E8 428 aa20.31■□□□□ 0.84
UBE3D-201ENST00000237186 KRT24Q2M2I5 525 aa20.3■□□□□ 0.84
UBE3D-201ENST00000237186 BMP2KLQ5H9B9 411 aa20.3■□□□□ 0.84
UBE3D-201ENST00000237186 FOXO3O43524 673 aa20.3■□□□□ 0.84
UBE3D-201ENST00000237186 C1orf115Q9H7X2 142 aa20.3■□□□□ 0.84
UBE3D-201ENST00000237186 RGPD8O14715 1765 aaPredicted RBP20.3■□□□□ 0.84
UBE3D-201ENST00000237186 ANKRD45Q5TZF3 282 aa20.29■□□□□ 0.84
UBE3D-201ENST00000237186 ABTB2Q8N961 1025 aa20.28■□□□□ 0.84
UBE3D-201ENST00000237186 PHF8Q9UPP1 1060 aa20.28■□□□□ 0.84
UBE3D-201ENST00000237186 RTL1A6NKG5 1358 aa20.28■□□□□ 0.84
UBE3D-201ENST00000237186 C22orf23Q9BZE7 217 aa20.28■□□□□ 0.84
UBE3D-201ENST00000237186 DCTPP1Q9H773 170 aa20.27■□□□□ 0.84
UBE3D-201ENST00000237186 RPAP2Q8IXW5 612 aaPredicted RBP20.26■□□□□ 0.83
UBE3D-201ENST00000237186 BABAM1Q9NWV8 329 aa20.26■□□□□ 0.83
UBE3D-201ENST00000237186 TSPYL4Q9UJ04 414 aa20.26■□□□□ 0.83
UBE3D-201ENST00000237186 NWD1Q149M9 1564 aa20.26■□□□□ 0.83
UBE3D-201ENST00000237186 SOS1Q07889 1333 aaPredicted RBP20.25■□□□□ 0.83
UBE3D-201ENST00000237186 ANKRD44Q8N8A2 993 aa20.25■□□□□ 0.83
UBE3D-201ENST00000237186 GNAT3A8MTJ3 354 aa20.24■□□□□ 0.83
UBE3D-201ENST00000237186 SLC4A2P04920 1241 aa20.24■□□□□ 0.83
UBE3D-201ENST00000237186 TBC1D2Q9BYX2 928 aa20.24■□□□□ 0.83
UBE3D-201ENST00000237186 MARF1Q9Y4F3 1742 aaKnown RBP20.24■□□□□ 0.83
UBE3D-201ENST00000237186 MFAP1P55081 439 aaKnown RBP20.23■□□□□ 0.83
UBE3D-201ENST00000237186 RBM33Q96EV2 1170 aaKnown RBP20.23■□□□□ 0.83
UBE3D-201ENST00000237186 ADGRL3Q9HAR2 1447 aa20.23■□□□□ 0.83
UBE3D-201ENST00000237186 MIS18AQ9NYP9 233 aa20.23■□□□□ 0.83
UBE3D-201ENST00000237186 ATP10DQ9P241 1426 aa20.22■□□□□ 0.83
UBE3D-201ENST00000237186 RBM25P49756 843 aaKnown RBP20.22■□□□□ 0.83
UBE3D-201ENST00000237186 ANTXR1Q9H6X2 564 aa20.22■□□□□ 0.83
UBE3D-201ENST00000237186 NUTM2GQ5VZR2 741 aa20.22■□□□□ 0.83
UBE3D-201ENST00000237186 IP6K1Q92551 441 aa20.22■□□□□ 0.83
UBE3D-201ENST00000237186 CEP85Q6P2H3 762 aa20.2■□□□□ 0.82
UBE3D-201ENST00000237186 LRRC37A3O60309 1634 aa20.19■□□□□ 0.82
UBE3D-201ENST00000237186 MAP3K5Q99683 1374 aa20.19■□□□□ 0.82
UBE3D-201ENST00000237186 CCT4P50991 539 aaKnown RBP20.19■□□□□ 0.82
UBE3D-201ENST00000237186 IL17REQ8NFR9 667 aa20.19■□□□□ 0.82
UBE3D-201ENST00000237186 KCNH5Q8NCM2 988 aa20.18■□□□□ 0.82
UBE3D-201ENST00000237186 MSH6P52701 1360 aa20.18■□□□□ 0.82
UBE3D-201ENST00000237186 TAF7Q15545 349 aaPredicted RBP20.18■□□□□ 0.82
UBE3D-201ENST00000237186 CCDC30Q5VVM6 783 aa20.17■□□□□ 0.82
UBE3D-201ENST00000237186 G2E3Q7L622 706 aa20.17■□□□□ 0.82
UBE3D-201ENST00000237186 PLEKHM2Q8IWE5 1019 aa20.17■□□□□ 0.82
UBE3D-201ENST00000237186 EIF5BO60841 1220 aaKnown RBP20.16■□□□□ 0.82
UBE3D-201ENST00000237186 PSME1Q06323 249 aa20.16■□□□□ 0.82
UBE3D-201ENST00000237186 MEIS3Q99687 375 aa20.16■□□□□ 0.82
UBE3D-201ENST00000237186 NFAT5O94916 1531 aa20.16■□□□□ 0.82
UBE3D-201ENST00000237186 FRAT2O75474 233 aaPredicted RBP20.16■□□□□ 0.82
UBE3D-201ENST00000237186 C14orf37Q86TY3 774 aa20.16■□□□□ 0.82
UBE3D-201ENST00000237186 STK31Q9BXU1 1019 aa20.16■□□□□ 0.82
UBE3D-201ENST00000237186 ESCO1Q5FWF5 840 aa20.15■□□□□ 0.82
UBE3D-201ENST00000237186 SNX21Q969T3 373 aa20.14■□□□□ 0.81
UBE3D-201ENST00000237186 TBC1D9Q6ZT07 1266 aa20.13■□□□□ 0.81
UBE3D-201ENST00000237186 CEMIPQ8WUJ3 1361 aa20.13■□□□□ 0.81
UBE3D-201ENST00000237186 GSE1Q14687 1217 aa20.13■□□□□ 0.81
UBE3D-201ENST00000237186 PROSER2Q86WR7 435 aaPredicted RBP20.13■□□□□ 0.81
UBE3D-201ENST00000237186 LTV1Q96GA3 475 aaPredicted RBP20.13■□□□□ 0.81
UBE3D-201ENST00000237186 HMMRO75330 724 aa20.12■□□□□ 0.81
UBE3D-201ENST00000237186 CDC45O75419 566 aa20.12■□□□□ 0.81
UBE3D-201ENST00000237186 KDM4FA0A1W2PPD8 638 aa20.11■□□□□ 0.81
UBE3D-201ENST00000237186 GSPT1P15170 499 aaKnown RBP20.11■□□□□ 0.81
UBE3D-201ENST00000237186 FLIIQ13045 1269 aa20.11■□□□□ 0.81
UBE3D-201ENST00000237186 SLKQ9H2G2 1235 aaPredicted RBP20.11■□□□□ 0.81
UBE3D-201ENST00000237186 HSPA2P54652 639 aa20.11■□□□□ 0.81
UBE3D-201ENST00000237186 NBPF6Q5VWK0 638 aa20.11■□□□□ 0.81
UBE3D-201ENST00000237186 NBPF4Q96M43 638 aa20.11■□□□□ 0.81
UBE3D-201ENST00000237186 F6X3S4 739 aa20.1■□□□□ 0.81
UBE3D-201ENST00000237186 TTC22Q5TAA0 569 aa20.1■□□□□ 0.81
UBE3D-201ENST00000237186 PHRF1Q9P1Y6 1649 aaKnown RBP20.1■□□□□ 0.81
UBE3D-201ENST00000237186 GNAI2P04899 355 aa20.09■□□□□ 0.81
UBE3D-201ENST00000237186 ARHGEF25Q86VW2 580 aa20.09■□□□□ 0.81
UBE3D-201ENST00000237186 GNAI3P08754 354 aa20.08■□□□□ 0.81
UBE3D-201ENST00000237186 SLC4A10Q6U841 1118 aa20.08■□□□□ 0.81
UBE3D-201ENST00000237186 HSCBQ8IWL3 235 aa20.08■□□□□ 0.81
UBE3D-201ENST00000237186 USHBP1Q8N6Y0 703 aa20.08■□□□□ 0.81
UBE3D-201ENST00000237186 KIF2CQ99661 725 aa20.08■□□□□ 0.81
UBE3D-201ENST00000237186 GCP02774 474 aa20.07■□□□□ 0.8
UBE3D-201ENST00000237186 C16orf71Q8IYS4 520 aaPredicted RBP20.07■□□□□ 0.8
UBE3D-201ENST00000237186 CHMP4AQ9BY43 222 aa20.07■□□□□ 0.8
UBE3D-201ENST00000237186 NCAPD2Q15021 1401 aa20.07■□□□□ 0.8
UBE3D-201ENST00000237186 HOXB7P09629 217 aa20.07■□□□□ 0.8
UBE3D-201ENST00000237186 ORAI2Q96SN7 254 aa20.07■□□□□ 0.8
UBE3D-201ENST00000237186 SLIT3O75094 1523 aa20.06■□□□□ 0.8
UBE3D-201ENST00000237186 FKBP5Q13451 457 aaPredicted RBP20.06■□□□□ 0.8
UBE3D-201ENST00000237186 OSBPL3Q9H4L5 887 aa20.06■□□□□ 0.8
UBE3D-201ENST00000237186 CHMP5Q9NZZ3 219 aa20.06■□□□□ 0.8
UBE3D-201ENST00000237186 NCOA3Q9Y6Q9 1424 aa20.06■□□□□ 0.8
UBE3D-201ENST00000237186 MED1Q15648 1581 aaPredicted RBP20.06■□□□□ 0.8
UBE3D-201ENST00000237186 PXDNLA1KZ92 1463 aa20.05■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms