RNA–Protein interactions for RNA: YKL010C

UFD4, Transcript of Ubiquitin-protein ligase (E3), yeastyeast

Gene UFD4, Length 4,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UFD4YKL010C ATE1P16639 503 aa2.51□□□□□ -2.01
UFD4YKL010C CRG1P38892 291 aaRIP-Chip data2.51□□□□□ -2.01 RIP-Chip
UFD4YKL010C CCT5P40413 562 aaKnown RBP2.51□□□□□ -2.01
UFD4YKL010C BIK1P11709 440 aa2.51□□□□□ -2.01
UFD4YKL010C TPM1P17536 199 aaKnown RBP2.51□□□□□ -2.01
UFD4YKL010C AFT1P22149 690 aa2.51□□□□□ -2.01
UFD4YKL010C SPC110P32380 944 aa2.51□□□□□ -2.01
UFD4YKL010C DJP1P40564 432 aa2.51□□□□□ -2.01
UFD4YKL010C HXT10P43581 546 aa2.51□□□□□ -2.01
UFD4YKL010C IOC3P43596 787 aa2.51□□□□□ -2.01
UFD4YKL010C SEC18P18759 758 aaKnown RBP2.5□□□□□ -2.01
UFD4YKL010C BMH1P29311 267 aaKnown RBP2.5□□□□□ -2.01
UFD4YKL010C PRX1P34227 261 aaKnown RBP2.5□□□□□ -2.01
UFD4YKL010C MYO3P36006 1272 aa2.5□□□□□ -2.01
UFD4YKL010C MAL33P38157 468 aa2.5□□□□□ -2.01
UFD4YKL010C NUG1P40010 520 aaKnown RBP2.5□□□□□ -2.01
UFD4YKL010C DOT5P40553 215 aa2.5□□□□□ -2.01
UFD4YKL010C THI6P41835 540 aa2.5□□□□□ -2.01
UFD4YKL010C IRC3Q06683 689 aa2.5□□□□□ -2.01
UFD4YKL010C CPA2P03965 1118 aaKnown RBP2.5□□□□□ -2.01
UFD4YKL010C RPL19AP0CX82 189 aaKnown RBP2.5□□□□□ -2.01
UFD4YKL010C RPL19BP0CX83 189 aaPredicted RBP2.5□□□□□ -2.01
UFD4YKL010C CEP3P40969 608 aa2.5□□□□□ -2.01
UFD4YKL010C MET32Q12041 191 aa2.5□□□□□ -2.01
UFD4YKL010C ENT1Q12518 454 aa2.5□□□□□ -2.01
UFD4YKL010C NCB2Q92317 146 aa2.5□□□□□ -2.01
UFD4YKL010C PHO13P19881 312 aa2.5□□□□□ -2.01
UFD4YKL010C PES4P39684 611 aa2.5□□□□□ -2.01
UFD4YKL010C PIB2P53191 635 aa2.5□□□□□ -2.01
UFD4YKL010C RSC1P53236 928 aa2.5□□□□□ -2.01
UFD4YKL010C UTP22P53254 1237 aaPredicted RBP2.5□□□□□ -2.01
UFD4YKL010C MAL13P53338 473 aa2.5□□□□□ -2.01
UFD4YKL010C NIS1P53939 407 aa2.5□□□□□ -2.01
UFD4YKL010C COG8Q04632 607 aa2.5□□□□□ -2.01
UFD4YKL010C DIB1Q06819 143 aaPredicted RBP2.5□□□□□ -2.01
UFD4YKL010C PPM2Q08282 695 aa2.5□□□□□ -2.01
UFD4YKL010C SSF2Q12153 453 aaPredicted RBP2.5□□□□□ -2.01
UFD4YKL010C RIF1P29539 1916 aa2.5□□□□□ -2.01
UFD4YKL010C VAS1P07806 1104 aaKnown RBP2.5□□□□□ -2.01
UFD4YKL010C YKL133CP36066 463 aa2.5□□□□□ -2.01
UFD4YKL010C NUP133P36161 1157 aa2.5□□□□□ -2.01
UFD4YKL010C TPS3P38426 1054 aaKnown RBP2.5□□□□□ -2.01
UFD4YKL010C BCD1P38772 366 aa2.5□□□□□ -2.01
UFD4YKL010C DAK2P43550 591 aa2.5□□□□□ -2.01
UFD4YKL010C ALF1P53904 254 aa2.5□□□□□ -2.01
UFD4YKL010C PEP3P27801 918 aa2.49□□□□□ -2.01
UFD4YKL010C MET22P32179 357 aa2.49□□□□□ -2.01
UFD4YKL010C VPS8P39702 1274 aa2.49□□□□□ -2.01
UFD4YKL010C IMH1Q06704 911 aaKnown RBP2.49□□□□□ -2.01
UFD4YKL010C HAT1Q12341 374 aa2.49□□□□□ -2.01
UFD4YKL010C SWC3P31376 625 aa2.49□□□□□ -2.01
UFD4YKL010C HXT1P32465 570 aa2.49□□□□□ -2.01
UFD4YKL010C TOS1P38288 455 aa2.49□□□□□ -2.01
UFD4YKL010C DMA1P38823 416 aa2.49□□□□□ -2.01
UFD4YKL010C CIN4P39110 191 aa2.49□□□□□ -2.01
UFD4YKL010C RRD1P40454 393 aaKnown RBP2.49□□□□□ -2.01
UFD4YKL010C LAA1P39526 2014 aa2.49□□□□□ -2.01
UFD4YKL010C DIT2P21595 489 aa2.49□□□□□ -2.01
UFD4YKL010C MSH1P25846 959 aa2.49□□□□□ -2.01
UFD4YKL010C MCM2P29469 868 aa2.49□□□□□ -2.01
UFD4YKL010C YBP2P53169 641 aa2.49□□□□□ -2.01
UFD4YKL010C SPN1Q06505 410 aaPredicted RBP2.49□□□□□ -2.01
UFD4YKL010C SNF3P10870 884 aa2.48□□□□□ -2.01
UFD4YKL010C RDS1P25611 832 aa2.48□□□□□ -2.01
UFD4YKL010C MRPL10P36520 322 aa2.48□□□□□ -2.01
UFD4YKL010C NOP8Q08287 484 aaPredicted RBP2.48□□□□□ -2.01
UFD4YKL010C PSH1Q12161 406 aa2.48□□□□□ -2.01
UFD4YKL010C APL2P36000 726 aaPredicted RBP2.48□□□□□ -2.01
UFD4YKL010C PSY4P38193 441 aa2.48□□□□□ -2.01
UFD4YKL010C NPR2P39923 615 aa2.48□□□□□ -2.01
UFD4YKL010C ALD2P47771 506 aa2.48□□□□□ -2.01
UFD4YKL010C CTF18P49956 741 aa2.48□□□□□ -2.01
UFD4YKL010C MYO5Q04439 1219 aaKnown RBP2.48□□□□□ -2.01
UFD4YKL010C SPO11P23179 398 aa2.48□□□□□ -2.01
UFD4YKL010C GSY2P27472 705 aa2.48□□□□□ -2.01
UFD4YKL010C ASH1P34233 588 aa2.48□□□□□ -2.01
UFD4YKL010C BMH2P34730 273 aaKnown RBP2.48□□□□□ -2.01
UFD4YKL010C YKT6P36015 200 aaKnown RBP2.48□□□□□ -2.01
UFD4YKL010C NEW1Q08972 1196 aaKnown RBP2.48□□□□□ -2.01
UFD4YKL010C PDC1P06169 563 aaKnown RBP2.48□□□□□ -2.01
UFD4YKL010C ALG1P16661 449 aa2.48□□□□□ -2.01
UFD4YKL010C KXD1P53158 218 aa2.48□□□□□ -2.01
UFD4YKL010C FPK1P53739 893 aa2.48□□□□□ -2.01
UFD4YKL010C RPN7Q06103 429 aaKnown RBP2.48□□□□□ -2.01
UFD4YKL010C FPR4Q06205 392 aaPredicted RBP2.48□□□□□ -2.01
UFD4YKL010C YPR097WQ06839 1073 aa2.48□□□□□ -2.01
UFD4YKL010C NOP14Q99207 810 aaKnown RBP2.48□□□□□ -2.01
UFD4YKL010C COBP00163 385 aa2.47□□□□□ -2.01
UFD4YKL010C SUP35P05453 685 aaKnown RBP2.47□□□□□ -2.01
UFD4YKL010C HIR1P32479 840 aa2.47□□□□□ -2.01
UFD4YKL010C SRP40P32583 406 aaPredicted RBP2.47□□□□□ -2.01
UFD4YKL010C CAB3P36076 571 aa2.47□□□□□ -2.01
UFD4YKL010C MET1P36150 593 aa2.47□□□□□ -2.01
UFD4YKL010C YGL138CP53122 345 aa2.47□□□□□ -2.01
UFD4YKL010C HST2P53686 357 aa2.47□□□□□ -2.01
UFD4YKL010C VTC3Q02725 835 aa2.47□□□□□ -2.01
UFD4YKL010C SYF1Q04048 859 aaPredicted RBP2.47□□□□□ -2.01
UFD4YKL010C ATG13Q06628 738 aa2.47□□□□□ -2.01
UFD4YKL010C DCS2Q12123 353 aa2.47□□□□□ -2.01
UFD4YKL010C PSF3Q12146 194 aa2.47□□□□□ -2.01
Retrieved 100 of 5,963 RNA–protein pairs in 45.7 ms