RNA–Protein interactions for RNA: YFL044C

OTU1, Transcript of Deubiquitylation enzyme that binds to the chaperone-ATPase Cdc48p, yeast

Gene OTU1, Length 906 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
OTU1	YFL044C	SNU71	P53207	620 aa	Known RBP	4.99	□□□□□ -1.61
OTU1	YFL044C	SRF1	Q12516	437 aa		4.99	□□□□□ -1.61
OTU1	YFL044C	THS1	P04801	734 aa	Known RBP	4.98	□□□□□ -1.61
OTU1	YFL044C	FUR4	P05316	633 aa	Known RBP	4.98	□□□□□ -1.61
OTU1	YFL044C	RRN6	P32786	894 aa		4.98	□□□□□ -1.61
OTU1	YFL044C	MDG1	P53885	366 aa		4.98	□□□□□ -1.61
OTU1	YFL044C	HIM1	Q06674	414 aa		4.98	□□□□□ -1.61
OTU1	YFL044C	NGR1	P32831	672 aa	Known RBP	4.97	□□□□□ -1.61
OTU1	YFL044C	ERP5	P38819	212 aa		4.97	□□□□□ -1.61
OTU1	YFL044C	UTP7	P40055	554 aa	Known RBP	4.97	□□□□□ -1.61
OTU1	YFL044C	AAD14	P42884	376 aa		4.97	□□□□□ -1.61
OTU1	YFL044C	SUM1	P46676	1062 aa		4.97	□□□□□ -1.61
OTU1	YFL044C	DSD1	P53095	428 aa		4.97	□□□□□ -1.61
OTU1	YFL044C	RET1	P22276	1149 aa	Known RBP	4.96	□□□□□ -1.62
OTU1	YFL044C	MET22	P32179	357 aa		4.96	□□□□□ -1.62
OTU1	YFL044C	PAM1	P37304	830 aa	Known RBP	4.96	□□□□□ -1.62
OTU1	YFL044C	GRS1	P38088	690 aa	Known RBP	4.96	□□□□□ -1.62
OTU1	YFL044C	STM1	P39015	273 aa	Known RBP	4.96	□□□□□ -1.62
OTU1	YFL044C	PTK2	P47116	818 aa	Known RBP	4.96	□□□□□ -1.62
OTU1	YFL044C	PMD1	P32634	1753 aa		4.96	□□□□□ -1.62
OTU1	YFL044C	TOR1	P35169	2470 aa		4.96	□□□□□ -1.62
OTU1	YFL044C	MCM1	P11746	286 aa		4.95	□□□□□ -1.62
OTU1	YFL044C	HSP104	P31539	908 aa	Known RBP	4.95	□□□□□ -1.62
OTU1	YFL044C	SMY1	P32364	656 aa	Known RBP	4.95	□□□□□ -1.62
OTU1	YFL044C	MAL31	P38156	614 aa		4.95	□□□□□ -1.62
OTU1	YFL044C	BOL3	P39724	118 aa		4.95	□□□□□ -1.62
OTU1	YFL044C	ALA1	P40825	983 aa	Known RBP	4.95	□□□□□ -1.62
OTU1	YFL044C	ERO1	Q03103	563 aa		4.95	□□□□□ -1.62
OTU1	YFL044C	RMT2	Q03305	412 aa		4.95	□□□□□ -1.62
OTU1	YFL044C	DIB1	Q06819	143 aa	Predicted RBP	4.95	□□□□□ -1.62
OTU1	YFL044C	PHM7	Q12252	991 aa		4.95	□□□□□ -1.62
OTU1	YFL044C	TOP1	P04786	769 aa		4.94	□□□□□ -1.62
OTU1	YFL044C	LPD1	P09624	499 aa	Known RBP	4.94	□□□□□ -1.62
OTU1	YFL044C	SUV3	P32580	737 aa		4.94	□□□□□ -1.62
OTU1	YFL044C	GLO3	P38682	493 aa	Known RBP	4.94	□□□□□ -1.62
OTU1	YFL044C	SHC1	P39000	512 aa		4.94	□□□□□ -1.62
OTU1	YFL044C	ATG1	P53104	897 aa		4.94	□□□□□ -1.62
OTU1	YFL044C	RAT1	Q02792	1006 aa	Known RBP	4.94	□□□□□ -1.62
OTU1	YFL044C	YPQ2	Q06328	317 aa		4.94	□□□□□ -1.62
OTU1	YFL044C	HKR1	P41809	1802 aa		4.94	□□□□□ -1.62
OTU1	YFL044C	KAR2	P16474	682 aa	Known RBP	4.93	□□□□□ -1.62
OTU1	YFL044C	SEC20	P28791	383 aa		4.93	□□□□□ -1.62
OTU1	YFL044C	NUP85	P46673	744 aa		4.93	□□□□□ -1.62
OTU1	YFL044C	YDR444W	Q04093	687 aa		4.93	□□□□□ -1.62
OTU1	YFL044C	CTI6	Q08923	506 aa		4.93	□□□□□ -1.62
OTU1	YFL044C	DLD1	P32891	587 aa		4.92	□□□□□ -1.62
OTU1	YFL044C	AKL1	P38080	1108 aa	Known RBP	4.92	□□□□□ -1.62
OTU1	YFL044C	YHL050C	P38721	697 aa		4.92	□□□□□ -1.62
OTU1	YFL044C	YHR219W	P38900	624 aa		4.92	□□□□□ -1.62
OTU1	YFL044C	QDR1	P40475	563 aa		4.92	□□□□□ -1.62
OTU1	YFL044C	YIL089W	P40500	205 aa		4.92	□□□□□ -1.62
OTU1	YFL044C	BUD27	P43573	796 aa	Known RBP RIP-Chip data	4.92	□□□□□ -1.62	not detected
OTU1	YFL044C	YFR016C	P43597	1233 aa	Known RBP	4.92	□□□□□ -1.62
OTU1	YFL044C	LSC2	P53312	427 aa		4.92	□□□□□ -1.62
OTU1	YFL044C	AOS1	Q06624	347 aa		4.92	□□□□□ -1.62
OTU1	YFL044C	FIG2	P25653	1609 aa		4.92	□□□□□ -1.62
OTU1	YFL044C	TRL1	P09880	827 aa	Known RBP	4.91	□□□□□ -1.62
OTU1	YFL044C	KCC4	P25389	1037 aa		4.91	□□□□□ -1.62
OTU1	YFL044C	YKU70	P32807	602 aa		4.91	□□□□□ -1.62
OTU1	YFL044C	SCD5	P34758	872 aa		4.91	□□□□□ -1.62
OTU1	YFL044C	YBR197C	P38306	217 aa		4.91	□□□□□ -1.62
OTU1	YFL044C	SSN3	P39073	555 aa		4.91	□□□□□ -1.62
OTU1	YFL044C	YVH1	Q02256	364 aa	Known RBP	4.91	□□□□□ -1.62
OTU1	YFL044C	IRC3	Q06683	689 aa		4.91	□□□□□ -1.62
OTU1	YFL044C	BDF2	Q07442	638 aa		4.91	□□□□□ -1.62
OTU1	YFL044C	ICL1	P28240	557 aa	Predicted RBP	4.9	□□□□□ -1.63
OTU1	YFL044C	ISC10	P32645	267 aa		4.9	□□□□□ -1.63
OTU1	YFL044C	SER1	P33330	395 aa	Known RBP	4.9	□□□□□ -1.63
OTU1	YFL044C	AHP1	P38013	176 aa	Known RBP	4.9	□□□□□ -1.63
OTU1	YFL044C	MDJ2	P42834	146 aa		4.9	□□□□□ -1.63
OTU1	YFL044C	PDS5	Q04264	1277 aa		4.9	□□□□□ -1.63
OTU1	YFL044C	SSP2	Q08646	371 aa		4.9	□□□□□ -1.63
OTU1	YFL044C	MSC6	Q08818	692 aa	Known RBP	4.9	□□□□□ -1.63
OTU1	YFL044C	GRX6	Q12438	231 aa		4.9	□□□□□ -1.63
OTU1	YFL044C	HXT5	P38695	592 aa		4.89	□□□□□ -1.63
OTU1	YFL044C	JJJ2	P46997	583 aa		4.89	□□□□□ -1.63
OTU1	YFL044C	YJR098C	P47139	656 aa		4.89	□□□□□ -1.63
OTU1	YFL044C	YLR346C	Q06139	101 aa		4.89	□□□□□ -1.63
OTU1	YFL044C	TIF6	Q12522	245 aa	Known RBP	4.89	□□□□□ -1.63
OTU1	YFL044C	LSO1	Q3E827	93 aa		4.89	□□□□□ -1.63
OTU1	YFL044C	NUM1	Q00402	2748 aa		4.89	□□□□□ -1.63
OTU1	YFL044C	GSC2	P40989	1895 aa		4.88	□□□□□ -1.63
OTU1	YFL044C	DAL1	P32375	460 aa		4.88	□□□□□ -1.63
OTU1	YFL044C	YTA6	P40328	754 aa		4.88	□□□□□ -1.63
OTU1	YFL044C	SPR3	P41901	512 aa		4.88	□□□□□ -1.63
OTU1	YFL044C	VTC4	P47075	721 aa		4.88	□□□□□ -1.63
OTU1	YFL044C	ACF4	P47129	309 aa		4.88	□□□□□ -1.63
OTU1	YFL044C	Q0182	Q9ZZW1	134 aa		4.88	□□□□□ -1.63
OTU1	YFL044C	SSK22	P25390	1331 aa	Predicted RBP	4.88	□□□□□ -1.63
OTU1	YFL044C	MRPL33	P20084	86 aa		4.87	□□□□□ -1.63
OTU1	YFL044C	IRE1	P32361	1115 aa		4.87	□□□□□ -1.63
OTU1	YFL044C	ASF1	P32447	279 aa		4.87	□□□□□ -1.63
OTU1	YFL044C	BOI1	P38041	980 aa	Known RBP	4.87	□□□□□ -1.63
OTU1	YFL044C	PPX1	P38698	397 aa		4.87	□□□□□ -1.63
OTU1	YFL044C	NCS6	P53088	359 aa		4.87	□□□□□ -1.63
OTU1	YFL044C	YGL082W	P53155	381 aa		4.87	□□□□□ -1.63
OTU1	YFL044C	UBP2	Q01476	1272 aa		4.87	□□□□□ -1.63
OTU1	YFL044C	UBP16	Q02863	499 aa		4.87	□□□□□ -1.63
OTU1	YFL044C	UTP4	Q06679	776 aa	Known RBP	4.87	□□□□□ -1.63
OTU1	YFL044C	ALE1	Q08548	619 aa		4.87	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 22 ms