RNA–Protein interactions for RNA: YER029C

SMB1, Transcript of Core Sm protein Sm B, yeast

Gene SMB1, Length 591 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SMB1	YER029C	GEF1	P37020	779 aa		4.64	□□□□□ -1.67
SMB1	YER029C	YIG1	Q08956	461 aa		4.64	□□□□□ -1.67
SMB1	YER029C	LPX1	Q12405	387 aa	Known RBP	4.64	□□□□□ -1.67
SMB1	YER029C	RPB10	P22139	70 aa		4.63	□□□□□ -1.67
SMB1	YER029C	PRO1	P32264	428 aa		4.63	□□□□□ -1.67
SMB1	YER029C	RRN6	P32786	894 aa		4.63	□□□□□ -1.67
SMB1	YER029C	MSH4	P40965	878 aa	Predicted RBP	4.63	□□□□□ -1.67
SMB1	YER029C	ALT1	P52893	592 aa		4.63	□□□□□ -1.67
SMB1	YER029C	RIM8	P53179	542 aa		4.63	□□□□□ -1.67
SMB1	YER029C	GSF2	Q04697	403 aa	Known RBP	4.63	□□□□□ -1.67
SMB1	YER029C	LSO1	Q3E827	93 aa		4.63	□□□□□ -1.67
SMB1	YER029C	PEX7	P39108	375 aa		4.62	□□□□□ -1.67
SMB1	YER029C	MRPL22	P53881	309 aa		4.62	□□□□□ -1.67
SMB1	YER029C	YVC1	Q12324	675 aa		4.62	□□□□□ -1.67
SMB1	YER029C	EAR1	Q03212	550 aa		4.61	□□□□□ -1.67
SMB1	YER029C	TAD3	Q9URQ3	322 aa		4.61	□□□□□ -1.67
SMB1	YER029C	RPL34A	P87262	121 aa	Predicted RBP	4.6	□□□□□ -1.67
SMB1	YER029C	CDC3	P32457	520 aa	Known RBP	4.59	□□□□□ -1.67
SMB1	YER029C	MEC3	Q02574	474 aa		4.59	□□□□□ -1.67
SMB1	YER029C	YDL177C	Q12257	170 aa		4.59	□□□□□ -1.67
SMB1	YER029C	HTS1	P07263	546 aa	Known RBP	4.58	□□□□□ -1.68
SMB1	YER029C	NFS1	P25374	497 aa		4.58	□□□□□ -1.68
SMB1	YER029C	PTC7	P38797	343 aa		4.58	□□□□□ -1.68
SMB1	YER029C	ALG6	Q12001	544 aa	Known RBP	4.58	□□□□□ -1.68
SMB1	YER029C	SOD2	P00447	233 aa		4.57	□□□□□ -1.68
SMB1	YER029C	TOD6	P34219	525 aa		4.57	□□□□□ -1.68
SMB1	YER029C	REI1	P38344	393 aa	Predicted RBP	4.57	□□□□□ -1.68
SMB1	YER029C	CTR9	P89105	1077 aa		4.57	□□□□□ -1.68
SMB1	YER029C	KAR5	Q04746	504 aa		4.57	□□□□□ -1.68
SMB1	YER029C	FUR4	P05316	633 aa	Known RBP	4.56	□□□□□ -1.68
SMB1	YER029C	TRL1	P09880	827 aa	Known RBP	4.56	□□□□□ -1.68
SMB1	YER029C	NPR1	P22211	790 aa		4.56	□□□□□ -1.68
SMB1	YER029C	SMY2	P32909	740 aa	Known RBP	4.56	□□□□□ -1.68
SMB1	YER029C	ABZ1	P37254	787 aa	Predicted RBP	4.56	□□□□□ -1.68
SMB1	YER029C	ATG1	P53104	897 aa		4.56	□□□□□ -1.68
SMB1	YER029C	RIM11	P38615	370 aa		4.55	□□□□□ -1.68
SMB1	YER029C	GTS1	P40956	396 aa		4.55	□□□□□ -1.68
SMB1	YER029C	UTP22	P53254	1237 aa	Predicted RBP	4.55	□□□□□ -1.68
SMB1	YER029C	CMR1	Q12510	522 aa	Known RBP	4.55	□□□□□ -1.68
SMB1	YER029C	ETP1	P38748	585 aa	Known RBP	4.54	□□□□□ -1.68
SMB1	YER029C	QDR1	P40475	563 aa		4.54	□□□□□ -1.68
SMB1	YER029C	YPL277C	Q08989	487 aa		4.54	□□□□□ -1.68
SMB1	YER029C	COB	P00163	385 aa		4.53	□□□□□ -1.68
SMB1	YER029C	RPS13	P05756	151 aa	Known RBP	4.53	□□□□□ -1.68
SMB1	YER029C	NNK1	P36003	928 aa		4.53	□□□□□ -1.68
SMB1	YER029C	YPT53	P36019	220 aa		4.53	□□□□□ -1.68
SMB1	YER029C	ECM2	P38241	364 aa	Known RBP	4.53	□□□□□ -1.68
SMB1	YER029C	GLO3	P38682	493 aa	Known RBP	4.53	□□□□□ -1.68
SMB1	YER029C	ERP5	P38819	212 aa		4.53	□□□□□ -1.68
SMB1	YER029C	MDJ2	P42834	146 aa		4.53	□□□□□ -1.68
SMB1	YER029C	ELA1	P53861	379 aa	Predicted RBP	4.53	□□□□□ -1.68
SMB1	YER029C	CLU1	Q03690	1277 aa	Known RBP	4.53	□□□□□ -1.68
SMB1	YER029C	YBL113C	Q7M4S9	792 aa		4.53	□□□□□ -1.68
SMB1	YER029C	TUB2	P02557	457 aa	Known RBP	4.52	□□□□□ -1.69
SMB1	YER029C	PRP5	P21372	849 aa	Predicted RBP	4.52	□□□□□ -1.69
SMB1	YER029C	SSF1	P38789	453 aa	Predicted RBP	4.52	□□□□□ -1.69
SMB1	YER029C	ACF4	P47129	309 aa		4.52	□□□□□ -1.69
SMB1	YER029C	HAT1	Q12341	374 aa		4.52	□□□□□ -1.69
SMB1	YER029C	YGR045C	P53229	120 aa		4.51	□□□□□ -1.69
SMB1	YER029C	MNL2	Q12205	849 aa		4.51	□□□□□ -1.69
SMB1	YER029C	PNS1	Q12412	539 aa		4.51	□□□□□ -1.69
SMB1	YER029C	SHM2	P37291	469 aa	Known RBP	4.5	□□□□□ -1.69
SMB1	YER029C	GRS1	P38088	690 aa	Known RBP	4.5	□□□□□ -1.69
SMB1	YER029C	FOL2	P51601	243 aa	Known RBP	4.5	□□□□□ -1.69
SMB1	YER029C	SNO2	P53823	222 aa		4.5	□□□□□ -1.69
SMB1	YER029C	AVO1	Q08236	1176 aa		4.5	□□□□□ -1.69
SMB1	YER029C	FRT1	Q99332	602 aa		4.5	□□□□□ -1.69
SMB1	YER029C	YLR358C	O13565	187 aa		4.49	□□□□□ -1.69
SMB1	YER029C	CTS1	P29029	562 aa		4.49	□□□□□ -1.69
SMB1	YER029C	UFD2	P54860	961 aa		4.49	□□□□□ -1.69
SMB1	YER029C	TRS120	Q04183	1289 aa		4.49	□□□□□ -1.69
SMB1	YER029C	PUS7	Q08647	676 aa	Known RBP	4.49	□□□□□ -1.69
SMB1	YER029C	DUR3	P33413	735 aa		4.48	□□□□□ -1.69
SMB1	YER029C	RSC4	Q02206	625 aa		4.48	□□□□□ -1.69
SMB1	YER029C	NUT2	Q06213	157 aa		4.48	□□□□□ -1.69
SMB1	YER029C	ARL1	P38116	183 aa	Known RBP	4.47	□□□□□ -1.69
SMB1	YER029C	TPP1	Q03796	238 aa		4.47	□□□□□ -1.69
SMB1	YER029C	GPI13	Q07830	1017 aa		4.47	□□□□□ -1.69
SMB1	YER029C	PRE10	P21242	288 aa	Known RBP RIP-Chip data	4.46	□□□□□ -1.7	not detected
SMB1	YER029C	TY1A-LR4	P0C2I8	440 aa	Known RBP	4.44	□□□□□ -1.7
SMB1	YER029C	TY1A-DR6	P0CX70	440 aa		4.44	□□□□□ -1.7
SMB1	YER029C	TY1A-ER1	P0CX71	440 aa		4.44	□□□□□ -1.7
SMB1	YER029C	TY1A-LR2	P0CX72	440 aa		4.44	□□□□□ -1.7
SMB1	YER029C	TY1A-PL	P0CX73	440 aa		4.44	□□□□□ -1.7
SMB1	YER029C	TY1A-JR1	P0CX74	440 aa		4.44	□□□□□ -1.7
SMB1	YER029C	TY1A-LR3	P0CX75	440 aa		4.44	□□□□□ -1.7
SMB1	YER029C	TY1A-ML2	P0CX76	440 aa		4.44	□□□□□ -1.7
SMB1	YER029C	YHL012W	P38709	493 aa		4.44	□□□□□ -1.7
SMB1	YER029C	YHL050C	P38721	697 aa		4.44	□□□□□ -1.7
SMB1	YER029C	YHR219W	P38900	624 aa		4.44	□□□□□ -1.7
SMB1	YER029C	SEN54	Q02825	467 aa	Predicted RBP	4.44	□□□□□ -1.7
SMB1	YER029C	TY1A-GR1	Q12085	440 aa		4.44	□□□□□ -1.7
SMB1	YER029C	TY1A-PR3	Q6Q5H1	440 aa	Known RBP	4.44	□□□□□ -1.7
SMB1	YER029C	TY1A-OL	Q92392	440 aa	Known RBP	4.44	□□□□□ -1.7
SMB1	YER029C	SAM35	P14693	329 aa		4.43	□□□□□ -1.7
SMB1	YER029C	SAP155	P43612	1002 aa		4.43	□□□□□ -1.7
SMB1	YER029C	CDC55	Q00362	526 aa		4.43	□□□□□ -1.7
SMB1	YER029C	NOP8	Q08287	484 aa	Predicted RBP	4.43	□□□□□ -1.7
SMB1	YER029C	MDL2	P33311	773 aa		4.42	□□□□□ -1.7
SMB1	YER029C	PPX1	P38698	397 aa		4.42	□□□□□ -1.7

Retrieved 100 of 5,963 RNA–protein pairs in 86.2 ms