RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 CLUAP1Q96AJ1 413 aa6.83□□□□□ -1.32
SCN1A-216ENST00000637968 ROCK2O75116 1388 aaKnown RBP6.83□□□□□ -1.32
SCN1A-216ENST00000637968 JAKMIP3Q5VZ66 844 aa6.83□□□□□ -1.32
SCN1A-216ENST00000637968 FILIP1Q7Z7B0 1213 aa6.83□□□□□ -1.32
SCN1A-216ENST00000637968 MICALL1Q8N3F8 863 aa6.83□□□□□ -1.32
SCN1A-216ENST00000637968 SPC24Q8NBT2 197 aa6.83□□□□□ -1.32
SCN1A-216ENST00000637968 IRAK4Q9NWZ3 460 aa6.83□□□□□ -1.32
SCN1A-216ENST00000637968 IRX1P78414 480 aaPredicted RBP6.82□□□□□ -1.32
SCN1A-216ENST00000637968 HSP90B2PQ58FF3 399 aa6.82□□□□□ -1.32
SCN1A-216ENST00000637968 KIF7Q2M1P5 1343 aa6.82□□□□□ -1.32
SCN1A-216ENST00000637968 ERCC3P19447 782 aa6.82□□□□□ -1.32
SCN1A-216ENST00000637968 GYS2P54840 703 aa6.82□□□□□ -1.32
SCN1A-216ENST00000637968 MUM1L1Q5H9M0 696 aa6.82□□□□□ -1.32
SCN1A-216ENST00000637968 MMS22LQ6ZRQ5 1243 aa6.82□□□□□ -1.32
SCN1A-216ENST00000637968 JPH4Q96JJ6 628 aa6.82□□□□□ -1.32
SCN1A-216ENST00000637968 SMARCA4P51532 1647 aa6.82□□□□□ -1.32
SCN1A-216ENST00000637968 HDAC1Q13547 482 aaPredicted RBP6.82□□□□□ -1.32
SCN1A-216ENST00000637968 RBBP5Q15291 538 aaKnown RBP6.82□□□□□ -1.32
SCN1A-216ENST00000637968 SPATS2LQ9NUQ6 558 aaKnown RBP6.82□□□□□ -1.32
SCN1A-216ENST00000637968 HDGFP51858 240 aaKnown RBP6.81□□□□□ -1.32
SCN1A-216ENST00000637968 NCBP1Q09161 790 aaKnown RBP6.81□□□□□ -1.32
SCN1A-216ENST00000637968 GNL2Q13823 731 aaKnown RBP6.81□□□□□ -1.32
SCN1A-216ENST00000637968 C17orf53Q8N3J3 647 aaPredicted RBP6.81□□□□□ -1.32
SCN1A-216ENST00000637968 CCDC34Q96HJ3 373 aa6.81□□□□□ -1.32
SCN1A-216ENST00000637968 A0A1B0GUA9 196 aa6.81□□□□□ -1.32
SCN1A-216ENST00000637968 CTAGE5O15320 804 aa6.81□□□□□ -1.32
SCN1A-216ENST00000637968 ST18O60284 1047 aa6.81□□□□□ -1.32
SCN1A-216ENST00000637968 DNAJC21Q5F1R6 531 aaKnown RBP6.81□□□□□ -1.32
SCN1A-216ENST00000637968 KIAA1328Q86T90 577 aa6.81□□□□□ -1.32
SCN1A-216ENST00000637968 ERCC4Q92889 916 aaPredicted RBP6.81□□□□□ -1.32
SCN1A-216ENST00000637968 SNX21Q969T3 373 aa6.81□□□□□ -1.32
SCN1A-216ENST00000637968 SGSM3Q96HU1 749 aa6.81□□□□□ -1.32
SCN1A-216ENST00000637968 TMX4Q9H1E5 349 aaPredicted RBP6.81□□□□□ -1.32
SCN1A-216ENST00000637968 CWC22Q9HCG8 908 aaKnown RBP6.81□□□□□ -1.32
SCN1A-216ENST00000637968 RBM27Q9P2N5 1060 aaKnown RBP6.81□□□□□ -1.32
SCN1A-216ENST00000637968 IRF6O14896 467 aa6.8□□□□□ -1.32
SCN1A-216ENST00000637968 TRIM66O15016 1216 aa6.8□□□□□ -1.32
SCN1A-216ENST00000637968 PDZRN3Q9UPQ7 1066 aa6.8□□□□□ -1.32
SCN1A-216ENST00000637968 IPO8O15397 1037 aaKnown RBP6.8□□□□□ -1.32
SCN1A-216ENST00000637968 EFCAB2Q5VUJ9 269 aa6.8□□□□□ -1.32
SCN1A-216ENST00000637968 CEP135Q66GS9 1140 aa6.8□□□□□ -1.32
SCN1A-216ENST00000637968 ERC1Q8IUD2 1116 aa6.8□□□□□ -1.32
SCN1A-216ENST00000637968 RPUSD2Q8IZ73 545 aaKnown RBP6.8□□□□□ -1.32
SCN1A-216ENST00000637968 UBXN4Q92575 508 aa6.8□□□□□ -1.32
SCN1A-216ENST00000637968 ERO1AQ96HE7 468 aa6.8□□□□□ -1.32
SCN1A-216ENST00000637968 NAP1L1P55209 391 aaKnown RBP6.8□□□□□ -1.32
SCN1A-216ENST00000637968 PTPN14Q15678 1187 aa6.8□□□□□ -1.32
SCN1A-216ENST00000637968 FOXD4L5Q5VV16 416 aaPredicted RBP6.8□□□□□ -1.32
SCN1A-216ENST00000637968 ANKRD18AQ8IVF6 992 aa6.8□□□□□ -1.32
SCN1A-216ENST00000637968 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.8□□□□□ -1.32
SCN1A-216ENST00000637968 FOXD4L4Q8WXT5 416 aaPredicted RBP6.8□□□□□ -1.32
SCN1A-216ENST00000637968 TACO1Q9BSH4 297 aaKnown RBP6.8□□□□□ -1.32
SCN1A-216ENST00000637968 EIF2AK3Q9NZJ5 1116 aaKnown RBP6.8□□□□□ -1.32
SCN1A-216ENST00000637968 ZSCAN21Q9Y5A6 473 aaPredicted RBP6.8□□□□□ -1.32
SCN1A-216ENST00000637968 MAP3K1Q13233 1512 aa6.79□□□□□ -1.32
SCN1A-216ENST00000637968 EIF3JO75822 258 aaKnown RBP6.79□□□□□ -1.32
SCN1A-216ENST00000637968 WWC2Q6AWC2 1192 aa6.79□□□□□ -1.32
SCN1A-216ENST00000637968 SRLQ86TD4 932 aa6.79□□□□□ -1.32
SCN1A-216ENST00000637968 NUTM1Q86Y26 1132 aa6.79□□□□□ -1.32
SCN1A-216ENST00000637968 JMYQ8N9B5 988 aa6.79□□□□□ -1.32
SCN1A-216ENST00000637968 CEP89Q96ST8 783 aa6.79□□□□□ -1.32
SCN1A-216ENST00000637968 STK31Q9BXU1 1019 aa6.79□□□□□ -1.32
SCN1A-216ENST00000637968 VEZTQ9HBM0 779 aa6.79□□□□□ -1.32
SCN1A-216ENST00000637968 SLU7O95391 586 aaKnown RBP6.79□□□□□ -1.32
SCN1A-216ENST00000637968 ZRSR2Q15696 482 aaKnown RBP6.79□□□□□ -1.32
SCN1A-216ENST00000637968 CDCA8Q53HL2 280 aa6.79□□□□□ -1.32
SCN1A-216ENST00000637968 MYO6Q9UM54 1294 aa6.79□□□□□ -1.32
SCN1A-216ENST00000637968 COG6Q9Y2V7 657 aa6.79□□□□□ -1.32
SCN1A-216ENST00000637968 PLEKHH1Q9ULM0 1364 aa6.79□□□□□ -1.32
SCN1A-216ENST00000637968 USP19O94966 1318 aa6.79□□□□□ -1.32
SCN1A-216ENST00000637968 SCAPERQ9BY12 1400 aa6.79□□□□□ -1.32
SCN1A-216ENST00000637968 CDR1P51861 262 aa6.79□□□□□ -1.32
SCN1A-216ENST00000637968 FBXO18Q8NFZ0 1043 aa6.79□□□□□ -1.32
SCN1A-216ENST00000637968 ITFG2Q969R8 447 aa6.79□□□□□ -1.32
SCN1A-216ENST00000637968 ZKSCAN7Q9P0L1 754 aaPredicted RBP6.79□□□□□ -1.32
SCN1A-216ENST00000637968 CTIFO43310 598 aaKnown RBP6.78□□□□□ -1.32
SCN1A-216ENST00000637968 NEFHP12036 1026 aa6.78□□□□□ -1.32
SCN1A-216ENST00000637968 WDR63Q8IWG1 891 aa6.78□□□□□ -1.32
SCN1A-216ENST00000637968 PRDM16Q9HAZ2 1276 aa6.78□□□□□ -1.32
SCN1A-216ENST00000637968 NBPF8Q3BBV2 869 aa6.78□□□□□ -1.32
SCN1A-216ENST00000637968 SH3GL3Q99963 347 aa6.78□□□□□ -1.32
SCN1A-216ENST00000637968 SLC24A3Q9HC58 644 aa6.78□□□□□ -1.32
SCN1A-216ENST00000637968 SPTLC3Q9NUV7 552 aa6.78□□□□□ -1.32
SCN1A-216ENST00000637968 POLKQ9UBT6 870 aa6.78□□□□□ -1.32
SCN1A-216ENST00000637968 NOL12Q9UGY1 213 aaKnown RBP eCLIP6.78□□□□□ -1.32
SCN1A-216ENST00000637968 MKRN1Q9UHC7 482 aaKnown RBP6.78□□□□□ -1.32
SCN1A-216ENST00000637968 ANAPC4Q9UJX5 808 aa6.78□□□□□ -1.32
SCN1A-216ENST00000637968 NCOA2Q15596 1464 aa6.78□□□□□ -1.32
SCN1A-216ENST00000637968 KIAA0754O94854 1291 aa6.78□□□□□ -1.32
SCN1A-216ENST00000637968 MAFGO15525 162 aa6.77□□□□□ -1.33
SCN1A-216ENST00000637968 NEDD9Q14511 834 aa6.77□□□□□ -1.33
SCN1A-216ENST00000637968 EFCAB13Q8IY85 973 aa6.77□□□□□ -1.33
SCN1A-216ENST00000637968 GCKP35557 465 aa6.77□□□□□ -1.33
SCN1A-216ENST00000637968 HOMER1Q86YM7 354 aa6.77□□□□□ -1.33
SCN1A-216ENST00000637968 TRIM6Q9C030 488 aaPredicted RBP6.77□□□□□ -1.33
SCN1A-216ENST00000637968 CCDC171Q6TFL3 1326 aa6.77□□□□□ -1.33
SCN1A-216ENST00000637968 PDE3AQ14432 1141 aa6.77□□□□□ -1.33
SCN1A-216ENST00000637968 NCOA1Q15788 1441 aa6.77□□□□□ -1.33
SCN1A-216ENST00000637968 ERLIN2O94905 339 aa6.77□□□□□ -1.33
SCN1A-216ENST00000637968 POLD1P28340 1107 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms