RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 USP35Q9P2H5 1018 aa26.94■■□□□ 1.9
CLN3-260ENST00000637578 ANKRD36BQ8N2N9 1353 aa26.93■■□□□ 1.9
CLN3-260ENST00000637578 ZBTB7CA1YPR0 619 aa26.93■■□□□ 1.9
CLN3-260ENST00000637578 CRB1P82279 1406 aa26.92■■□□□ 1.9
CLN3-260ENST00000637578 SOX12O15370 315 aa26.92■■□□□ 1.9
CLN3-260ENST00000637578 OVOS2A0A0J9YW53 1432 aa26.9■■□□□ 1.9
CLN3-260ENST00000637578 OVOS2Q6IE36 1432 aa26.9■■□□□ 1.9
CLN3-260ENST00000637578 ABCC6O95255 1503 aa26.89■■□□□ 1.9
CLN3-260ENST00000637578 WDR17Q8IZU2 1322 aa26.88■■□□□ 1.89
CLN3-260ENST00000637578 FAM182BQ5T319 152 aa26.85■■□□□ 1.89
CLN3-260ENST00000637578 TOM1L2Q6ZVM7 507 aa26.84■■□□□ 1.89
CLN3-260ENST00000637578 EIF4G2P78344 907 aaKnown RBP eCLIP26.82■■□□□ 1.881e-9■■■■□ 22.4
CLN3-260ENST00000637578 SF3B2Q13435 895 aaKnown RBP26.82■■□□□ 1.88
CLN3-260ENST00000637578 CARD10Q9BWT7 1032 aa26.82■■□□□ 1.88
CLN3-260ENST00000637578 RGPD5Q99666 1765 aa26.81■■□□□ 1.88
CLN3-260ENST00000637578 FAM196AQ6ZSG2 479 aa26.81■■□□□ 1.88
CLN3-260ENST00000637578 COG3Q96JB2 828 aa26.81■■□□□ 1.88
CLN3-260ENST00000637578 FYB1O15117 783 aa26.8■■□□□ 1.88
CLN3-260ENST00000637578 DEFB132Q7Z7B7 95 aa26.8■■□□□ 1.88
CLN3-260ENST00000637578 PDE3BQ13370 1112 aa26.8■■□□□ 1.88
CLN3-260ENST00000637578 PARP4Q9UKK3 1724 aaKnown RBP26.79■■□□□ 1.88
CLN3-260ENST00000637578 HSPA5P11021 654 aaKnown RBP26.79■■□□□ 1.88
CLN3-260ENST00000637578 CARD14Q9BXL6 1004 aa26.78■■□□□ 1.88
CLN3-260ENST00000637578 ERBB3P21860 1342 aa26.77■■□□□ 1.88
CLN3-260ENST00000637578 CSB-PGBD3P0DP91 1061 aa26.77■■□□□ 1.88
CLN3-260ENST00000637578 CDCA7Q9BWT1 371 aaPredicted RBP26.77■■□□□ 1.88
CLN3-260ENST00000637578 MYOM1P52179 1685 aa26.77■■□□□ 1.88
CLN3-260ENST00000637578 LTN1O94822 1766 aa26.76■■□□□ 1.87
CLN3-260ENST00000637578 IP6K1Q92551 441 aa26.75■■□□□ 1.87
CLN3-260ENST00000637578 CCDC7Q96M83 1385 aa26.75■■□□□ 1.87
CLN3-260ENST00000637578 DISP2A7MBM2 1401 aa26.74■■□□□ 1.87
CLN3-260ENST00000637578 BAG6P46379 1132 aa26.73■■□□□ 1.87
CLN3-260ENST00000637578 GGNBP2Q9H3C7 697 aa26.73■■□□□ 1.87
CLN3-260ENST00000637578 DDB1Q16531 1140 aa26.72■■□□□ 1.87
CLN3-260ENST00000637578 ANKRD24Q8TF21 1146 aa26.72■■□□□ 1.87
CLN3-260ENST00000637578 RGPD1P0DJD0 1748 aa26.72■■□□□ 1.87
CLN3-260ENST00000637578 MAP3K19Q56UN5 1328 aa26.72■■□□□ 1.87
CLN3-260ENST00000637578 C11orf95C9JLR9 678 aaPredicted RBP26.71■■□□□ 1.87
CLN3-260ENST00000637578 FBLN1P23142 703 aa26.71■■□□□ 1.87
CLN3-260ENST00000637578 TRIM37O94972 964 aa26.71■■□□□ 1.87
CLN3-260ENST00000637578 LRRC37A3O60309 1634 aa26.7■■□□□ 1.87
CLN3-260ENST00000637578 WNK3Q9BYP7 1800 aa26.69■■□□□ 1.86
CLN3-260ENST00000637578 NSD3Q9BZ95 1437 aa26.68■■□□□ 1.86
CLN3-260ENST00000637578 NLRP2Q9NX02 1062 aa26.68■■□□□ 1.86
CLN3-260ENST00000637578 TNS1Q9HBL0 1735 aaKnown RBP26.68■■□□□ 1.86
CLN3-260ENST00000637578 HOXC9P31274 260 aa26.67■■□□□ 1.86
CLN3-260ENST00000637578 PEAK1Q9H792 1746 aa26.67■■□□□ 1.86
CLN3-260ENST00000637578 EN1Q05925 392 aaPredicted RBP26.67■■□□□ 1.86
CLN3-260ENST00000637578 OVOS2A0A0G2JMS6 1433 aa26.66■■□□□ 1.86
CLN3-260ENST00000637578 MARCH10Q8NA82 808 aaPredicted RBP26.66■■□□□ 1.86
CLN3-260ENST00000637578 BCL9O00512 1426 aa26.65■■□□□ 1.86
CLN3-260ENST00000637578 EXOC5O00471 708 aa26.64■■□□□ 1.86
CLN3-260ENST00000637578 AMPHP49418 695 aa26.64■■□□□ 1.86
CLN3-260ENST00000637578 CAMKK2Q96RR4 588 aa26.64■■□□□ 1.86
CLN3-260ENST00000637578 RTL1A6NKG5 1358 aa26.64■■□□□ 1.86
CLN3-260ENST00000637578 RRS1Q15050 365 aaKnown RBP26.63■■□□□ 1.85
CLN3-260ENST00000637578 KIF20BQ96Q89 1820 aa26.63■■□□□ 1.85
CLN3-260ENST00000637578 APBA3O96018 575 aa26.62■■□□□ 1.85
CLN3-260ENST00000637578 IL2RBP14784 551 aa26.62■■□□□ 1.85
CLN3-260ENST00000637578 CGNL1Q0VF96 1302 aa26.61■■□□□ 1.85
CLN3-260ENST00000637578 POLR3GLQ9BT43 218 aa26.61■■□□□ 1.85
CLN3-260ENST00000637578 TNS2Q63HR2 1409 aa26.6■■□□□ 1.85
CLN3-260ENST00000637578 PARD3Q8TEW0 1356 aa26.6■■□□□ 1.85
CLN3-260ENST00000637578 EZH2Q15910 746 aaKnown RBP26.59■■□□□ 1.85
CLN3-260ENST00000637578 LTV1Q96GA3 475 aaPredicted RBP26.59■■□□□ 1.85
CLN3-260ENST00000637578 KIF24Q5T7B8 1368 aa26.59■■□□□ 1.85
CLN3-260ENST00000637578 FAM208AQ9UK61 1670 aaKnown RBP26.58■■□□□ 1.85
CLN3-260ENST00000637578 PANK3Q9H999 370 aa26.57■■□□□ 1.84
CLN3-260ENST00000637578 BCL11BQ9C0K0 894 aaPredicted RBP26.55■■□□□ 1.84
CLN3-260ENST00000637578 INSRP06213 1382 aa26.55■■□□□ 1.84
CLN3-260ENST00000637578 FLT4P35916 1363 aa26.54■■□□□ 1.84
CLN3-260ENST00000637578 SBF2Q86WG5 1849 aa26.54■■□□□ 1.84
CLN3-260ENST00000637578 HSP90AB2PQ58FF8 381 aa26.54■■□□□ 1.84
CLN3-260ENST00000637578 PTF1AQ7RTS3 328 aa26.53■■□□□ 1.84
CLN3-260ENST00000637578 PLSCR1O15162 318 aa26.52■■□□□ 1.84
CLN3-260ENST00000637578 NBPF6Q5VWK0 638 aa26.51■■□□□ 1.83
CLN3-260ENST00000637578 NBPF4Q96M43 638 aa26.51■■□□□ 1.83
CLN3-260ENST00000637578 EMILIN1Q9Y6C2 1016 aa26.51■■□□□ 1.83
CLN3-260ENST00000637578 SRCAPQ6ZRS2 3230 aa26.5■■□□□ 1.83
CLN3-260ENST00000637578 KIF7Q2M1P5 1343 aa26.49■■□□□ 1.83
CLN3-260ENST00000637578 SMG6Q86US8 1419 aaKnown RBP26.48■■□□□ 1.83
CLN3-260ENST00000637578 RREB1Q92766 1687 aa26.47■■□□□ 1.83
CLN3-260ENST00000637578 RGPD2P0DJD1 1756 aa26.46■■□□□ 1.83
CLN3-260ENST00000637578 POLKQ9UBT6 870 aa26.46■■□□□ 1.83
CLN3-260ENST00000637578 WASHC2AQ641Q2 1341 aa26.46■■□□□ 1.83
CLN3-260ENST00000637578 NSD2O96028 1365 aa26.45■■□□□ 1.83
CLN3-260ENST00000637578 ANKRD26Q9UPS8 1709 aa26.45■■□□□ 1.83
CLN3-260ENST00000637578 RGPD3A6NKT7 1758 aaPredicted RBP26.45■■□□□ 1.82
CLN3-260ENST00000637578 RGPD4Q7Z3J3 1758 aa26.45■■□□□ 1.82
CLN3-260ENST00000637578 PSDA5PKW4 1024 aaPredicted RBP26.44■■□□□ 1.82
CLN3-260ENST00000637578 KCNQ2O43526 872 aa26.44■■□□□ 1.82
CLN3-260ENST00000637578 MEGF6O75095 1541 aa26.44■■□□□ 1.82
CLN3-260ENST00000637578 ZEB1P37275 1124 aaPredicted RBP26.41■■□□□ 1.82
CLN3-260ENST00000637578 R3HDM1Q15032 1099 aaKnown RBP26.41■■□□□ 1.82
CLN3-260ENST00000637578 PROM2Q8N271 834 aa26.41■■□□□ 1.82
CLN3-260ENST00000637578 USHBP1Q8N6Y0 703 aa26.41■■□□□ 1.82
CLN3-260ENST00000637578 ZCRB1Q8TBF4 217 aaKnown RBP26.41■■□□□ 1.82
CLN3-260ENST00000637578 NUP188Q5SRE5 1749 aa26.41■■□□□ 1.82
CLN3-260ENST00000637578 PPM1GO15355 546 aaPredicted RBP26.41■■□□□ 1.82
CLN3-260ENST00000637578 DDX54Q8TDD1 881 aaKnown RBP26.41■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms