RNA–Protein interactions for RNA: ENST00000636876.1

CLN6-216, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5

Gene CLN6, Length 655 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-216ENST00000636876 EMILIN1Q9Y6C2 1016 aa21.71■■□□□ 1.07
CLN6-216ENST00000636876 NWD2Q9ULI1 1742 aa21.71■■□□□ 1.07
CLN6-216ENST00000636876 RTL1A6NKG5 1358 aa21.71■■□□□ 1.07
CLN6-216ENST00000636876 CAMTA1Q9Y6Y1 1673 aa21.7■■□□□ 1.06
CLN6-216ENST00000636876 AMPHP49418 695 aa21.7■■□□□ 1.06
CLN6-216ENST00000636876 IP6K1Q92551 441 aa21.7■■□□□ 1.06
CLN6-216ENST00000636876 BTG4Q9NY30 223 aa21.7■■□□□ 1.06
CLN6-216ENST00000636876 KIF24Q5T7B8 1368 aa21.7■■□□□ 1.06
CLN6-216ENST00000636876 SMG6Q86US8 1419 aaKnown RBP21.7■■□□□ 1.06
CLN6-216ENST00000636876 PEAK1Q9H792 1746 aa21.69■■□□□ 1.06
CLN6-216ENST00000636876 AXIN2Q9Y2T1 843 aa21.69■■□□□ 1.06
CLN6-216ENST00000636876 HOXC9P31274 260 aa21.68■■□□□ 1.06
CLN6-216ENST00000636876 RALBP1Q15311 655 aa21.68■■□□□ 1.06
CLN6-216ENST00000636876 FLT4P35916 1363 aa21.68■■□□□ 1.06
CLN6-216ENST00000636876 BCL9LQ86UU0 1499 aa21.68■■□□□ 1.06
CLN6-216ENST00000636876 NRAPQ86VF7 1730 aa21.67■■□□□ 1.06
CLN6-216ENST00000636876 USP21Q9UK80 565 aa21.67■■□□□ 1.06
CLN6-216ENST00000636876 RGPD5Q99666 1765 aa21.66■■□□□ 1.06
CLN6-216ENST00000636876 BLMP54132 1417 aaPredicted RBP21.66■■□□□ 1.06
CLN6-216ENST00000636876 PPM1GO15355 546 aaPredicted RBP21.66■■□□□ 1.06
CLN6-216ENST00000636876 UNC5CLQ8IV45 518 aa21.66■■□□□ 1.06
CLN6-216ENST00000636876 COL5A2P05997 1499 aaPredicted RBP21.65■■□□□ 1.06
CLN6-216ENST00000636876 CDK12Q9NYV4 1490 aaPredicted RBP21.65■■□□□ 1.06
CLN6-216ENST00000636876 PPP2R1AP30153 589 aa21.65■■□□□ 1.06
CLN6-216ENST00000636876 PRKRIP1Q9H875 184 aaPredicted RBP21.65■■□□□ 1.06
CLN6-216ENST00000636876 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.65■■□□□ 1.06
CLN6-216ENST00000636876 INSRP06213 1382 aa21.64■■□□□ 1.06
CLN6-216ENST00000636876 MTHFSP49914 203 aa21.64■■□□□ 1.05
CLN6-216ENST00000636876 HSP90AB2PQ58FF8 381 aa21.63■■□□□ 1.05
CLN6-216ENST00000636876 STRN4Q9NRL3 753 aa21.63■■□□□ 1.05
CLN6-216ENST00000636876 EVA1CP58658 441 aa21.62■■□□□ 1.05
CLN6-216ENST00000636876 ANKRD24Q8TF21 1146 aa21.62■■□□□ 1.05
CLN6-216ENST00000636876 UPF1Q92900 1129 aaKnown RBP eCLIP21.62■■□□□ 1.05
CLN6-216ENST00000636876 ERBB3P21860 1342 aa21.61■■□□□ 1.05
CLN6-216ENST00000636876 RXRBP28702 533 aa21.61■■□□□ 1.05
CLN6-216ENST00000636876 RGS12O14924 1447 aa21.61■■□□□ 1.05
CLN6-216ENST00000636876 ATRNO75882 1429 aa21.61■■□□□ 1.05
CLN6-216ENST00000636876 WDR17Q8IZU2 1322 aa21.6■■□□□ 1.05
CLN6-216ENST00000636876 MYBBP1AQ9BQG0 1328 aaKnown RBP21.6■■□□□ 1.05
CLN6-216ENST00000636876 ANP32CO43423 234 aa21.6■■□□□ 1.05
CLN6-216ENST00000636876 VPS72Q15906 364 aa21.6■■□□□ 1.05
CLN6-216ENST00000636876 LARP1Q6PKG0 1096 aaKnown RBP21.59■■□□□ 1.05
CLN6-216ENST00000636876 LTV1Q96GA3 475 aaPredicted RBP21.59■■□□□ 1.05
CLN6-216ENST00000636876 TRPC5Q9UL62 973 aaPredicted RBP21.59■■□□□ 1.05
CLN6-216ENST00000636876 CSB-PGBD3P0DP91 1061 aa21.58■■□□□ 1.05
CLN6-216ENST00000636876 QTRT2Q9H974 415 aaKnown RBP21.58■■□□□ 1.05
CLN6-216ENST00000636876 CRB1P82279 1406 aa21.56■■□□□ 1.04
CLN6-216ENST00000636876 EIF4A2Q14240 407 aaKnown RBP21.56■■□□□ 1.04
CLN6-216ENST00000636876 FAM208AQ9UK61 1670 aaKnown RBP21.56■■□□□ 1.04
CLN6-216ENST00000636876 SPATA31A5Q5VU36 1347 aa21.55■■□□□ 1.04
CLN6-216ENST00000636876 SPATA31A7Q8IWB4 1347 aa21.55■■□□□ 1.04
CLN6-216ENST00000636876 DIEXFQ68CQ4 756 aaKnown RBP21.55■■□□□ 1.04
CLN6-216ENST00000636876 TOM1L2Q6ZVM7 507 aa21.55■■□□□ 1.04
CLN6-216ENST00000636876 CFAP53Q96M91 514 aa21.55■■□□□ 1.04
CLN6-216ENST00000636876 CCDC9Q9Y3X0 531 aaKnown RBP21.55■■□□□ 1.04
CLN6-216ENST00000636876 COL3A1P02461 1466 aaPredicted RBP21.55■■□□□ 1.04
CLN6-216ENST00000636876 CARD10Q9BWT7 1032 aa21.54■■□□□ 1.04
CLN6-216ENST00000636876 NLRP2Q9NX02 1062 aa21.54■■□□□ 1.04
CLN6-216ENST00000636876 SPATA31A1Q5TZJ5 1347 aa21.54■■□□□ 1.04
CLN6-216ENST00000636876 GJD4Q96KN9 370 aaPredicted RBP21.53■■□□□ 1.04
CLN6-216ENST00000636876 IL13P35225 146 aa21.52■■□□□ 1.04
CLN6-216ENST00000636876 GLI3P10071 1580 aa21.52■■□□□ 1.04
CLN6-216ENST00000636876 DIAPH1O60610 1272 aaKnown RBP21.51■■□□□ 1.03
CLN6-216ENST00000636876 NBPF6Q5VWK0 638 aa21.51■■□□□ 1.03
CLN6-216ENST00000636876 NBPF4Q96M43 638 aa21.51■■□□□ 1.03
CLN6-216ENST00000636876 RGPD2P0DJD1 1756 aa21.51■■□□□ 1.03
CLN6-216ENST00000636876 RBM6P78332 1123 aaKnown RBP21.5■■□□□ 1.03
CLN6-216ENST00000636876 USP35Q9P2H5 1018 aa21.5■■□□□ 1.03
CLN6-216ENST00000636876 TCP11L2Q8N4U5 519 aa21.49■■□□□ 1.03
CLN6-216ENST00000636876 EYA1Q99502 592 aa21.49■■□□□ 1.03
CLN6-216ENST00000636876 NCAPD2Q15021 1401 aa21.48■■□□□ 1.03
CLN6-216ENST00000636876 THRAP3Q9Y2W1 955 aaKnown RBP21.48■■□□□ 1.03
CLN6-216ENST00000636876 USHBP1Q8N6Y0 703 aa21.47■■□□□ 1.03
CLN6-216ENST00000636876 IGSF1Q8N6C5 1336 aa21.47■■□□□ 1.03
CLN6-216ENST00000636876 RGPD1P0DJD0 1748 aa21.46■■□□□ 1.03
CLN6-216ENST00000636876 BARGINQ6ZT62 677 aa21.46■■□□□ 1.03
CLN6-216ENST00000636876 FAM98CQ17RN3 349 aaKnown RBP21.45■■□□□ 1.02
CLN6-216ENST00000636876 NUDCQ9Y266 331 aa21.45■■□□□ 1.02
CLN6-216ENST00000636876 ONECUT3O60422 494 aaPredicted RBP21.43■■□□□ 1.02
CLN6-216ENST00000636876 DISP2A7MBM2 1401 aa21.43■■□□□ 1.02
CLN6-216ENST00000636876 WNK3Q9BYP7 1800 aa21.43■■□□□ 1.02
CLN6-216ENST00000636876 U2SURPO15042 1029 aaKnown RBP21.42■■□□□ 1.02
CLN6-216ENST00000636876 THSD7AQ9UPZ6 1657 aa21.41■■□□□ 1.02
CLN6-216ENST00000636876 CDCA7Q9BWT1 371 aaPredicted RBP21.41■■□□□ 1.02
CLN6-216ENST00000636876 KDRP35968 1356 aa21.4■■□□□ 1.02
CLN6-216ENST00000636876 IL2RBP14784 551 aa21.4■■□□□ 1.02
CLN6-216ENST00000636876 CCDC184Q52MB2 194 aa21.4■■□□□ 1.02
CLN6-216ENST00000636876 SULT6B1Q6IMI4 303 aa21.4■■□□□ 1.02
CLN6-216ENST00000636876 AEBP1Q8IUX7 1158 aa21.4■■□□□ 1.02
CLN6-216ENST00000636876 BRWD3Q6RI45 1802 aa21.39■■□□□ 1.02
CLN6-216ENST00000636876 RAPGEF4Q8WZA2 1011 aa21.39■■□□□ 1.01
CLN6-216ENST00000636876 MEGF6O75095 1541 aa21.39■■□□□ 1.01
CLN6-216ENST00000636876 A0A0G2JS52 829 aa21.38■■□□□ 1.01
CLN6-216ENST00000636876 U2AF1L5P0DN76 240 aaPredicted RBP21.38■■□□□ 1.01
CLN6-216ENST00000636876 U2AF1Q01081 240 aaKnown RBP eCLIP21.38■■□□□ 1.01
CLN6-216ENST00000636876 MYT1Q01538 1121 aa21.38■■□□□ 1.01
CLN6-216ENST00000636876 SEPT12Q8IYM1 358 aa21.38■■□□□ 1.01
CLN6-216ENST00000636876 MRS2Q9HD23 443 aa21.38■■□□□ 1.01
CLN6-216ENST00000636876 EP400Q96L91 3159 aa21.38■■□□□ 1.01
CLN6-216ENST00000636876 PARP4Q9UKK3 1724 aaKnown RBP21.38■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms