RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 LTV1Q96GA3 475 aaPredicted RBP26.57■■□□□ 1.84
CLN3-250ENST00000636839 SLIT3O75094 1523 aa26.56■■□□□ 1.84
CLN3-250ENST00000636839 ZNF521Q96K83 1311 aa26.56■■□□□ 1.84
CLN3-250ENST00000636839 FCHSD2O94868 740 aa26.56■■□□□ 1.84
CLN3-250ENST00000636839 ZC3H6P61129 1189 aaKnown RBP26.56■■□□□ 1.84
CLN3-250ENST00000636839 PHACTR3Q96KR7 559 aa26.56■■□□□ 1.84
CLN3-250ENST00000636839 IQSEC2Q5JU85 1478 aa26.55■■□□□ 1.84
CLN3-250ENST00000636839 ARHGEF25Q86VW2 580 aa26.55■■□□□ 1.84
CLN3-250ENST00000636839 SULT6B1Q6IMI4 303 aa26.54■■□□□ 1.84
CLN3-250ENST00000636839 LTN1O94822 1766 aa26.53■■□□□ 1.84
CLN3-250ENST00000636839 IP6K1Q92551 441 aa26.53■■□□□ 1.84
CLN3-250ENST00000636839 SPINK5Q9NQ38 1064 aaPredicted RBP26.51■■□□□ 1.83
CLN3-250ENST00000636839 GTF3C3Q9Y5Q9 886 aa26.51■■□□□ 1.83
CLN3-250ENST00000636839 WWC1Q8IX03 1113 aa26.51■■□□□ 1.83
CLN3-250ENST00000636839 EYA1Q99502 592 aa26.51■■□□□ 1.83
CLN3-250ENST00000636839 AXIN2Q9Y2T1 843 aa26.5■■□□□ 1.83
CLN3-250ENST00000636839 MAPK8IP3Q9UPT6 1336 aa26.5■■□□□ 1.83
CLN3-250ENST00000636839 TMPOP42166 694 aaKnown RBP26.49■■□□□ 1.83
CLN3-250ENST00000636839 KIF24Q5T7B8 1368 aa26.49■■□□□ 1.83
CLN3-250ENST00000636839 ARHGEF10O15013 1369 aa26.48■■□□□ 1.83
CLN3-250ENST00000636839 ROBO1Q9Y6N7 1651 aa26.48■■□□□ 1.83
CLN3-250ENST00000636839 PDE3BQ13370 1112 aa26.48■■□□□ 1.83
CLN3-250ENST00000636839 RTL1A6NKG5 1358 aa26.47■■□□□ 1.83
CLN3-250ENST00000636839 NHSL1Q5SYE7 1610 aa26.46■■□□□ 1.83
CLN3-250ENST00000636839 PIP4K2BP78356 416 aa26.46■■□□□ 1.83
CLN3-250ENST00000636839 PHF23Q9BUL5 403 aaPredicted RBP26.46■■□□□ 1.83
CLN3-250ENST00000636839 RGPD1P0DJD0 1748 aa26.46■■□□□ 1.83
CLN3-250ENST00000636839 GOLGA2Q08379 1002 aa26.46■■□□□ 1.83
CLN3-250ENST00000636839 PNNQ9H307 717 aaKnown RBP26.46■■□□□ 1.83
CLN3-250ENST00000636839 SUPT16HQ9Y5B9 1047 aaKnown RBP26.46■■□□□ 1.83
CLN3-250ENST00000636839 USHBP1Q8N6Y0 703 aa26.45■■□□□ 1.82
CLN3-250ENST00000636839 RIPK4P57078 832 aa26.44■■□□□ 1.82
CLN3-250ENST00000636839 CHRNA2Q15822 529 aa26.44■■□□□ 1.82
CLN3-250ENST00000636839 TRIM35Q9UPQ4 493 aa26.44■■□□□ 1.82
CLN3-250ENST00000636839 IGSF1Q8N6C5 1336 aa26.44■■□□□ 1.82
CLN3-250ENST00000636839 LRRC59Q96AG4 307 aaKnown RBP26.43■■□□□ 1.82
CLN3-250ENST00000636839 PHRF1Q9P1Y6 1649 aaKnown RBP26.43■■□□□ 1.82
CLN3-250ENST00000636839 NBPF6Q5VWK0 638 aa26.42■■□□□ 1.82
CLN3-250ENST00000636839 NBPF4Q96M43 638 aa26.42■■□□□ 1.82
CLN3-250ENST00000636839 SLFN5Q08AF3 891 aa26.41■■□□□ 1.82
CLN3-250ENST00000636839 NGEFQ8N5V2 710 aa26.41■■□□□ 1.82
CLN3-250ENST00000636839 CRYBG1Q9Y4K1 1723 aa26.41■■□□□ 1.82
CLN3-250ENST00000636839 KIAA0232Q92628 1395 aa26.41■■□□□ 1.82
CLN3-250ENST00000636839 CCDC27Q2M243 656 aa26.4■■□□□ 1.82
CLN3-250ENST00000636839 DUSP27Q5VZP5 1158 aa26.4■■□□□ 1.82
CLN3-250ENST00000636839 TOM1O60784 492 aa26.39■■□□□ 1.82
CLN3-250ENST00000636839 ANKRD24Q8TF21 1146 aa26.39■■□□□ 1.82
CLN3-250ENST00000636839 UBAP1LF5GYI3 381 aa26.39■■□□□ 1.81
CLN3-250ENST00000636839 NEFMP07197 916 aa26.39■■□□□ 1.81
CLN3-250ENST00000636839 NFE2L2Q16236 605 aa26.39■■□□□ 1.81
CLN3-250ENST00000636839 KDRP35968 1356 aa26.37■■□□□ 1.81
CLN3-250ENST00000636839 RGPD5Q99666 1765 aa26.36■■□□□ 1.81
CLN3-250ENST00000636839 TRMT2AQ8IZ69 625 aaKnown RBP26.36■■□□□ 1.81
CLN3-250ENST00000636839 THUMPD2Q9BTF0 503 aaKnown RBP26.36■■□□□ 1.81
CLN3-250ENST00000636839 HAP1P54257 671 aaPredicted RBP26.36■■□□□ 1.81
CLN3-250ENST00000636839 RGPD2P0DJD1 1756 aa26.34■■□□□ 1.81
CLN3-250ENST00000636839 FAM83GA6ND36 823 aa26.34■■□□□ 1.81
CLN3-250ENST00000636839 WDR63Q8IWG1 891 aa26.34■■□□□ 1.81
CLN3-250ENST00000636839 AHDC1Q5TGY3 1603 aaPredicted RBP26.34■■□□□ 1.81
CLN3-250ENST00000636839 E9PSI1 815 aa26.33■■□□□ 1.81
CLN3-250ENST00000636839 NCBP3Q53F19 620 aaKnown RBP26.33■■□□□ 1.81
CLN3-250ENST00000636839 MTHFSDQ2M296 383 aaKnown RBP26.32■■□□□ 1.8
CLN3-250ENST00000636839 COL18A1P39060 1754 aa26.32■■□□□ 1.8
CLN3-250ENST00000636839 CPDO75976 1380 aa26.32■■□□□ 1.8
CLN3-250ENST00000636839 ERBB3P21860 1342 aa26.32■■□□□ 1.8
CLN3-250ENST00000636839 DCTN1Q14203 1278 aa26.32■■□□□ 1.8
CLN3-250ENST00000636839 PRDM11Q9NQV5 511 aa26.32■■□□□ 1.8
CLN3-250ENST00000636839 IRX6P78412 446 aaPredicted RBP26.31■■□□□ 1.8
CLN3-250ENST00000636839 CERKQ8TCT0 537 aa26.3■■□□□ 1.8
CLN3-250ENST00000636839 RCAN3Q9UKA8 241 aa26.28■■□□□ 1.8
CLN3-250ENST00000636839 ABCA3Q99758 1704 aa26.28■■□□□ 1.8
CLN3-250ENST00000636839 TSR2Q969E8 191 aaKnown RBP26.27■■□□□ 1.8
CLN3-250ENST00000636839 DLG5Q8TDM6 1919 aa26.26■■□□□ 1.8
CLN3-250ENST00000636839 NLRP2Q9NX02 1062 aa26.26■■□□□ 1.79
CLN3-250ENST00000636839 FKBP8Q14318 412 aa26.26■■□□□ 1.79
CLN3-250ENST00000636839 PHLPP1O60346 1717 aa26.25■■□□□ 1.79
CLN3-250ENST00000636839 CSB-PGBD3P0DP91 1061 aa26.25■■□□□ 1.79
CLN3-250ENST00000636839 MCM10Q7L590 875 aa26.25■■□□□ 1.79
CLN3-250ENST00000636839 CAMTA1Q9Y6Y1 1673 aa26.24■■□□□ 1.79
CLN3-250ENST00000636839 COL16A1Q07092 1604 aaPredicted RBP26.24■■□□□ 1.79
CLN3-250ENST00000636839 LAS1LQ9Y4W2 734 aaKnown RBP26.23■■□□□ 1.79
CLN3-250ENST00000636839 FANCIQ9NVI1 1328 aa26.2■■□□□ 1.79
CLN3-250ENST00000636839 NCAPD2Q15021 1401 aa26.2■■□□□ 1.78
CLN3-250ENST00000636839 MYH16Q9H6N6 1097 aa26.19■■□□□ 1.78
CLN3-250ENST00000636839 GAS2L2Q8NHY3 880 aa26.19■■□□□ 1.78
CLN3-250ENST00000636839 LMOD3Q0VAK6 560 aa26.18■■□□□ 1.78
CLN3-250ENST00000636839 STRN4Q9NRL3 753 aa26.18■■□□□ 1.78
CLN3-250ENST00000636839 IL16Q14005 1332 aa26.18■■□□□ 1.78
CLN3-250ENST00000636839 RNF123Q5XPI4 1314 aa26.18■■□□□ 1.78
CLN3-250ENST00000636839 LMO7Q8WWI1 1683 aa26.17■■□□□ 1.78
CLN3-250ENST00000636839 NEFLP07196 543 aa26.17■■□□□ 1.78
CLN3-250ENST00000636839 ABCC6O95255 1503 aa26.16■■□□□ 1.78
CLN3-250ENST00000636839 NUTM2BA6NNL0 878 aaPredicted RBP26.16■■□□□ 1.78
CLN3-250ENST00000636839 NUTM2EB1AL46 878 aaPredicted RBP26.16■■□□□ 1.78
CLN3-250ENST00000636839 ADAMTS2O95450 1211 aa26.16■■□□□ 1.78
CLN3-250ENST00000636839 NUTM2AQ8IVF1 878 aaPredicted RBP26.16■■□□□ 1.78
CLN3-250ENST00000636839 COL5A2P05997 1499 aaPredicted RBP26.16■■□□□ 1.78
CLN3-250ENST00000636839 COL22A1Q8NFW1 1626 aaPredicted RBP26.15■■□□□ 1.78
CLN3-250ENST00000636839 PLIN1O60240 522 aa26.15■■□□□ 1.78
CLN3-250ENST00000636839 EXOSC9Q06265 439 aaKnown RBP26.15■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 76.3 ms