RNA–Protein interactions for RNA: ENST00000625244.2

SNX1-214, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 324 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-214ENST00000625244 GCP02774 474 aa20.69■□□□□ 0.9
SNX1-214ENST00000625244 POLR3AO14802 1390 aaPredicted RBP20.69■□□□□ 0.9
SNX1-214ENST00000625244 BCL9O00512 1426 aa20.67■□□□□ 0.9
SNX1-214ENST00000625244 ITSN1Q15811 1721 aa20.67■□□□□ 0.9
SNX1-214ENST00000625244 SHANK3Q9BYB0 1731 aa20.65■□□□□ 0.9
SNX1-214ENST00000625244 ZBTB7CA1YPR0 619 aa20.65■□□□□ 0.9
SNX1-214ENST00000625244 TOM1L2Q6ZVM7 507 aa20.64■□□□□ 0.89
SNX1-214ENST00000625244 CDK19Q9BWU1 502 aa20.64■□□□□ 0.89
SNX1-214ENST00000625244 AATKQ6ZMQ8 1374 aa20.63■□□□□ 0.89
SNX1-214ENST00000625244 NLRP13Q86W25 1043 aa20.63■□□□□ 0.89
SNX1-214ENST00000625244 PELP1Q8IZL8 1130 aaKnown RBP20.63■□□□□ 0.89
SNX1-214ENST00000625244 PLEKHG3A1L390 1219 aa20.62■□□□□ 0.89
SNX1-214ENST00000625244 CCDC61Q9Y6R9 512 aa20.62■□□□□ 0.89
SNX1-214ENST00000625244 KLHL34Q8N239 644 aa20.6■□□□□ 0.89
SNX1-214ENST00000625244 TOPAZ1Q8N9V7 1692 aa20.58■□□□□ 0.89
SNX1-214ENST00000625244 ZNF827Q17R98 1081 aa20.58■□□□□ 0.89
SNX1-214ENST00000625244 CDCA7Q9BWT1 371 aaPredicted RBP20.58■□□□□ 0.89
SNX1-214ENST00000625244 AXIN2Q9Y2T1 843 aa20.58■□□□□ 0.89
SNX1-214ENST00000625244 KDM2AQ9Y2K7 1162 aa20.57■□□□□ 0.88
SNX1-214ENST00000625244 WDR17Q8IZU2 1322 aa20.56■□□□□ 0.88
SNX1-214ENST00000625244 NLGN2Q8NFZ4 835 aa20.56■□□□□ 0.88
SNX1-214ENST00000625244 AKAP12Q02952 1782 aa20.56■□□□□ 0.88
SNX1-214ENST00000625244 PAPPAQ13219 1627 aa20.55■□□□□ 0.88
SNX1-214ENST00000625244 HSPA6P17066 643 aa20.54■□□□□ 0.88
SNX1-214ENST00000625244 WNK3Q9BYP7 1800 aa20.54■□□□□ 0.88
SNX1-214ENST00000625244 ARHGEF28Q8N1W1 1705 aaKnown RBP20.53■□□□□ 0.88
SNX1-214ENST00000625244 EXOC5O00471 708 aa20.53■□□□□ 0.88
SNX1-214ENST00000625244 YBX3P16989 372 aaKnown RBP eCLIP20.52■□□□□ 0.88
SNX1-214ENST00000625244 NLRP6P59044 892 aa20.52■□□□□ 0.88
SNX1-214ENST00000625244 ACSBG1Q96GR2 724 aa20.52■□□□□ 0.88
SNX1-214ENST00000625244 ATP10DQ9P241 1426 aa20.52■□□□□ 0.87
SNX1-214ENST00000625244 POLD1P28340 1107 aa20.51■□□□□ 0.87
SNX1-214ENST00000625244 DCAF11Q8TEB1 546 aa20.51■□□□□ 0.87
SNX1-214ENST00000625244 CARD10Q9BWT7 1032 aa20.51■□□□□ 0.87
SNX1-214ENST00000625244 LRRC4BQ9NT99 713 aa20.51■□□□□ 0.87
SNX1-214ENST00000625244 COL18A1P39060 1754 aa20.51■□□□□ 0.87
SNX1-214ENST00000625244 SLIT3O75094 1523 aa20.49■□□□□ 0.87
SNX1-214ENST00000625244 GRIN3BO60391 1043 aa20.49■□□□□ 0.87
SNX1-214ENST00000625244 PPIP5K1Q6PFW1 1433 aa20.48■□□□□ 0.87
SNX1-214ENST00000625244 SLC16A10Q8TF71 515 aa20.48■□□□□ 0.87
SNX1-214ENST00000625244 CSB-PGBD3P0DP91 1061 aa20.47■□□□□ 0.87
SNX1-214ENST00000625244 AKT1S1Q96B36 256 aa20.47■□□□□ 0.87
SNX1-214ENST00000625244 GPBP1L1Q9HC44 474 aaPredicted RBP20.47■□□□□ 0.87
SNX1-214ENST00000625244 NHSQ6T4R5 1651 aa20.47■□□□□ 0.87
SNX1-214ENST00000625244 USP6P35125 1406 aa20.45■□□□□ 0.86
SNX1-214ENST00000625244 TNS2Q63HR2 1409 aa20.45■□□□□ 0.86
SNX1-214ENST00000625244 ARHGEF25Q86VW2 580 aa20.45■□□□□ 0.86
SNX1-214ENST00000625244 PNPLA7Q6ZV29 1317 aa20.45■□□□□ 0.86
SNX1-214ENST00000625244 BRD4O60885 1362 aaPredicted RBP20.45■□□□□ 0.86
SNX1-214ENST00000625244 CPSF1Q10570 1443 aaKnown RBP20.44■□□□□ 0.86
SNX1-214ENST00000625244 ZNF526Q8TF50 670 aaPredicted RBP20.43■□□□□ 0.86
SNX1-214ENST00000625244 CABP2Q9NPB3 220 aa20.43■□□□□ 0.86
SNX1-214ENST00000625244 COL24A1Q17RW2 1714 aa20.43■□□□□ 0.86
SNX1-214ENST00000625244 SRPK2P78362 688 aaKnown RBP20.42■□□□□ 0.86
SNX1-214ENST00000625244 CCDC7Q96M83 1385 aa20.41■□□□□ 0.86
SNX1-214ENST00000625244 BTAF1O14981 1849 aa20.4■□□□□ 0.86
SNX1-214ENST00000625244 SOX12O15370 315 aa20.4■□□□□ 0.86
SNX1-214ENST00000625244 CABP1Q9NZU7 370 aa20.4■□□□□ 0.86
SNX1-214ENST00000625244 RGPD5Q99666 1765 aa20.39■□□□□ 0.86
SNX1-214ENST00000625244 ADCY9O60503 1353 aa20.39■□□□□ 0.85
SNX1-214ENST00000625244 STAC3Q96MF2 364 aa20.39■□□□□ 0.85
SNX1-214ENST00000625244 TFCP2L1Q9NZI6 479 aa20.39■□□□□ 0.85
SNX1-214ENST00000625244 TRPM1Q7Z4N2 1603 aa20.38■□□□□ 0.85
SNX1-214ENST00000625244 PIK3C2AO00443 1686 aa20.38■□□□□ 0.85
SNX1-214ENST00000625244 PCNTO95613 3336 aa20.38■□□□□ 0.85
SNX1-214ENST00000625244 ABCC6O95255 1503 aa20.37■□□□□ 0.85
SNX1-214ENST00000625244 KCNQ4P56696 695 aa20.37■□□□□ 0.85
SNX1-214ENST00000625244 QSER1Q2KHR3 1735 aa20.36■□□□□ 0.85
SNX1-214ENST00000625244 SLC27A3Q5K4L6 730 aa20.36■□□□□ 0.85
SNX1-214ENST00000625244 KCNH5Q8NCM2 988 aa20.35■□□□□ 0.85
SNX1-214ENST00000625244 KAT6BQ8WYB5 2073 aa20.33■□□□□ 0.85
SNX1-214ENST00000625244 TUBGCP6Q96RT7 1819 aa20.32■□□□□ 0.84
SNX1-214ENST00000625244 KIF3CO14782 793 aa20.32■□□□□ 0.84
SNX1-214ENST00000625244 DNAJC5GQ8N7S2 189 aa20.32■□□□□ 0.84
SNX1-214ENST00000625244 IL2RBP14784 551 aa20.31■□□□□ 0.84
SNX1-214ENST00000625244 APLP1P51693 650 aa20.3■□□□□ 0.84
SNX1-214ENST00000625244 NBPF1Q3BBV0 1214 aa20.3■□□□□ 0.84
SNX1-214ENST00000625244 NLRP2Q9NX02 1062 aa20.3■□□□□ 0.84
SNX1-214ENST00000625244 TTC21BQ7Z4L5 1316 aa20.29■□□□□ 0.84
SNX1-214ENST00000625244 NFAT5O94916 1531 aa20.29■□□□□ 0.84
SNX1-214ENST00000625244 MSL1Q68DK7 614 aa20.29■□□□□ 0.84
SNX1-214ENST00000625244 CENPJQ9HC77 1338 aaPredicted RBP20.28■□□□□ 0.84
SNX1-214ENST00000625244 MSH5O43196 834 aa20.28■□□□□ 0.84
SNX1-214ENST00000625244 COL23A1Q86Y22 540 aaPredicted RBP20.28■□□□□ 0.84
SNX1-214ENST00000625244 ERBB3P21860 1342 aa20.27■□□□□ 0.84
SNX1-214ENST00000625244 CAPN15O75808 1086 aa20.27■□□□□ 0.84
SNX1-214ENST00000625244 COL13A1Q5TAT6 717 aaPredicted RBP20.27■□□□□ 0.84
SNX1-214ENST00000625244 CD2APQ9Y5K6 639 aa20.26■□□□□ 0.83
SNX1-214ENST00000625244 QRICH2Q9H0J4 1663 aa20.26■□□□□ 0.83
SNX1-214ENST00000625244 PRIM1P49642 420 aaKnown RBP20.23■□□□□ 0.83
SNX1-214ENST00000625244 DDX54Q8TDD1 881 aaKnown RBP20.23■□□□□ 0.83
SNX1-214ENST00000625244 SYTL4Q96C24 671 aaPredicted RBP20.23■□□□□ 0.83
SNX1-214ENST00000625244 WWC3Q9ULE0 1092 aa20.22■□□□□ 0.83
SNX1-214ENST00000625244 ANKRD24Q8TF21 1146 aa20.21■□□□□ 0.83
SNX1-214ENST00000625244 ZNF692Q9BU19 519 aaPredicted RBP20.21■□□□□ 0.83
SNX1-214ENST00000625244 CCNL1Q9UK58 526 aaPredicted RBP20.21■□□□□ 0.83
SNX1-214ENST00000625244 TTC21AQ8NDW8 1320 aa20.21■□□□□ 0.83
SNX1-214ENST00000625244 RAB3GAP2Q9H2M9 1393 aa20.21■□□□□ 0.83
SNX1-214ENST00000625244 NSD2O96028 1365 aa20.2■□□□□ 0.82
SNX1-214ENST00000625244 KIAA1210Q9ULL0 1709 aa20.19■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms