RNA–Protein interactions for RNA: ENST00000621266.4

COL4A6-210, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,627 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-210ENST00000621266 SHTN1A0MZ66 631 aa11.74□□□□□ -0.53
COL4A6-210ENST00000621266 GTF2F1P35269 517 aaKnown RBP eCLIP11.74□□□□□ -0.53
COL4A6-210ENST00000621266 SPDYE4A6NLX3 237 aa11.74□□□□□ -0.53
COL4A6-210ENST00000621266 HMOX1P09601 288 aa11.74□□□□□ -0.53
COL4A6-210ENST00000621266 TMCO3Q6UWJ1 677 aa11.74□□□□□ -0.53
COL4A6-210ENST00000621266 TNMDQ9H2S6 317 aa11.73□□□□□ -0.53
COL4A6-210ENST00000621266 TOPBP1Q92547 1522 aa11.73□□□□□ -0.53
COL4A6-210ENST00000621266 MIA2Q96PC5 1412 aa11.73□□□□□ -0.53
COL4A6-210ENST00000621266 SCAPERQ9BY12 1400 aa11.73□□□□□ -0.53
COL4A6-210ENST00000621266 ATP2B1P20020 1258 aa11.73□□□□□ -0.53
COL4A6-210ENST00000621266 PPFIBP1Q86W92 1011 aa11.73□□□□□ -0.53
COL4A6-210ENST00000621266 NEK4P51957 841 aa11.73□□□□□ -0.53
COL4A6-210ENST00000621266 EFCAB5A4FU69 1503 aa11.73□□□□□ -0.53
COL4A6-210ENST00000621266 ARAP1Q96P48 1450 aa11.73□□□□□ -0.53
COL4A6-210ENST00000621266 AMOTL1Q8IY63 956 aa11.73□□□□□ -0.53
COL4A6-210ENST00000621266 ZSCAN30Q86W11 494 aa11.72□□□□□ -0.53
COL4A6-210ENST00000621266 NF2P35240 595 aa11.72□□□□□ -0.53
COL4A6-210ENST00000621266 RNF187Q5TA31 235 aaPredicted RBP11.72□□□□□ -0.53
COL4A6-210ENST00000621266 CEBPAP49715 358 aaPredicted RBP11.72□□□□□ -0.53
COL4A6-210ENST00000621266 PPP4R3BQ5MIZ7 849 aa11.72□□□□□ -0.53
COL4A6-210ENST00000621266 UBXN4Q92575 508 aa11.72□□□□□ -0.53
COL4A6-210ENST00000621266 GTF2A1P52655 376 aaPredicted RBP11.72□□□□□ -0.53
COL4A6-210ENST00000621266 ZNHIT6Q9NWK9 470 aaKnown RBP11.71□□□□□ -0.53
COL4A6-210ENST00000621266 FYB1O15117 783 aa11.71□□□□□ -0.53
COL4A6-210ENST00000621266 CFAP45Q9UL16 551 aa11.71□□□□□ -0.53
COL4A6-210ENST00000621266 RABEP1Q15276 862 aa11.71□□□□□ -0.54
COL4A6-210ENST00000621266 CCDC7Q96M83 1385 aa11.71□□□□□ -0.54
COL4A6-210ENST00000621266 POLA1P09884 1462 aaPredicted RBP11.71□□□□□ -0.54
COL4A6-210ENST00000621266 KIF7Q2M1P5 1343 aa11.7□□□□□ -0.54
COL4A6-210ENST00000621266 ANKRD18AQ8IVF6 992 aa11.7□□□□□ -0.54
COL4A6-210ENST00000621266 MTMR7Q9Y216 660 aa11.7□□□□□ -0.54
COL4A6-210ENST00000621266 MAP2K1Q02750 393 aaPredicted RBP11.7□□□□□ -0.54
COL4A6-210ENST00000621266 G3BP1Q13283 466 aaKnown RBP eCLIP11.7□□□□□ -0.54
COL4A6-210ENST00000621266 FILIP1Q7Z7B0 1213 aa11.7□□□□□ -0.54
COL4A6-210ENST00000621266 RALYLQ86SE5 291 aaKnown RBP11.7□□□□□ -0.54
COL4A6-210ENST00000621266 RRBP1Q9P2E9 1410 aaKnown RBP11.7□□□□□ -0.54
COL4A6-210ENST00000621266 RIPK4P57078 832 aa11.7□□□□□ -0.54
COL4A6-210ENST00000621266 BRMS1Q9HCU9 246 aa11.7□□□□□ -0.54
COL4A6-210ENST00000621266 DDX11Q96FC9 970 aa11.7□□□□□ -0.54
COL4A6-210ENST00000621266 PLEKHH2Q8IVE3 1493 aa11.69□□□□□ -0.54
COL4A6-210ENST00000621266 KRI1Q8N9T8 703 aaKnown RBP11.69□□□□□ -0.54
COL4A6-210ENST00000621266 PRXQ9BXM0 1461 aa11.69□□□□□ -0.54
COL4A6-210ENST00000621266 EZRP15311 586 aaKnown RBP11.69□□□□□ -0.54
COL4A6-210ENST00000621266 PSMA5P28066 241 aa11.69□□□□□ -0.54
COL4A6-210ENST00000621266 TOP2BQ02880 1626 aa11.69□□□□□ -0.54
COL4A6-210ENST00000621266 RUNDC1Q96C34 613 aa11.69□□□□□ -0.54
COL4A6-210ENST00000621266 STK38Q15208 465 aa11.68□□□□□ -0.54
COL4A6-210ENST00000621266 SYCP1Q15431 976 aa11.68□□□□□ -0.54
COL4A6-210ENST00000621266 CRACR2AQ9BSW2 395 aa11.68□□□□□ -0.54
COL4A6-210ENST00000621266 API5Q9BZZ5 524 aaKnown RBP11.68□□□□□ -0.54
COL4A6-210ENST00000621266 ERC2O15083 957 aa11.68□□□□□ -0.54
COL4A6-210ENST00000621266 PRAM1Q96QH2 718 aa11.68□□□□□ -0.54
COL4A6-210ENST00000621266 IRX3P78415 501 aaPredicted RBP11.68□□□□□ -0.54
COL4A6-210ENST00000621266 GGNBP2Q9H3C7 697 aa11.68□□□□□ -0.54
COL4A6-210ENST00000621266 EHBP1L1Q8N3D4 1523 aa11.68□□□□□ -0.54
COL4A6-210ENST00000621266 ROCK1Q13464 1354 aa11.68□□□□□ -0.54
COL4A6-210ENST00000621266 WASHC4Q2M389 1173 aa11.68□□□□□ -0.54
COL4A6-210ENST00000621266 ZNF396Q96N95 335 aaPredicted RBP11.68□□□□□ -0.54
COL4A6-210ENST00000621266 MCM4P33991 863 aa11.67□□□□□ -0.54
COL4A6-210ENST00000621266 DNAJC2Q99543 621 aaKnown RBP11.67□□□□□ -0.54
COL4A6-210ENST00000621266 PDZRN3Q9UPQ7 1066 aa11.67□□□□□ -0.54
COL4A6-210ENST00000621266 TROQ12816 1431 aaPredicted RBP11.67□□□□□ -0.54
COL4A6-210ENST00000621266 PLCD3Q8N3E9 789 aa11.67□□□□□ -0.54
COL4A6-210ENST00000621266 SYCE3A1L190 88 aa11.67□□□□□ -0.54
COL4A6-210ENST00000621266 STK3Q13188 491 aa11.67□□□□□ -0.54
COL4A6-210ENST00000621266 CCDC113Q9H0I3 377 aa11.67□□□□□ -0.54
COL4A6-210ENST00000621266 FKBP5Q13451 457 aaPredicted RBP11.67□□□□□ -0.54
COL4A6-210ENST00000621266 IQCEQ6IPM2 695 aa11.67□□□□□ -0.54
COL4A6-210ENST00000621266 HFM1A2PYH4 1435 aa11.67□□□□□ -0.54
COL4A6-210ENST00000621266 GBP2P32456 591 aaPredicted RBP11.67□□□□□ -0.54
COL4A6-210ENST00000621266 TMX1Q9H3N1 280 aa11.66□□□□□ -0.54
COL4A6-210ENST00000621266 NINLQ9Y2I6 1382 aa11.66□□□□□ -0.54
COL4A6-210ENST00000621266 C9orf84Q5VXU9 1444 aa11.66□□□□□ -0.54
COL4A6-210ENST00000621266 K7ELQ4 463 aaPredicted RBP11.66□□□□□ -0.54
COL4A6-210ENST00000621266 SRRTQ9BXP5 876 aaKnown RBP11.66□□□□□ -0.54
COL4A6-210ENST00000621266 CBFA2T2O43439 604 aa11.66□□□□□ -0.54
COL4A6-210ENST00000621266 XBP1P17861 261 aa11.66□□□□□ -0.54
COL4A6-210ENST00000621266 PTPN14Q15678 1187 aa11.66□□□□□ -0.54
COL4A6-210ENST00000621266 CFAP70Q5T0N1 1121 aa11.66□□□□□ -0.54
COL4A6-210ENST00000621266 RIC3Q7Z5B4 369 aa11.66□□□□□ -0.54
COL4A6-210ENST00000621266 TIGD1Q96MW7 591 aa11.66□□□□□ -0.54
COL4A6-210ENST00000621266 TANGO6Q9C0B7 1094 aa11.66□□□□□ -0.54
COL4A6-210ENST00000621266 MNAT1P51948 309 aa11.65□□□□□ -0.54
COL4A6-210ENST00000621266 CNTROBQ8N137 903 aa11.65□□□□□ -0.54
COL4A6-210ENST00000621266 BACH2Q9BYV9 841 aa11.65□□□□□ -0.54
COL4A6-210ENST00000621266 ME1P48163 572 aa11.65□□□□□ -0.54
COL4A6-210ENST00000621266 BICDL1Q6ZP65 573 aa11.65□□□□□ -0.54
COL4A6-210ENST00000621266 DDX58O95786 925 aaKnown RBP11.65□□□□□ -0.54
COL4A6-210ENST00000621266 GNAI1P63096 354 aa11.65□□□□□ -0.54
COL4A6-210ENST00000621266 DHX8Q14562 1220 aaKnown RBP11.65□□□□□ -0.54
COL4A6-210ENST00000621266 NEUROD6Q96NK8 337 aa11.65□□□□□ -0.54
COL4A6-210ENST00000621266 CNTLNQ9NXG0 1405 aa11.65□□□□□ -0.54
COL4A6-210ENST00000621266 DNMBPQ6XZF7 1577 aa11.65□□□□□ -0.54
COL4A6-210ENST00000621266 CEP63Q96MT8 703 aa11.65□□□□□ -0.54
COL4A6-210ENST00000621266 TSPYL4Q9UJ04 414 aa11.65□□□□□ -0.54
COL4A6-210ENST00000621266 CASQ1P31415 396 aa11.65□□□□□ -0.55
COL4A6-210ENST00000621266 KIF6Q6ZMV9 814 aa11.65□□□□□ -0.55
COL4A6-210ENST00000621266 CDK5RAP3Q96JB5 506 aa11.65□□□□□ -0.55
COL4A6-210ENST00000621266 BCCIPQ9P287 314 aaKnown RBP eCLIP11.64□□□□□ -0.55
COL4A6-210ENST00000621266 LMAN1P49257 510 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 85.7 ms