RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 OVOS2A0A0G2JMS6 1433 aa16.87■□□□□ 0.29
UPF3B-204ENST00000619445 OVOS2A0A0J9YW53 1432 aa16.87■□□□□ 0.29
UPF3B-204ENST00000619445 OVOS2Q6IE36 1432 aa16.87■□□□□ 0.29
UPF3B-204ENST00000619445 HDGFL2Q7Z4V5 671 aaPredicted RBP16.87■□□□□ 0.29
UPF3B-204ENST00000619445 CAMKK2Q96RR4 588 aa16.87■□□□□ 0.29
UPF3B-204ENST00000619445 TERF2IPQ9NYB0 399 aa16.86■□□□□ 0.29
UPF3B-204ENST00000619445 USP31Q70CQ4 1352 aa16.85■□□□□ 0.29
UPF3B-204ENST00000619445 EZH2Q15910 746 aaKnown RBP16.85■□□□□ 0.29
UPF3B-204ENST00000619445 DDB1Q16531 1140 aa16.85■□□□□ 0.29
UPF3B-204ENST00000619445 USP54Q70EL1 1684 aa16.85■□□□□ 0.29
UPF3B-204ENST00000619445 NINLQ9Y2I6 1382 aa16.84■□□□□ 0.29
UPF3B-204ENST00000619445 PSDA5PKW4 1024 aaPredicted RBP16.84■□□□□ 0.29
UPF3B-204ENST00000619445 NBPF14Q5TI25 921 aa16.84■□□□□ 0.29
UPF3B-204ENST00000619445 CARD10Q9BWT7 1032 aa16.84■□□□□ 0.29
UPF3B-204ENST00000619445 NFAT5O94916 1531 aa16.83■□□□□ 0.28
UPF3B-204ENST00000619445 WNK3Q9BYP7 1800 aa16.83■□□□□ 0.28
UPF3B-204ENST00000619445 CSB-PGBD3P0DP91 1061 aa16.83■□□□□ 0.28
UPF3B-204ENST00000619445 TMC1Q8TDI8 760 aa16.83■□□□□ 0.28
UPF3B-204ENST00000619445 CCDC7Q96M83 1385 aa16.83■□□□□ 0.28
UPF3B-204ENST00000619445 EDC4Q6P2E9 1401 aaKnown RBP16.83■□□□□ 0.28
UPF3B-204ENST00000619445 LRRC37A3O60309 1634 aa16.82■□□□□ 0.28
UPF3B-204ENST00000619445 TRIM26Q12899 539 aaPredicted RBP16.82■□□□□ 0.28
UPF3B-204ENST00000619445 AXIN2Q9Y2T1 843 aa16.82■□□□□ 0.28
UPF3B-204ENST00000619445 RREB1Q92766 1687 aa16.82■□□□□ 0.28
UPF3B-204ENST00000619445 RGPD3A6NKT7 1758 aaPredicted RBP16.82■□□□□ 0.28
UPF3B-204ENST00000619445 RGPD4Q7Z3J3 1758 aa16.82■□□□□ 0.28
UPF3B-204ENST00000619445 BCL9O00512 1426 aa16.82■□□□□ 0.28
UPF3B-204ENST00000619445 R3HDM1Q15032 1099 aaKnown RBP16.81■□□□□ 0.28
UPF3B-204ENST00000619445 PEAK1Q9H792 1746 aa16.81■□□□□ 0.28
UPF3B-204ENST00000619445 RGPD5Q99666 1765 aa16.8■□□□□ 0.28
UPF3B-204ENST00000619445 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.8■□□□□ 0.28
UPF3B-204ENST00000619445 PLSCR1O15162 318 aa16.79■□□□□ 0.28
UPF3B-204ENST00000619445 SOX12O15370 315 aa16.79■□□□□ 0.28
UPF3B-204ENST00000619445 CD163L1Q9NR16 1453 aa16.79■□□□□ 0.28
UPF3B-204ENST00000619445 SBF2Q86WG5 1849 aa16.79■□□□□ 0.28
UPF3B-204ENST00000619445 NUP188Q5SRE5 1749 aa16.78■□□□□ 0.28
UPF3B-204ENST00000619445 EXOC5O00471 708 aa16.77■□□□□ 0.28
UPF3B-204ENST00000619445 BCL11BQ9C0K0 894 aaPredicted RBP16.77■□□□□ 0.28
UPF3B-204ENST00000619445 SLC12A5Q9H2X9 1139 aa16.77■□□□□ 0.28
UPF3B-204ENST00000619445 LTN1O94822 1766 aa16.77■□□□□ 0.27
UPF3B-204ENST00000619445 A0A1W2PP64 1363 aa16.76■□□□□ 0.27
UPF3B-204ENST00000619445 ERBB3P21860 1342 aa16.76■□□□□ 0.27
UPF3B-204ENST00000619445 NME9Q86XW9 330 aa16.76■□□□□ 0.27
UPF3B-204ENST00000619445 TNS2Q63HR2 1409 aa16.74■□□□□ 0.27
UPF3B-204ENST00000619445 ST20-MTHFSA0A0A6YYL1 179 aa16.74■□□□□ 0.27
UPF3B-204ENST00000619445 MARCH10Q8NA82 808 aaPredicted RBP16.74■□□□□ 0.27
UPF3B-204ENST00000619445 TESK2Q96S53 571 aa16.74■□□□□ 0.27
UPF3B-204ENST00000619445 NLRP2Q9NX02 1062 aa16.73■□□□□ 0.27
UPF3B-204ENST00000619445 FAM208AQ9UK61 1670 aaKnown RBP16.72■□□□□ 0.27
UPF3B-204ENST00000619445 CDCA8Q53HL2 280 aa16.72■□□□□ 0.27
UPF3B-204ENST00000619445 TIMELESSQ9UNS1 1208 aa16.72■□□□□ 0.27
UPF3B-204ENST00000619445 IL2RBP14784 551 aa16.71■□□□□ 0.27
UPF3B-204ENST00000619445 TMF1P82094 1093 aa16.71■□□□□ 0.27
UPF3B-204ENST00000619445 COG3Q96JB2 828 aa16.71■□□□□ 0.27
UPF3B-204ENST00000619445 ANKRD24Q8TF21 1146 aa16.7■□□□□ 0.26
UPF3B-204ENST00000619445 ANKRD36BQ8N2N9 1353 aa16.7■□□□□ 0.26
UPF3B-204ENST00000619445 IP6K1Q92551 441 aa16.69■□□□□ 0.26
UPF3B-204ENST00000619445 SPON1Q9HCB6 807 aa16.69■□□□□ 0.26
UPF3B-204ENST00000619445 CLSPNQ9HAW4 1339 aa16.69■□□□□ 0.26
UPF3B-204ENST00000619445 USP47Q96K76 1375 aa16.68■□□□□ 0.26
UPF3B-204ENST00000619445 KAT6BQ8WYB5 2073 aa16.67■□□□□ 0.26
UPF3B-204ENST00000619445 NHSQ6T4R5 1651 aa16.66■□□□□ 0.26
UPF3B-204ENST00000619445 KCNQ2O43526 872 aa16.65■□□□□ 0.26
UPF3B-204ENST00000619445 RTL1A6NKG5 1358 aa16.65■□□□□ 0.26
UPF3B-204ENST00000619445 PPP1R1BQ9UD71 204 aaPredicted RBP16.64■□□□□ 0.26
UPF3B-204ENST00000619445 AMPHP49418 695 aa16.64■□□□□ 0.25
UPF3B-204ENST00000619445 TXNRD1Q16881 649 aa16.64■□□□□ 0.25
UPF3B-204ENST00000619445 STK32BQ9NY57 414 aa16.64■□□□□ 0.25
UPF3B-204ENST00000619445 MAP3K19Q56UN5 1328 aa16.62■□□□□ 0.25
UPF3B-204ENST00000619445 DCAF8L1A6NGE4 600 aa16.62■□□□□ 0.25
UPF3B-204ENST00000619445 PROM2Q8N271 834 aa16.62■□□□□ 0.25
UPF3B-204ENST00000619445 SMG6Q86US8 1419 aaKnown RBP16.61■□□□□ 0.25
UPF3B-204ENST00000619445 HOXC9P31274 260 aa16.61■□□□□ 0.25
UPF3B-204ENST00000619445 PTF1AQ7RTS3 328 aa16.61■□□□□ 0.25
UPF3B-204ENST00000619445 KIF24Q5T7B8 1368 aa16.6■□□□□ 0.25
UPF3B-204ENST00000619445 CASZ1Q86V15 1759 aa16.6■□□□□ 0.25
UPF3B-204ENST00000619445 ANO8Q9HCE9 1232 aaPredicted RBP16.6■□□□□ 0.25
UPF3B-204ENST00000619445 CGNL1Q0VF96 1302 aa16.6■□□□□ 0.25
UPF3B-204ENST00000619445 BTAF1O14981 1849 aa16.59■□□□□ 0.25
UPF3B-204ENST00000619445 FYB1O15117 783 aa16.59■□□□□ 0.25
UPF3B-204ENST00000619445 SLC15A2Q16348 729 aa16.59■□□□□ 0.25
UPF3B-204ENST00000619445 LTV1Q96GA3 475 aaPredicted RBP16.59■□□□□ 0.25
UPF3B-204ENST00000619445 ACSBG1Q96GR2 724 aa16.58■□□□□ 0.24
UPF3B-204ENST00000619445 KIF20BQ96Q89 1820 aa16.58■□□□□ 0.24
UPF3B-204ENST00000619445 HMGB2P26583 209 aaKnown RBP16.57■□□□□ 0.24
UPF3B-204ENST00000619445 SLC27A3Q5K4L6 730 aa16.56■□□□□ 0.24
UPF3B-204ENST00000619445 ZCRB1Q8TBF4 217 aaKnown RBP16.55■□□□□ 0.24
UPF3B-204ENST00000619445 DDX54Q8TDD1 881 aaKnown RBP16.55■□□□□ 0.24
UPF3B-204ENST00000619445 GGNBP2Q9H3C7 697 aa16.55■□□□□ 0.24
UPF3B-204ENST00000619445 INSRP06213 1382 aa16.54■□□□□ 0.24
UPF3B-204ENST00000619445 FLT4P35916 1363 aa16.54■□□□□ 0.24
UPF3B-204ENST00000619445 RAPGEF4Q8WZA2 1011 aa16.54■□□□□ 0.24
UPF3B-204ENST00000619445 MTFR1LQ9H019 292 aa16.54■□□□□ 0.24
UPF3B-204ENST00000619445 RRS1Q15050 365 aaKnown RBP16.52■□□□□ 0.24
UPF3B-204ENST00000619445 PAPPAQ13219 1627 aa16.52■□□□□ 0.24
UPF3B-204ENST00000619445 RGPD2P0DJD1 1756 aa16.52■□□□□ 0.23
UPF3B-204ENST00000619445 ZBTB7AO95365 584 aa16.51■□□□□ 0.23
UPF3B-204ENST00000619445 MYOM1P52179 1685 aa16.51■□□□□ 0.23
UPF3B-204ENST00000619445 TATP17735 454 aaPredicted RBP16.51■□□□□ 0.23
UPF3B-204ENST00000619445 NSD3Q9BZ95 1437 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms