RNA–Protein interactions for RNA: ENST00000613547.4

MDC1-209, Transcript of mediator of DNA damage checkpoint 1, humanhuman

TSL 5 BASIC

Gene MDC1, Length 830 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDC1-209ENST00000613547 POTEAQ6S8J7 498 aa18.05■□□□□ 0.48
MDC1-209ENST00000613547 ATRNO75882 1429 aa18.05■□□□□ 0.48
MDC1-209ENST00000613547 RTL1A6NKG5 1358 aa18.04■□□□□ 0.48
MDC1-209ENST00000613547 KIF24Q5T7B8 1368 aa18.04■□□□□ 0.48
MDC1-209ENST00000613547 RBM6P78332 1123 aaKnown RBP18.04■□□□□ 0.48
MDC1-209ENST00000613547 RRS1Q15050 365 aaKnown RBP18.04■□□□□ 0.48
MDC1-209ENST00000613547 BLMP54132 1417 aaPredicted RBP18.04■□□□□ 0.48
MDC1-209ENST00000613547 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.03■□□□□ 0.48
MDC1-209ENST00000613547 LMO7Q8WWI1 1683 aa18.03■□□□□ 0.48
MDC1-209ENST00000613547 CAMTA1Q9Y6Y1 1673 aa18.03■□□□□ 0.48
MDC1-209ENST00000613547 CSB-PGBD3P0DP91 1061 aa18.03■□□□□ 0.48
MDC1-209ENST00000613547 FBLN1P23142 703 aa18.03■□□□□ 0.48
MDC1-209ENST00000613547 IP6K1Q92551 441 aa18.03■□□□□ 0.48
MDC1-209ENST00000613547 COL5A2P05997 1499 aaPredicted RBP18.02■□□□□ 0.48
MDC1-209ENST00000613547 CNGB1Q14028 1251 aaPredicted RBP18.02■□□□□ 0.48
MDC1-209ENST00000613547 GJD4Q96KN9 370 aaPredicted RBP18.02■□□□□ 0.48
MDC1-209ENST00000613547 ANKRD26Q9UPS8 1709 aa18.02■□□□□ 0.48
MDC1-209ENST00000613547 AXIN2Q9Y2T1 843 aa18.02■□□□□ 0.48
MDC1-209ENST00000613547 PPM1GO15355 546 aaPredicted RBP18.01■□□□□ 0.47
MDC1-209ENST00000613547 HOXC9P31274 260 aa18.01■□□□□ 0.47
MDC1-209ENST00000613547 FLT4P35916 1363 aa18.01■□□□□ 0.47
MDC1-209ENST00000613547 WDR17Q8IZU2 1322 aa18■□□□□ 0.47
MDC1-209ENST00000613547 TOM1L2Q6ZVM7 507 aa18■□□□□ 0.47
MDC1-209ENST00000613547 EMILIN1Q9Y6C2 1016 aa18■□□□□ 0.47
MDC1-209ENST00000613547 NRAPQ86VF7 1730 aa18■□□□□ 0.47
MDC1-209ENST00000613547 SPATA31A5Q5VU36 1347 aa17.99■□□□□ 0.47
MDC1-209ENST00000613547 SPATA31A7Q8IWB4 1347 aa17.99■□□□□ 0.47
MDC1-209ENST00000613547 CRB1P82279 1406 aa17.99■□□□□ 0.47
MDC1-209ENST00000613547 SMG6Q86US8 1419 aaKnown RBP17.99■□□□□ 0.47
MDC1-209ENST00000613547 LARP1Q6PKG0 1096 aaKnown RBP17.99■□□□□ 0.47
MDC1-209ENST00000613547 ANKRD24Q8TF21 1146 aa17.99■□□□□ 0.47
MDC1-209ENST00000613547 POLKQ9UBT6 870 aa17.99■□□□□ 0.47
MDC1-209ENST00000613547 ERBB3P21860 1342 aa17.98■□□□□ 0.47
MDC1-209ENST00000613547 LTN1O94822 1766 aa17.98■□□□□ 0.47
MDC1-209ENST00000613547 COL18A1P39060 1754 aa17.98■□□□□ 0.47
MDC1-209ENST00000613547 SPATA31A1Q5TZJ5 1347 aa17.98■□□□□ 0.47
MDC1-209ENST00000613547 INSRP06213 1382 aa17.97■□□□□ 0.47
MDC1-209ENST00000613547 LTV1Q96GA3 475 aaPredicted RBP17.96■□□□□ 0.47
MDC1-209ENST00000613547 NLRP2Q9NX02 1062 aa17.96■□□□□ 0.47
MDC1-209ENST00000613547 USP35Q9P2H5 1018 aa17.96■□□□□ 0.47
MDC1-209ENST00000613547 CDK12Q9NYV4 1490 aaPredicted RBP17.95■□□□□ 0.46
MDC1-209ENST00000613547 A0A0G2JS52 829 aa17.95■□□□□ 0.46
MDC1-209ENST00000613547 MYT1Q01538 1121 aa17.95■□□□□ 0.46
MDC1-209ENST00000613547 HSP90AB2PQ58FF8 381 aa17.95■□□□□ 0.46
MDC1-209ENST00000613547 TCP11L2Q8N4U5 519 aa17.95■□□□□ 0.46
MDC1-209ENST00000613547 CARD10Q9BWT7 1032 aa17.95■□□□□ 0.46
MDC1-209ENST00000613547 THRAP3Q9Y2W1 955 aaKnown RBP17.95■□□□□ 0.46
MDC1-209ENST00000613547 GLI3P10071 1580 aa17.93■□□□□ 0.46
MDC1-209ENST00000613547 FAM98CQ17RN3 349 aaKnown RBP17.93■□□□□ 0.46
MDC1-209ENST00000613547 BARGINQ6ZT62 677 aa17.92■□□□□ 0.46
MDC1-209ENST00000613547 MTHFSP49914 203 aa17.91■□□□□ 0.46
MDC1-209ENST00000613547 CDCA7Q9BWT1 371 aaPredicted RBP17.91■□□□□ 0.46
MDC1-209ENST00000613547 PEAK1Q9H792 1746 aa17.91■□□□□ 0.46
MDC1-209ENST00000613547 RGS12O14924 1447 aa17.9■□□□□ 0.46
MDC1-209ENST00000613547 ONECUT3O60422 494 aaPredicted RBP17.9■□□□□ 0.46
MDC1-209ENST00000613547 RALBP1Q15311 655 aa17.9■□□□□ 0.46
MDC1-209ENST00000613547 PARD3Q8TEW0 1356 aa17.9■□□□□ 0.46
MDC1-209ENST00000613547 SEPT12Q8IYM1 358 aa17.89■□□□□ 0.45
MDC1-209ENST00000613547 CFAP53Q96M91 514 aa17.89■□□□□ 0.45
MDC1-209ENST00000613547 FAM208AQ9UK61 1670 aaKnown RBP17.88■□□□□ 0.45
MDC1-209ENST00000613547 PPP2R1AP30153 589 aa17.88■□□□□ 0.45
MDC1-209ENST00000613547 ILDR2Q71H61 639 aa17.88■□□□□ 0.45
MDC1-209ENST00000613547 RGPD5Q99666 1765 aa17.87■□□□□ 0.45
MDC1-209ENST00000613547 MAP2P11137 1827 aaKnown RBP17.87■□□□□ 0.45
MDC1-209ENST00000613547 EIF4A2Q14240 407 aaKnown RBP17.87■□□□□ 0.45
MDC1-209ENST00000613547 NBPF6Q5VWK0 638 aa17.86■□□□□ 0.45
MDC1-209ENST00000613547 NBPF4Q96M43 638 aa17.86■□□□□ 0.45
MDC1-209ENST00000613547 IL2RBP14784 551 aa17.85■□□□□ 0.45
MDC1-209ENST00000613547 DIAPH1O60610 1272 aaKnown RBP17.84■□□□□ 0.45
MDC1-209ENST00000613547 PDE3BQ13370 1112 aa17.84■□□□□ 0.45
MDC1-209ENST00000613547 RAPGEF4Q8WZA2 1011 aa17.84■□□□□ 0.45
MDC1-209ENST00000613547 DDB1Q16531 1140 aa17.83■□□□□ 0.44
MDC1-209ENST00000613547 KRT27Q7Z3Y8 459 aa17.83■□□□□ 0.44
MDC1-209ENST00000613547 EYA1Q99502 592 aa17.83■□□□□ 0.44
MDC1-209ENST00000613547 THSD7AQ9UPZ6 1657 aa17.83■□□□□ 0.44
MDC1-209ENST00000613547 DISP2A7MBM2 1401 aa17.82■□□□□ 0.44
MDC1-209ENST00000613547 MYBBP1AQ9BQG0 1328 aaKnown RBP17.82■□□□□ 0.44
MDC1-209ENST00000613547 USHBP1Q8N6Y0 703 aa17.82■□□□□ 0.44
MDC1-209ENST00000613547 EXOC5O00471 708 aa17.81■□□□□ 0.44
MDC1-209ENST00000613547 TATP17735 454 aaPredicted RBP17.81■□□□□ 0.44
MDC1-209ENST00000613547 IL13P35225 146 aa17.81■□□□□ 0.44
MDC1-209ENST00000613547 PRKRIP1Q9H875 184 aaPredicted RBP17.81■□□□□ 0.44
MDC1-209ENST00000613547 NUDCQ9Y266 331 aa17.81■□□□□ 0.44
MDC1-209ENST00000613547 IGSF1Q8N6C5 1336 aa17.8■□□□□ 0.44
MDC1-209ENST00000613547 ANP32CO43423 234 aa17.8■□□□□ 0.44
MDC1-209ENST00000613547 U2SURPO15042 1029 aaKnown RBP17.78■□□□□ 0.44
MDC1-209ENST00000613547 NCAPD2Q15021 1401 aa17.78■□□□□ 0.44
MDC1-209ENST00000613547 TNS2Q63HR2 1409 aa17.78■□□□□ 0.44
MDC1-209ENST00000613547 COL3A1P02461 1466 aaPredicted RBP17.77■□□□□ 0.44
MDC1-209ENST00000613547 PARP4Q9UKK3 1724 aaKnown RBP17.77■□□□□ 0.44
MDC1-209ENST00000613547 OVOS2A0A0G2JMS6 1433 aa17.76■□□□□ 0.43
MDC1-209ENST00000613547 ZCRB1Q8TBF4 217 aaKnown RBP17.76■□□□□ 0.43
MDC1-209ENST00000613547 MEGF6O75095 1541 aa17.76■□□□□ 0.43
MDC1-209ENST00000613547 PLEKHG2Q9H7P9 1386 aa17.76■□□□□ 0.43
MDC1-209ENST00000613547 WNK3Q9BYP7 1800 aa17.75■□□□□ 0.43
MDC1-209ENST00000613547 SULT6B1Q6IMI4 303 aa17.75■□□□□ 0.43
MDC1-209ENST00000613547 LRRC37A3O60309 1634 aa17.75■□□□□ 0.43
MDC1-209ENST00000613547 SPG7Q9UQ90 795 aa17.74■□□□□ 0.43
MDC1-209ENST00000613547 FAM196AQ6ZSG2 479 aa17.73■□□□□ 0.43
MDC1-209ENST00000613547 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.73■□□□□ 0.432e-7■□□□□ 10.2
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms