RNA–Protein interactions for RNA: ENST00000611659.4

TPM3-223, Transcript of tropomyosin 3, humanhuman

TSL 3 BASIC

Gene TPM3, Length 3,149 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-223ENST00000611659 FYB1O15117 783 aa14.7□□□□□ -0.06
TPM3-223ENST00000611659 NOL7Q9UMY1 257 aaKnown RBP14.7□□□□□ -0.06
TPM3-223ENST00000611659 MRPL50Q8N5N7 158 aaKnown RBP14.7□□□□□ -0.06
TPM3-223ENST00000611659 RNF214Q8ND24 703 aa14.7□□□□□ -0.06
TPM3-223ENST00000611659 ATAD2Q6PL18 1390 aa14.7□□□□□ -0.06
TPM3-223ENST00000611659 VAMP4O75379 141 aa14.7□□□□□ -0.06
TPM3-223ENST00000611659 SYCE3A1L190 88 aa14.69□□□□□ -0.06
TPM3-223ENST00000611659 PLEKHM2Q8IWE5 1019 aa14.69□□□□□ -0.06
TPM3-223ENST00000611659 VWDEQ8N2E2 1590 aa14.69□□□□□ -0.06
TPM3-223ENST00000611659 MINK1Q8N4C8 1332 aaPredicted RBP14.69□□□□□ -0.06
TPM3-223ENST00000611659 GPT2Q8TD30 523 aa14.68□□□□□ -0.06
TPM3-223ENST00000611659 SETBP1Q9Y6X0 1596 aa14.68□□□□□ -0.06
TPM3-223ENST00000611659 CFAP65Q6ZU64 1925 aaKnown RBP14.68□□□□□ -0.06
TPM3-223ENST00000611659 NEURL4Q96JN8 1562 aa14.68□□□□□ -0.06
TPM3-223ENST00000611659 TERF2IPQ9NYB0 399 aa14.68□□□□□ -0.06
TPM3-223ENST00000611659 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.68□□□□□ -0.06
TPM3-223ENST00000611659 ST18O60284 1047 aa14.67□□□□□ -0.06
TPM3-223ENST00000611659 HS1BP3Q53T59 392 aa14.67□□□□□ -0.06
TPM3-223ENST00000611659 OTUD7AQ8TE49 926 aaPredicted RBP14.67□□□□□ -0.06
TPM3-223ENST00000611659 USP26Q9BXU7 913 aa14.67□□□□□ -0.06
TPM3-223ENST00000611659 USP32Q8NFA0 1604 aa14.67□□□□□ -0.06
TPM3-223ENST00000611659 EFCAB6Q5THR3 1501 aa14.67□□□□□ -0.06
TPM3-223ENST00000611659 INTS3Q68E01 1043 aaKnown RBP14.67□□□□□ -0.06
TPM3-223ENST00000611659 PHACTR3Q96KR7 559 aa14.67□□□□□ -0.06
TPM3-223ENST00000611659 ADGRB1O14514 1584 aa14.66□□□□□ -0.06
TPM3-223ENST00000611659 TULP4Q9NRJ4 1543 aa14.66□□□□□ -0.06
TPM3-223ENST00000611659 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.66□□□□□ -0.06
TPM3-223ENST00000611659 ZKSCAN5Q9Y2L8 839 aa14.66□□□□□ -0.06
TPM3-223ENST00000611659 ZNF500O60304 480 aaPredicted RBP14.66□□□□□ -0.06
TPM3-223ENST00000611659 FCHSD2O94868 740 aa14.66□□□□□ -0.06
TPM3-223ENST00000611659 RAPGEF3O95398 923 aa14.66□□□□□ -0.06
TPM3-223ENST00000611659 PTMAP06454 111 aaKnown RBP14.66□□□□□ -0.06
TPM3-223ENST00000611659 TTC22Q5TAA0 569 aa14.66□□□□□ -0.06
TPM3-223ENST00000611659 IFT172Q9UG01 1749 aa14.66□□□□□ -0.06
TPM3-223ENST00000611659 CYP2E1P05181 493 aaPredicted RBP14.66□□□□□ -0.06
TPM3-223ENST00000611659 TERF1P54274 439 aa14.66□□□□□ -0.06
TPM3-223ENST00000611659 TWISTNBQ3B726 338 aaPredicted RBP14.66□□□□□ -0.06
TPM3-223ENST00000611659 ZNF428Q96B54 188 aa14.66□□□□□ -0.06
TPM3-223ENST00000611659 PDLIM2Q96JY6 352 aa14.66□□□□□ -0.06
TPM3-223ENST00000611659 TMEM63CQ9P1W3 806 aa14.66□□□□□ -0.06
TPM3-223ENST00000611659 MED14O60244 1454 aa14.65□□□□□ -0.06
TPM3-223ENST00000611659 CASC1Q6TDU7 716 aa14.65□□□□□ -0.06
TPM3-223ENST00000611659 ARHGAP45Q92619 1136 aa14.65□□□□□ -0.06
TPM3-223ENST00000611659 NSFL1CQ9UNZ2 370 aaKnown RBP14.65□□□□□ -0.06
TPM3-223ENST00000611659 CWC22Q9HCG8 908 aaKnown RBP14.65□□□□□ -0.06
TPM3-223ENST00000611659 MBIPQ9NS73 344 aa14.65□□□□□ -0.06
TPM3-223ENST00000611659 ADGRB3O60242 1522 aa14.64□□□□□ -0.07
TPM3-223ENST00000611659 VGFO15240 615 aaPredicted RBP14.64□□□□□ -0.07
TPM3-223ENST00000611659 SMARCA5O60264 1052 aaPredicted RBP14.64□□□□□ -0.07
TPM3-223ENST00000611659 NPM1P06748 294 aaKnown RBP eCLIP14.64□□□□□ -0.07
TPM3-223ENST00000611659 FOXD4L6Q3SYB3 417 aaPredicted RBP14.64□□□□□ -0.07
TPM3-223ENST00000611659 FOXD4L3Q6VB84 417 aaPredicted RBP14.64□□□□□ -0.07
TPM3-223ENST00000611659 PUS7Q96PZ0 661 aaKnown RBP14.64□□□□□ -0.07
TPM3-223ENST00000611659 ZC3H13Q5T200 1668 aaKnown RBP14.64□□□□□ -0.07
TPM3-223ENST00000611659 COL3A1P02461 1466 aaPredicted RBP14.64□□□□□ -0.07
TPM3-223ENST00000611659 MPNDQ8N594 471 aa14.64□□□□□ -0.07
TPM3-223ENST00000611659 MAP7D2Q96T17 732 aa14.64□□□□□ -0.07
TPM3-223ENST00000611659 PPRC1Q5VV67 1664 aaKnown RBP14.64□□□□□ -0.07
TPM3-223ENST00000611659 MROH1Q8NDA8 1641 aa14.64□□□□□ -0.07
TPM3-223ENST00000611659 LRSAM1Q6UWE0 723 aa14.64□□□□□ -0.07
TPM3-223ENST00000611659 ZDHHC9Q9Y397 364 aa14.64□□□□□ -0.07
TPM3-223ENST00000611659 SDSP20132 328 aa14.63□□□□□ -0.07
TPM3-223ENST00000611659 BRPF1P55201 1214 aaPredicted RBP14.63□□□□□ -0.07
TPM3-223ENST00000611659 GNAI1P63096 354 aa14.63□□□□□ -0.07
TPM3-223ENST00000611659 NFE2L2Q16236 605 aa14.63□□□□□ -0.07
TPM3-223ENST00000611659 DNTTIP2Q5QJE6 756 aaKnown RBP14.63□□□□□ -0.07
TPM3-223ENST00000611659 NOL8Q76FK4 1167 aaKnown RBP14.63□□□□□ -0.07
TPM3-223ENST00000611659 C8orf58Q8NAV2 365 aa14.63□□□□□ -0.07
TPM3-223ENST00000611659 ABCC4O15439 1325 aa14.63□□□□□ -0.07
TPM3-223ENST00000611659 CSPP1Q1MSJ5 1256 aa14.63□□□□□ -0.07
TPM3-223ENST00000611659 HDGFL2Q7Z4V5 671 aaPredicted RBP14.63□□□□□ -0.07
TPM3-223ENST00000611659 CCDC39Q9UFE4 941 aa14.63□□□□□ -0.07
TPM3-223ENST00000611659 TPRNQ4KMQ1 711 aa14.62□□□□□ -0.07
TPM3-223ENST00000611659 CFAP44Q96MT7 982 aa14.62□□□□□ -0.07
TPM3-223ENST00000611659 API5Q9BZZ5 524 aaKnown RBP14.62□□□□□ -0.07
TPM3-223ENST00000611659 INO80Q9ULG1 1556 aaPredicted RBP14.62□□□□□ -0.07
TPM3-223ENST00000611659 NPATQ14207 1427 aa14.62□□□□□ -0.07
TPM3-223ENST00000611659 DCTPP1Q9H773 170 aa14.62□□□□□ -0.07
TPM3-223ENST00000611659 RPGRIP1LQ68CZ1 1315 aa14.62□□□□□ -0.07
TPM3-223ENST00000611659 PRAM1Q96QH2 718 aa14.61□□□□□ -0.07
TPM3-223ENST00000611659 CABP1Q9NZU7 370 aa14.61□□□□□ -0.07
TPM3-223ENST00000611659 PTCH1Q13635 1447 aa14.61□□□□□ -0.07
TPM3-223ENST00000611659 GLI2P10070 1586 aa14.61□□□□□ -0.07
TPM3-223ENST00000611659 FAM83GA6ND36 823 aa14.6□□□□□ -0.07
TPM3-223ENST00000611659 REC8O95072 547 aa14.6□□□□□ -0.07
TPM3-223ENST00000611659 NEK4P51957 841 aa14.6□□□□□ -0.07
TPM3-223ENST00000611659 DCTN1Q14203 1278 aa14.6□□□□□ -0.07
TPM3-223ENST00000611659 PRDM10Q9NQV6 1147 aa14.6□□□□□ -0.07
TPM3-223ENST00000611659 IFT57Q9NWB7 429 aa14.6□□□□□ -0.07
TPM3-223ENST00000611659 PIK3R4Q99570 1358 aa14.6□□□□□ -0.07
TPM3-223ENST00000611659 ASXL2Q76L83 1435 aa14.59□□□□□ -0.07
TPM3-223ENST00000611659 DYNC1I1O14576 645 aa14.59□□□□□ -0.07
TPM3-223ENST00000611659 SASS6Q6UVJ0 657 aa14.59□□□□□ -0.07
TPM3-223ENST00000611659 LRRC7Q96NW7 1537 aa14.59□□□□□ -0.07
TPM3-223ENST00000611659 POLKQ9UBT6 870 aa14.59□□□□□ -0.07
TPM3-223ENST00000611659 MCM5P33992 734 aa14.58□□□□□ -0.08
TPM3-223ENST00000611659 UHRF1BP1LA0JNW5 1464 aa14.58□□□□□ -0.08
TPM3-223ENST00000611659 ERC2O15083 957 aa14.57□□□□□ -0.08
TPM3-223ENST00000611659 MBD3O95983 291 aa14.57□□□□□ -0.08
TPM3-223ENST00000611659 GDPD2Q9HCC8 539 aa14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms